Cfla020543.1
Basic Information
- Insect
- Coleophora flavipennella
- Gene Symbol
- -
- Assembly
- GCA_947284805.1
- Location
- OX369278.1:930289-961264[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00019 0.017 16.9 3.8 1 23 300 322 300 322 0.98 2 11 0.18 17 7.5 0.2 1 23 329 351 329 351 0.98 3 11 5 4.7e+02 3.0 0.2 1 23 355 378 355 378 0.95 4 11 0.0027 0.25 13.2 2.7 1 23 385 408 385 408 0.97 5 11 1e-05 0.00095 20.9 0.1 3 23 415 435 414 435 0.97 6 11 0.091 8.6 8.4 4.7 1 23 441 464 441 464 0.92 7 11 0.00082 0.077 14.9 2.7 1 22 475 496 475 500 0.94 8 11 1.1e-05 0.0011 20.7 2.0 1 23 508 531 508 531 0.97 9 11 0.019 1.8 10.6 0.2 1 23 537 560 537 560 0.95 10 11 5.9e-06 0.00055 21.6 2.8 1 23 569 591 569 591 0.98 11 11 9.3e-05 0.0088 17.8 0.3 1 23 597 620 597 620 0.97
Sequence Information
- Coding Sequence
- ATGGAGCTGGTAGTTGATATTCCAGAATCTCCAGAGCATAAACCCGTTCTGGAAGCGAGTATACTGATATGCAGAATTTGTTTGAGTACTGATAAATCGATGAAAGATGTTGGTGTATACGCTGCATATTTTAGGGATTTGTCTGGCTTAGCTGTGTCAAATTGTGATGGTCTACCGCAGTGGATATGTTATGAATGCTGCCATCTGCTCCGCAAAGCTGTGTGGTTCAAGAAGAAACTGTTGAAGGCTCACACTATGTTGTACCAGTACCTTGGTAGATGTGCGCCTTTCCCCATAGACGCTCACGACCCTGAACTACTCAAGTACGCTACGCCAGAGCTGTGCCCAACGGAAACTCTCACTTTCGACGCAGGGAAGCTGAAAATGGGCTTCCATAAGGTCTTACAGCATACGAAACAAATGGACCAAAGCAAATTGCATGATGTAGATATACTTTTAAATAAGGCTGAGACTAATTACAACAATACAACAGCTAATTACAACATTACAACTGATTACAACAGTCCGATCAAAGAGGAAGGCGGTTTCTCAGACTATGAAGACCATATTACATTGGAGGAGCTGAGATCAAATGTTACAAAGCTGGACGGACCGCCGAAAATCGAGCAAGAGGATTTAGATCTCTTATTGCCAATCAGTGAGAGTCAGAGCAGCAAGGGGAAGTGGAAGAGGAGAGTGGGAAGAAGTGGAGAGGAGAGAGTTAAAAAGAAGAGAAAAGTAAGCGATGAGAACGCAGAATCAAAGAGTGAAGAACCAAAGACATCGATTCGTAAAGCCATCGAGATTGACCCCACAAAGATCCGGGTCATCACCCTAAACCCCGAAGAGCAAGTGAAACAGCGGGAGGAGGAGAGCAAGCTCAATCTGAAGTTCCCGTTCCAGTGCCACCTGTGCTACAAAGGCTTCAACTTCGAGTCCAAACTACAGAACCACATGGCCAAACACAGTCCGTCCCGAGGCTCGTTTGAATGTAAGCTGTGTTCGATGTTCCTGCCAACGATGTGGAGCTACAGCGTGCACATGCTGATACACACGCGTCGGTACGAGTGCCTCAAGTGCGCGCGCCGCATGATCGACCGCGCCTCCATTGTCGACCACTACAGGTCACAACACGAAGGCGTGCTGACCGTGTACACTTGCGAGATATGCGGCAAAGTGTCGAACAACAACAAGACGCACAGGAGCCACATGCGCAACCAGCACAGCGGGACGCGGCCCGCGTGCAGCCAGTGCGGCAAGACGTTCGTCAATAATGATTCCCTCGTGGAACATCTGCAAATCCACGAAGGTGTCAAAAACTACGAGTGTTCCATTTGCGGCGCGCGATTCCGCACGCGCACTCAGATTAAGTGCCACCAGATGCACCGGCACAACGACGTGCGGCACACCGACCTGAGGCAGTACTACTGCGTGGAGTGCGACGTCAGGTTTAAAACGGCGCACAGTCTGCGGCAGCACTACAAGAAGAGTTTGAAGCACAAAGACGTGGAGAGTATGAAATTCGAGTGCCAGCACTGTGGTAAACGGTTCGAGACAGAGCCGGCTCTCACCCATCACGTTCGCGTCCAACATGAAGGCACCCGCAGCCACCGCTGCGCCTTCTGCCCGGCGGCGCTCGCGTCGCAGAACTCGCTGAACAAGCACGTGCGCGCCGTGCATCGCGGCCACCGCCCGCCCAAGAGACACGTGTGCCACATGTGCGGGAAGGCGTTCCGGGGCAAGAGTGTGCTAACGAACCACGTGCGCACGCACACAGGCGAGAAGCCGTTCGAGTGCGCCGAGTGCGGGCGCAAGTTCGCGCAGCGCACCGCCATGAGGACGCACGTCAAGTCTGTGCACTTGAAGCTCAAGAGAAGCGGCGCAGCCAAGGTAAAGCCACCACTCCCCGAAGAGGCCATCGAGCCCAAGCTGGACATCCACACTTACCCGAAGGAGGAGACGCCCCTGGTGTTCGAGTCGTGGCGCCAGCCCATGCAGCCCTGCGACGTGTACTTCACCGTCACCGCGGGCCCCTGA
- Protein Sequence
- MELVVDIPESPEHKPVLEASILICRICLSTDKSMKDVGVYAAYFRDLSGLAVSNCDGLPQWICYECCHLLRKAVWFKKKLLKAHTMLYQYLGRCAPFPIDAHDPELLKYATPELCPTETLTFDAGKLKMGFHKVLQHTKQMDQSKLHDVDILLNKAETNYNNTTANYNITTDYNSPIKEEGGFSDYEDHITLEELRSNVTKLDGPPKIEQEDLDLLLPISESQSSKGKWKRRVGRSGEERVKKKRKVSDENAESKSEEPKTSIRKAIEIDPTKIRVITLNPEEQVKQREEESKLNLKFPFQCHLCYKGFNFESKLQNHMAKHSPSRGSFECKLCSMFLPTMWSYSVHMLIHTRRYECLKCARRMIDRASIVDHYRSQHEGVLTVYTCEICGKVSNNNKTHRSHMRNQHSGTRPACSQCGKTFVNNDSLVEHLQIHEGVKNYECSICGARFRTRTQIKCHQMHRHNDVRHTDLRQYYCVECDVRFKTAHSLRQHYKKSLKHKDVESMKFECQHCGKRFETEPALTHHVRVQHEGTRSHRCAFCPAALASQNSLNKHVRAVHRGHRPPKRHVCHMCGKAFRGKSVLTNHVRTHTGEKPFECAECGRKFAQRTAMRTHVKSVHLKLKRSGAAKVKPPLPEEAIEPKLDIHTYPKEETPLVFESWRQPMQPCDVYFTVTAGP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00355489;
- 90% Identity
- -
- 80% Identity
- -