Basic Information

Insect: Coleophora flavipennella
Gene Symbol: -
Assembly: GCA_947284805.1
Location: OX369267.1:15157440-15186279[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.24 23 7.1 1.9 1 23 172 195 172 195 0.98

2 19 0.0095 0.89 11.5 0.2 1 23 248 270 248 270 0.93

3 19 1.1 1e+02 5.0 0.1 2 23 276 298 275 298 0.92

4 19 0.021 2 10.4 2.4 1 23 304 326 304 326 0.99

5 19 0.31 29 6.7 3.4 1 23 332 355 332 355 0.96

6 19 0.16 15 7.6 1.1 1 23 364 387 364 387 0.95

7 19 0.00016 0.015 17.1 0.8 1 23 393 415 393 415 0.96

8 19 2.7e-05 0.0026 19.5 2.4 1 23 421 443 421 443 0.98

9 19 0.001 0.097 14.5 2.7 3 22 448 469 447 469 0.91

10 19 1.4 1.3e+02 4.7 1.3 1 23 692 715 692 715 0.95

11 19 1.1 1e+02 5.0 2.7 1 23 742 764 742 764 0.98

12 19 0.0089 0.83 11.6 0.2 1 23 770 792 770 792 0.94

13 19 0.24 22 7.1 0.2 2 23 798 820 797 820 0.92

14 19 0.0002 0.019 16.8 1.6 1 23 826 848 826 848 0.99

15 19 0.0093 0.87 11.5 1.1 1 23 854 877 854 877 0.96

16 19 0.39 37 6.4 1.0 1 23 886 909 886 909 0.93

17 19 0.001 0.096 14.6 5.2 1 23 915 937 915 937 0.95

18 19 0.0003 0.028 16.2 1.1 1 23 943 965 943 965 0.97

19 19 0.0052 0.49 12.3 0.3 5 22 974 991 972 991 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.24	23	7.1	1.9	1	23	172	195	172	195	0.98
2	19	0.0095	0.89	11.5	0.2	1	23	248	270	248	270	0.93
3	19	1.1	1e+02	5.0	0.1	2	23	276	298	275	298	0.92
4	19	0.021	2	10.4	2.4	1	23	304	326	304	326	0.99
5	19	0.31	29	6.7	3.4	1	23	332	355	332	355	0.96
6	19	0.16	15	7.6	1.1	1	23	364	387	364	387	0.95
7	19	0.00016	0.015	17.1	0.8	1	23	393	415	393	415	0.96
8	19	2.7e-05	0.0026	19.5	2.4	1	23	421	443	421	443	0.98
9	19	0.001	0.097	14.5	2.7	3	22	448	469	447	469	0.91
10	19	1.4	1.3e+02	4.7	1.3	1	23	692	715	692	715	0.95
11	19	1.1	1e+02	5.0	2.7	1	23	742	764	742	764	0.98
12	19	0.0089	0.83	11.6	0.2	1	23	770	792	770	792	0.94
13	19	0.24	22	7.1	0.2	2	23	798	820	797	820	0.92
14	19	0.0002	0.019	16.8	1.6	1	23	826	848	826	848	0.99
15	19	0.0093	0.87	11.5	1.1	1	23	854	877	854	877	0.96
16	19	0.39	37	6.4	1.0	1	23	886	909	886	909	0.93
17	19	0.001	0.096	14.6	5.2	1	23	915	937	915	937	0.95
18	19	0.0003	0.028	16.2	1.1	1	23	943	965	943	965	0.97
19	19	0.0052	0.49	12.3	0.3	5	22	974	991	972	991	0.94

Sequence Information

Coding Sequence: ATGAAATTTGAAACTAAGTATAGAAGGGAAAAAAGTCTTGAGCCTGAAACTGACACTTTAAATATAGTAATAAAAGAAGAAAAACATAACAAACATAATGAGGAACAGGTCATGTACACAAATATACCTATTGAAAATGAAAAGCTAATAAGAGAAGAAATCTTTAAAGCAGATGATTATATTTACTCAGATGATAACATTCCACTTTCATCAGATGACATTGTTAAGAAAGAAAAAGTCCTAGCCAAGAAAAAAAAAGTTGCTGCTAATAGAAATAAAGAGAAATTTCTACCCAAAATAAAAAAAGAGAAAGTCTCTGTTAAAAAAACAAGAAAAAAAGACCCCCGTAAAAAAAAGAAAGAAAATGTCGGGGCTAAAATAAAGAAAGAAAACAAAAATCATCCAAATCCTCCTGATGAAAGAAAGGTTATGACTTGCGAAAGCAAGAAAGAATTTGACAACAACACTGATGAAAGTGATGTACAAAATGATACTCACAATGAAAACGATCGATTCAAATGTCTAACATGTTTCACTTTGCTCGATAATAAATATGATCTTTTAAACCATTACCGCAAAGAGCATGCATCACAGGAAGCACCTGAAAGTTCTCAAGAACGTAGATATTCTAAAGTAAAATATAAAGATGAATACAGATTCAAATGTGAAAAATGCGAATATATGCATCATGTTAGATGGTTTATTCAAAGACATGTAAAGTCACACAATGATAAAAGACCTTTTAATTGTAAGATTTGTGGCAGGACTTATAAAAGTGCTCTAGAGATTTACTGGCACGGCCGAGCCCACACTACTGCAAAGTGGCAGTGTTTTTACCGGTGCGGCTTCGCCACTGCTTACAAGGGTGCTCTAAAAATCCACGAGGCAGTCCACCGAGCTGAGTACAGATACACGTGTGACAAATGCAGTAGCGGTTTCCACACGAGGATCGAGCTAATGGAACATCAAAACAAACATGACGGCATCAGACCGTTCGTCTGTGACATATGTGGCTGTGCATATCATATTCGCAGGTATCTCCAATCACATAAGAGCAGACTACATCCACAGTCGTCGAGTGTAAAGCGCTACCTCTGCGTGCACTGTTCCCTGCCCTGCGACACCATGAACGCTCTCAATGAGCATATGAAAGTGGAGCACGAAAAACGAACGGAGTACCTCTGTGAACTGTGTGGGAAGACTCTTACCACTCAAGAGAAACTGTCACAACACAAGCGAGTCCATACGGGCGCTAAGAACTATGAGTGCAATATTTGCGGAAAAAGGCTAACCAGGAAATGTCATCTAATTATTCATATTAACGGGCACACCAGGGAACGTTGCTTCCGATGCAAGTGTGGCAAGAAATACGTTCAGAAGAGCGCCCTGATTCGACACCAGAGGACAAGGTACCTTttttatcctcaattgGTTATAGATAACAATTTCCTTCCAAAAAGTGTCTGTTCTTCATGCATAGACAAAGTAGATGAAATACATGATTACCATTTAAAAGTTGCTGCTAATCAAAATCTTCTACTTCGATACTTAAATGAAGGTGTACGCAATCTGAATGAATTTTATTTCACTTTGAAAAACAATTTAGTTAAATTAGAAAAAGAAGGTGAAAAAATTATTGGACCTGAAACTTTAGAAGTAGTAATAAAACAAGAAAAAGATGATAAATCCAATGAGGAACAAGTAATCTATACCAACAGGCCAATTGAAACTGAAACAGAAATAAAAAAAGAAATAGTAGATAATAATGATGATGATGATGATGATATTTATTCAGATGAAAACAATCCACTTTGGTCAGACAAAGAAACAAAAGTCCCAGCTAAGAGAAAAAAAGAAAAAGTGTCAGCTAAAGGAAAGAAAGAAAATGTCTCGACAAAAAGAAAGAAAGACAATGCCCCAACTGAAATAAAAAAAGAAGATGAAGCTGAAGACCAACTGAAACCTCCTGATGGTGGAAATATAAGTCATGAAATTAAGATTGAAATTGGGAACTTTAATGATGAAGGAGATGATCAAACAGATCAAGAAGATGAAAATAATCAAAGTGATCGTTATAAATGCTTAACATGTTTCATTTTGTTTGAGAATAAAGATGATCTTTTATTTCATTACCGCAATGATCACGCACCAACATCACTGGAAAACGAACCAGAGAGTACACAATGCAAGTATATTGAAGAGAAGTATAATGATGGATACCGATTCAAATGTGAAAAATGTGAATATACAAATAAAGTAAGATGGCATATTGAACGGCATGTTAAGTCACACACTGATAAAAGACCTTTTAATTGTAAAATTTGTGGCAGGGTTTACAAAACGGCTTTGGAAATTTACACTCACGGTCGAGCCCATACTACTGCAAAGTTAGAGTGTATGTATCACTGCGGCTTCGCCACTGCTTATAAGGGTGCTCTGAAAAATCACGAGGCAGTGCACCGAGCGGAGTACAAGTACACATGTACCGAATGTGGCACGGGTTTCCACACGAATATTCAGCTCATAGAGCATAGGAACAAACACCAAGGTGTGAGACCATTTGTGTGTGACGTGTGCGGTGCAGCTTTTCATGTGCGGAGATATCTCCAAACACACAAAAGCAAGCTACACCCTCAGTCTTCCAGTTTAAAGCGCTATCTCTGCGTGCACTGTTCCCTGCCCTGCGACACCATGAATGCTCTCAATGAGCATATGAAAGCGGAACACGAAAAACGGACGGAGTTCCTTTGTGACTTGTGCGGGAAGACCTTCAAGAATAAAGATAAACTGACGTGTCATAAACGAACTCATCTGGGCATTAAACCTTTTGAGTGCCATATATGCGGGAAAAAGATGGCCAAGAAGTTTAACCTAAATATTCATATAAACGGTCACACCAAGGAACAATACTTCCAATGCCAATGTGGCAAGAAATACATACAGAAAAGCGCTCTGGTGCGACATCAAAATACGAGGTGCCCTGATATAGGCCGACCTGAGGCATCCAAGTATTCCACTGAAGTTGATGAATCTCAGGAGGTTACCACTGAAGTTGATGAATCTCGGGAGGCTACCACTGAAGTTGATGAATCTCAGGAGGCTACCACTGAAGTTGATGAATCTCAGGAGGTTTCCACTGAAGTTGATGAATCGGAGGAGGCTAAAAGGACGATGGAAGCAAAAGAAGAATTAAGTGAATGA
Protein Sequence: MKFETKYRREKSLEPETDTLNIVIKEEKHNKHNEEQVMYTNIPIENEKLIREEIFKADDYIYSDDNIPLSSDDIVKKEKVLAKKKKVAANRNKEKFLPKIKKEKVSVKKTRKKDPRKKKKENVGAKIKKENKNHPNPPDERKVMTCESKKEFDNNTDESDVQNDTHNENDRFKCLTCFTLLDNKYDLLNHYRKEHASQEAPESSQERRYSKVKYKDEYRFKCEKCEYMHHVRWFIQRHVKSHNDKRPFNCKICGRTYKSALEIYWHGRAHTTAKWQCFYRCGFATAYKGALKIHEAVHRAEYRYTCDKCSSGFHTRIELMEHQNKHDGIRPFVCDICGCAYHIRRYLQSHKSRLHPQSSSVKRYLCVHCSLPCDTMNALNEHMKVEHEKRTEYLCELCGKTLTTQEKLSQHKRVHTGAKNYECNICGKRLTRKCHLIIHINGHTRERCFRCKCGKKYVQKSALIRHQRTRYLFYPQLVIDNNFLPKSVCSSCIDKVDEIHDYHLKVAANQNLLLRYLNEGVRNLNEFYFTLKNNLVKLEKEGEKIIGPETLEVVIKQEKDDKSNEEQVIYTNRPIETETEIKKEIVDNNDDDDDDIYSDENNPLWSDKETKVPAKRKKEKVSAKGKKENVSTKRKKDNAPTEIKKEDEAEDQLKPPDGGNISHEIKIEIGNFNDEGDDQTDQEDENNQSDRYKCLTCFILFENKDDLLFHYRNDHAPTSLENEPESTQCKYIEEKYNDGYRFKCEKCEYTNKVRWHIERHVKSHTDKRPFNCKICGRVYKTALEIYTHGRAHTTAKLECMYHCGFATAYKGALKNHEAVHRAEYKYTCTECGTGFHTNIQLIEHRNKHQGVRPFVCDVCGAAFHVRRYLQTHKSKLHPQSSSLKRYLCVHCSLPCDTMNALNEHMKAEHEKRTEFLCDLCGKTFKNKDKLTCHKRTHLGIKPFECHICGKKMAKKFNLNIHINGHTKEQYFQCQCGKKYIQKSALVRHQNTRCPDIGRPEASKYSTEVDESQEVTTEVDESREATTEVDESQEATTEVDESQEVSTEVDESEEAKRTMEAKEELSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -