Basic Information

Insect: Coleophora flavipennella
Gene Symbol: -
Assembly: GCA_947284805.1
Location: OX369277.1:11512858-11533457[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.48 45 6.1 0.5 1 23 94 117 94 117 0.89

2 17 1.4 1.3e+02 4.7 0.5 3 23 122 142 120 142 0.95

3 17 0.082 7.7 8.6 3.8 2 23 146 168 145 168 0.95

4 17 0.012 1.1 11.2 0.0 1 20 432 451 432 453 0.95

5 17 0.067 6.3 8.8 1.2 3 23 464 484 463 484 0.96

6 17 0.005 0.47 12.4 4.2 1 23 532 555 532 555 0.96

7 17 0.12 12 8.0 0.7 2 23 632 654 631 654 0.96

8 17 0.085 8.1 8.5 0.3 1 23 659 682 659 682 0.96

9 17 9e-05 0.0085 17.9 1.4 1 23 688 710 688 710 0.96

10 17 2.1e-05 0.002 19.8 2.9 1 23 717 739 717 739 0.98

11 17 0.00012 0.011 17.5 2.1 1 23 744 766 744 766 0.96

12 17 0.004 0.38 12.7 0.9 1 23 772 794 772 794 0.98

13 17 7.8e-05 0.0074 18.1 1.0 1 23 800 822 800 822 0.94

14 17 3e-05 0.0029 19.4 2.1 2 23 829 850 829 850 0.98

15 17 0.00014 0.013 17.3 2.7 2 23 860 882 859 882 0.97

16 17 5e-05 0.0047 18.7 0.0 1 23 887 909 887 909 0.98

17 17 6.4 6.1e+02 2.6 0.9 1 23 915 938 915 938 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.48	45	6.1	0.5	1	23	94	117	94	117	0.89
2	17	1.4	1.3e+02	4.7	0.5	3	23	122	142	120	142	0.95
3	17	0.082	7.7	8.6	3.8	2	23	146	168	145	168	0.95
4	17	0.012	1.1	11.2	0.0	1	20	432	451	432	453	0.95
5	17	0.067	6.3	8.8	1.2	3	23	464	484	463	484	0.96
6	17	0.005	0.47	12.4	4.2	1	23	532	555	532	555	0.96
7	17	0.12	12	8.0	0.7	2	23	632	654	631	654	0.96
8	17	0.085	8.1	8.5	0.3	1	23	659	682	659	682	0.96
9	17	9e-05	0.0085	17.9	1.4	1	23	688	710	688	710	0.96
10	17	2.1e-05	0.002	19.8	2.9	1	23	717	739	717	739	0.98
11	17	0.00012	0.011	17.5	2.1	1	23	744	766	744	766	0.96
12	17	0.004	0.38	12.7	0.9	1	23	772	794	772	794	0.98
13	17	7.8e-05	0.0074	18.1	1.0	1	23	800	822	800	822	0.94
14	17	3e-05	0.0029	19.4	2.1	2	23	829	850	829	850	0.98
15	17	0.00014	0.013	17.3	2.7	2	23	860	882	859	882	0.97
16	17	5e-05	0.0047	18.7	0.0	1	23	887	909	887	909	0.98
17	17	6.4	6.1e+02	2.6	0.9	1	23	915	938	915	938	0.94

Sequence Information

Coding Sequence: ATGACCTCTGACGAATCCGACGATGAGCCCTTAGCAGCTTTAGCGGCTGCCAAGAAGTTACACCCTGAGAAGTTCGTCACCAAAGTTGATCCAAAACCTGCGAAAGAAGTAGCTTACGGCGTGAAGCGAAAACGGAGGAGACCTGCGAATCAGCTGCATAGGAAGAGGTTGCCATTGACAGTCCATCTCAGCCGCAAGACTAGGACACCTGCAGACGCATTGGTGGAAAGGCCCATGGATGTGTGGTTGTACCTAAGAGATTTCAATACTGTAGGGCCATATCACTGTCTGATTTGCCCAGAGTTGTTTATTAATAAGAGTAAAATCATGCTCCATTATGTACTGAATCATAAAAAAGATTTTTGTGGAATATGCAGGTATTTTGTGTCAGATAGAGAAGCATGGCACAACCATTTAGAATACCACTCAACCTGGCCATGTTCCCAATGTAACCATAAGTTCTCTAATGACACTGAATGGCGGCACCATCTCAAAAACAGTCACAACCTTGTCCATTGCCGGTTATGCCACTTCAGTCTCACGGAAGAACAGTACAATGATCATTTACACAAAAGACATAATGTGACTAACACCACTACTCAAGATGAAGAAGTTTTTTGGGAAATTGATTATGGTGGCGCACAGAAATTCAATTGCCTGTTATGTTCCAAAACTGATCTGGCTTTTGCAGCATTCTTTAATCACTTCATGGTACATCATCACTTCACTCTTAAATGTATCTCTACACTACTCTGTGGTCGAGATTCACCGTTCCTAATTGACGGGGCTGATGTAAGTTCTGAGTTCATTGAGGGTTTGAAGACAGACTGTAAATATGGTTATGTGGATCTTGACAAAAAACAGGCTGAAGCTTTATTGGATGCGGACAAGTCTGCCACTGATACAACAGAACTGTTAAAAGTACTTTTACCTGAAATTAAAAGTGAAATACTTAGTGACACAGAGGATAAAGTGGAAGAAGCGAATAATGAAAGAACAAATGAGGAAAGGAAGGCAGAACTCGAATTTGTCAAGTCATATAAAGGCGATGTGGACTTTGATGTGACGGCATTGGAAGTGATTGCTCTCTACCAAACATACAATGACTATATAGACCAGATGCTTAAAACTTTAAGTACTAAACACATGCCTGAGAACTTGGACATAGACTATAAGAAAATAGAATTTGATACTACCAAAGTTGAATGTTGCTTATGTAATACGGAATCTCTGTCGCTACAAGCGTTGGTTGTGCACATGATTAAGATGCACTGTGTCAAAGCTATTCCATTATACTATTGCAGAGTTTGCACAGCTGCATTTGATACTGAGGATGAACTGACTGCCCACATAACTGAAGAACTCGGTGATTTTGATGATCTATGGCTTTGTCAGTTTTGCGACAAAGAATTTGACAACAGACAGGCTACTAGAAAGCATCTAACAGAACATTGGGACATGATGGAACATGACAACTGTTTCAGTCCACATCTTGGGTTCAAATGCAAGTTTTGTCCGACACTGTTTTGGAATGAACCTGACAGGGAGACTCATGAAGTGAAGGAACATTTTAATAACTATAAGGACCAGTATTACAAATGTGAGCATTGTTCTGAGATATTTAGTGACAAGATTTGGTTCATCCACCACTACCAAAACAAACACCCAAAAGAAGAAACCACTGAAGTCTACCTCCTAAAATGCTGCCTCTGTTGTTTAGTACTCCGAGGTGTTGATGAGATGAGGAAGCATTTCGGTGACAAACATCCTGAGGCAAGAAAGGTGTTTTGTTCAATTGGCCAATGTCAGTTTAGGCCGCTGTGTCACAGAAAGTCATTCAACCACCATTTGAAGATGCTACACACCCTCCGTATAAAAAGGGAGCAGCCGGTAAGTTGCTCGGTCTGCAGTGTAGTGTTCCCCAACACGAAGACCTGCAATGCTCACATGAACACTGTCCACGGGCCCGGCAAGTTCAAGTGCAAGATTTGTGAAGTTGCGCTTCGGTCTAATGATGAGAGGAAACTCCACTACCTGGTCAATCACCCCGGTCACCATCCCTTCGCGTGCAACATCTGTGGCAAGTCGTTCCAGTACAAGTCAACTCTATACATGCACAAGCAGGAGCACGCTGCCAACAGACAGACATTTGAGTGTAGCTACTGCCACAAAGTGTTTGCGAAGAAAGACTCCTTCCGCGAACACCTGCAGATCCACGAAGGACCGCGGCACGCGTGTTCCTACTGCCCGATGCGTTTTGCACAGCGCTCCAACATGTTACGTCACGAGCGCCGTCACACCGGCGAGCGGCCTTACACCTGTGCCCTGTGCCCGCGCACATTCGCCGACAAGGGCGCTTGCAACTCGCACGAGAGGACACACAAAAAAGAGACATCGTACGCTTGCATTTACTGCGGGCAGACCTTCGTGCAGAGATCCAAGCTGACCTACCACATTAGGAAGCACACGGGGGAAAATCTGGAGACGTGTTCGATTTGCTCGAAGATATTCACGAGTGCATGCTCGTTGCGCGAGCACATGAGAGTGCACGCCGCCAAGGCGAACAACGTGGTCATCAAGTGTCCGCTGTGTGAAAAGTCGTACCACGACGAGCGCCACATGATACGTCATATGCGCACTGTGCACACGCAAGGCGACTACAAATGCCCCATTTGCGACAAGGCGCTCACTAGCCGTGGAGGGCTAAGGGACCATGTCATTTCGCATAGTCCGCTCAACATTTACCGGTGCATACGCTGTCCAAAAACCTCAGCTATTAAACGGACGATGGTCAGGCATGTCAACAAGAGACATAACCCACAATCCACAGGGTCCACCTCCAGGGACCTGTATCAGATACTAGATCCACGCGAATGCAAGCTGGGCCTCGACGAAGAAACCCTGTTTAAGATCTTCGGGACACCAAAAAGTACTATGATTGACTTACAGACAGACTTTCCTGGTCTGCAAAATAAGATTACTGGCAATCAGGATAAGAGTCGAGAGCAGAGCGGAGATGAAGATGTGGATATAGAAGGTTCTGATGAAGATTCAAATGAAAGTGGAGATAGCGAGAGTAGTGGGAAGGAGACGAAGGATAGTCAGCATGATAATAATAGTTGTGGAGAGTTAGAGCCCACGGATTTTGTTAGTGTCAAAATTGAGCCGATGGATGAAGACGAAGTATCATAG
Protein Sequence: MTSDESDDEPLAALAAAKKLHPEKFVTKVDPKPAKEVAYGVKRKRRRPANQLHRKRLPLTVHLSRKTRTPADALVERPMDVWLYLRDFNTVGPYHCLICPELFINKSKIMLHYVLNHKKDFCGICRYFVSDREAWHNHLEYHSTWPCSQCNHKFSNDTEWRHHLKNSHNLVHCRLCHFSLTEEQYNDHLHKRHNVTNTTTQDEEVFWEIDYGGAQKFNCLLCSKTDLAFAAFFNHFMVHHHFTLKCISTLLCGRDSPFLIDGADVSSEFIEGLKTDCKYGYVDLDKKQAEALLDADKSATDTTELLKVLLPEIKSEILSDTEDKVEEANNERTNEERKAELEFVKSYKGDVDFDVTALEVIALYQTYNDYIDQMLKTLSTKHMPENLDIDYKKIEFDTTKVECCLCNTESLSLQALVVHMIKMHCVKAIPLYYCRVCTAAFDTEDELTAHITEELGDFDDLWLCQFCDKEFDNRQATRKHLTEHWDMMEHDNCFSPHLGFKCKFCPTLFWNEPDRETHEVKEHFNNYKDQYYKCEHCSEIFSDKIWFIHHYQNKHPKEETTEVYLLKCCLCCLVLRGVDEMRKHFGDKHPEARKVFCSIGQCQFRPLCHRKSFNHHLKMLHTLRIKREQPVSCSVCSVVFPNTKTCNAHMNTVHGPGKFKCKICEVALRSNDERKLHYLVNHPGHHPFACNICGKSFQYKSTLYMHKQEHAANRQTFECSYCHKVFAKKDSFREHLQIHEGPRHACSYCPMRFAQRSNMLRHERRHTGERPYTCALCPRTFADKGACNSHERTHKKETSYACIYCGQTFVQRSKLTYHIRKHTGENLETCSICSKIFTSACSLREHMRVHAAKANNVVIKCPLCEKSYHDERHMIRHMRTVHTQGDYKCPICDKALTSRGGLRDHVISHSPLNIYRCIRCPKTSAIKRTMVRHVNKRHNPQSTGSTSRDLYQILDPRECKLGLDEETLFKIFGTPKSTMIDLQTDFPGLQNKITGNQDKSREQSGDEDVDIEGSDEDSNESGDSESSGKETKDSQHDNNSCGELEPTDFVSVKIEPMDEDEVS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -