Cfla018271.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Coleophora flavipennella
Gene Symbol
-
Assembly
GCA_947284805.1
Location
OX369258.1:2098141-2110256[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.09 8.5 8.4 0.0 2 23 209 230 208 230 0.96
2 16 0.15 14 7.8 8.6 1 23 236 259 236 259 0.98
3 16 8.3 7.8e+02 2.2 2.3 1 23 272 294 272 294 0.85
4 16 0.00096 0.091 14.6 3.2 1 23 518 540 518 540 0.98
5 16 0.016 1.5 10.8 5.5 2 23 546 568 545 568 0.95
6 16 3.6e-05 0.0034 19.1 1.4 2 23 577 598 577 598 0.97
7 16 0.00086 0.081 14.8 2.0 2 23 602 623 601 623 0.97
8 16 0.2 19 7.3 1.7 2 23 637 659 636 659 0.96
9 16 0.0092 0.87 11.5 0.6 3 23 667 687 665 687 0.97
10 16 0.0022 0.21 13.5 1.6 2 23 694 715 694 715 0.98
11 16 9.1e-05 0.0086 17.9 1.5 1 23 721 744 721 744 0.98
12 16 5.6 5.3e+02 2.8 0.2 6 23 751 769 749 769 0.94
13 16 0.0092 0.87 11.5 0.6 3 23 777 797 775 797 0.97
14 16 0.0022 0.21 13.5 1.6 2 23 804 825 804 825 0.98
15 16 9.1e-05 0.0086 17.9 1.5 1 23 831 854 831 854 0.98
16 16 0.00076 0.072 15.0 0.7 3 23 860 881 858 881 0.96

Sequence Information

Coding Sequence
ATGGAAGAACATCCCAGCGTGAAAAAACCTATAAAAACTTACGTGAATACCCGAATTTCTTCTACCAAATCACCATCGAAATCTTTGAAAACTGAACGCAAAGTGCTTATCGCTATCAGGAAACCATTAACAACGAAAAAAGCTGTTGAACTGTTGTTAAAGGGCACTTTAAAGCTAAAAGTGTGCAGGTATTGTTTGAATATCGCTTACCCTCTGTCTGATTTGGATCAATGCTTCAGTATTGGAGGGCAAGGAGCTCTGTACAATGTTACGATAAGAGATATGGTCTCTTCTTTCCATCCGTTTAAGGTGGTGGATAATCCAAACCTACCAAACAAAATCTGCCCCAAATGCGTCAATCAAGCATTACATGCATACTTATTTGCTCAACAATGTGAACAAGCTGAACGGGCTTTACGTAACTGCTTAGATGACATGTACGATAAAATGCAGAAACTGGACCCGTTAGAGCCTACAAAGAAACGGGGCAGACATAAAAGTTATCCAAACCATAACATTTTACACACAGAACATGCTAAAGTTATCGATTACGCCGAACCAATTAGAAACTTGATCAATTGCAGATCAGTTTCATACACAAATGAACCAGAAATGAGTGAACTAGAATGCAAAAAGTGTTGGCAAGTTTTACCCAACGTTGAATCGTTAGCTAACCATGAGAAAATACACCCAAAAACTATGTGGTACCACTGTCGTTTGTGTGGGCACTCGTTCGTAAAGCTTCACCACATCCGAAGCCATTTGAAAACTGAACATGGTAGTAAGTCACAACCAATGACTGGGGACGTAAATTTCATGTGTAAACAATGTGGTTTTACAAGTGAAGACTATAATACGCATCTACAGCATATAGAAAAGCATAAATTTAAGAATGTCATAGAACATTTAGTAGAACGGAAAATGGATGAACTCTGCTCAATTTGTTTGGATAAAGGAGCGTTGCAAGATTTGGAGAAAACTGTTCGCCTTCATGGAGCATACCCAGAATTAACAGGCAAACGAAGTCTGTATAATATTCTTGGATCTACTATACCTGAGATGAATGTTTTGCGTAACTATACTGGATCCAAAATATGCGAAAGCTGCTTAAACTATGCTATTACCACGTATGTCTTCATAAACAGAACGCATTACATTCGGAGTAGGTTAGAAACCTGTGTCGCCAAGATGCTTGATCATCTGAATGAAATCAATGACCCTAAAGGAAACCTTTTCATAGAAATCAATCAAAACGGTATAGTTCCAACCATTGAAGATAATGATGTAGATATTGATGATATTATTGGTCAAGCTAATGTAGAAGAAAATAAACTGAAAGAAGAGGTATTGGAAGATGAATTCAGAATAAAGTCTGATACTGATAGTGATGTGGACGATCAATCAGATGTAAAAGATAATAAAAGAGAAATAACTAAAGATGAAACCAAACTACTGAATGGTTTGCGACACGCAAAAAAGATTAACATAGAAAAAGCCTGCAGCGAGTTTTTAACATTTAAAAAGAAGCCGAAAAGTGCATACAAATGTAAATTCACGTGTCCGTTGTGTTCAAAACATTTTGTATCTGACTATTTTTTGAAGAGACATGTTTTGAAGCATGGTAACAAAAATGTCGTGTGCAAAATATGCCATTTGAAATTCAAATCAAAGTTCTATTTATGTGAGCACACAAAATTGACCCACTTAATGAAAGAAAACAAAGGGAACTCTTGCAAAACATGTGGACGAGTGTTTGTGGATGAAAACAGACTATTCAAACACATGAAAACTCACATAGCTAAAGAGTGTCAACTCTGCTACAAAATATTCAACACTCAAACTAATTTCGATAGCCACATGCAACGTCATGCTTTAAAACTAAACATTTTGAGACGGAAAAGGGTTCAAACTTGCAGTTTTTGCGAAAAAGAGTGTCGCAGCGATAACGAATTATCGATTCATGTAAATAAAGTGCACTTGCAAATAAAACCTTACGGATGTGATATGTGTGAACGACAATTCTATACTGACGCGAATATGAAACAACATAAGAGGGTCCACAGTATACCCTCCAAAGAAACATGTCAAATTTGCAATAAAACTGTGAAGTCTAGGAAACGTTTAGTAGTTCACGTAAGGAAGCATTTCGGCAACAAGCCTTACAGATGTCTTATTTGCCCGCAAACGTTTTATTCGGAGTCCAAAATGAAGAGTCACATGAAAAAATGGCATGGTGGTAGTTATGGTTTTTGCGAAAAAGAGTGTCGCAGCGATAACGAATTATCGATTCATGTAAATAAAGTGCACTTGCAAATAAAACCTTACGGATGTGATATGTGTGAACGACAATTCTATACTGACGCGAATATGAAACAACATAAGAGGGTCCACAGTATACCCTCCAAAGAAACATGTCAAATTTGCAATAAAACTGTGAAGTCTAGGAAACGTTTAGTAGTTCACGTAAGGAAGCATTTCGGCAACAAGCCTTACAGATGTCTTATTTGCCCGCAAACGTTTTATTCGGAGTCCAAAATGAAGAGTCACATGAAAAAATGGCATGGTGGTAGTTATGGGTGTAGGCTGTGTAAGAAAGTTTTTGTAAATAGGAGGGGCCTCAAAAATCATGTCAATCGAGCCCATAGTGTATTTTAA
Protein Sequence
MEEHPSVKKPIKTYVNTRISSTKSPSKSLKTERKVLIAIRKPLTTKKAVELLLKGTLKLKVCRYCLNIAYPLSDLDQCFSIGGQGALYNVTIRDMVSSFHPFKVVDNPNLPNKICPKCVNQALHAYLFAQQCEQAERALRNCLDDMYDKMQKLDPLEPTKKRGRHKSYPNHNILHTEHAKVIDYAEPIRNLINCRSVSYTNEPEMSELECKKCWQVLPNVESLANHEKIHPKTMWYHCRLCGHSFVKLHHIRSHLKTEHGSKSQPMTGDVNFMCKQCGFTSEDYNTHLQHIEKHKFKNVIEHLVERKMDELCSICLDKGALQDLEKTVRLHGAYPELTGKRSLYNILGSTIPEMNVLRNYTGSKICESCLNYAITTYVFINRTHYIRSRLETCVAKMLDHLNEINDPKGNLFIEINQNGIVPTIEDNDVDIDDIIGQANVEENKLKEEVLEDEFRIKSDTDSDVDDQSDVKDNKREITKDETKLLNGLRHAKKINIEKACSEFLTFKKKPKSAYKCKFTCPLCSKHFVSDYFLKRHVLKHGNKNVVCKICHLKFKSKFYLCEHTKLTHLMKENKGNSCKTCGRVFVDENRLFKHMKTHIAKECQLCYKIFNTQTNFDSHMQRHALKLNILRRKRVQTCSFCEKECRSDNELSIHVNKVHLQIKPYGCDMCERQFYTDANMKQHKRVHSIPSKETCQICNKTVKSRKRLVVHVRKHFGNKPYRCLICPQTFYSESKMKSHMKKWHGGSYGFCEKECRSDNELSIHVNKVHLQIKPYGCDMCERQFYTDANMKQHKRVHSIPSKETCQICNKTVKSRKRLVVHVRKHFGNKPYRCLICPQTFYSESKMKSHMKKWHGGSYGCRLCKKVFVNRRGLKNHVNRAHSVF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-