Cfla002311.1
Basic Information
- Insect
- Coleophora flavipennella
- Gene Symbol
- -
- Assembly
- GCA_947284805.1
- Location
- OX369308.1:53382447-53397763[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0015 0.15 14.0 0.8 1 23 10 32 10 32 0.96 2 19 0.33 31 6.6 0.7 2 23 97 118 96 118 0.93 3 19 0.015 1.4 10.9 0.9 1 23 190 212 190 212 0.98 4 19 6e-06 0.00056 21.6 4.1 1 23 216 238 216 238 0.98 5 19 0.28 26 6.9 5.7 2 23 246 268 245 268 0.95 6 19 0.015 1.4 10.9 0.5 1 23 274 297 274 297 0.97 7 19 0.11 10 8.1 0.7 3 23 508 528 506 528 0.97 8 19 0.00018 0.017 16.9 0.6 1 23 532 555 532 555 0.96 9 19 0.015 1.4 10.9 2.4 2 23 568 590 567 590 0.96 10 19 0.0068 0.64 12.0 4.0 1 23 596 619 596 619 0.98 11 19 7.7e-05 0.0073 18.1 0.6 1 23 653 675 653 675 0.98 12 19 0.057 5.4 9.1 1.1 1 23 728 750 728 750 0.92 13 19 0.25 23 7.1 0.2 3 23 824 844 822 844 0.97 14 19 0.00013 0.012 17.4 0.2 2 23 849 870 849 870 0.97 15 19 0.1 9.8 8.2 4.8 2 23 888 910 888 910 0.96 16 19 0.0075 0.7 11.8 2.3 1 23 916 939 916 939 0.97 17 19 0.89 84 5.3 3.5 1 20 945 964 945 967 0.95 18 19 4.9e-07 4.6e-05 25.0 0.3 1 23 973 995 973 995 0.99 19 19 0.12 12 8.0 6.6 2 23 1002 1024 1001 1024 0.96
Sequence Information
- Coding Sequence
- ATGCACATGAACCAGCATTTTCCAACTCACATCTGTCCTCATTGTGGAAAAGGGTCTCCATCGAAGGCCCTTTATAATATTCATTTATCTTCACACAGCAATAACAAGAGAGCCGAGAATGGAAAGGGCAAGACACCCAAGAATGAATTCCGGCCTGAATGCCATGAAAAAGAGGATCGCAAAGATTGTTTGGAAACGAAGCACACGCTCGGTGATTGGAGAGACAACGCACACATAATTCTTGAGAGTACCAACGGCATCCCGTTCAGATGGAAACGCGGTCGTTTCCTATGTGCTTTTTGTAAAGTCGATTTCATGCAGTTTGAAGAACTTAAAAAACATTATTTAGGTCATAAAAAAAAGACCAAAACCATTGAAGATTTTCTTCGCAGCTGCAAAGTTGATTCGCGAGTCAAACTAGAAGCATCTAATCTGCTGTGCGATATTTGTTGTCAATGTTTAAAAGATATAAATGACGCTCGAAAGCATTTGATTGATAACCACGAGGTCCATTTTAACGAAGATCATGAAGTCGGTATCATTCCCTATTGTATTAAAGGAGAATACTTCAGATGCGCTATATGCGAAGAGCACTTTCAACTCTTCATAAGTTTGACAGTTCATATGAACATGCATTTTCCAACTCACGTTTGTCCTTATTGTGGAAAGACTTGTGCGACAAAACGGCTACTGACCAATCACTTGAAAACACACGTAAAAAGTGACAAAACTTCGAAATGCCACGTCTGCGGCGAAACATACAAAGAGCATCACCTTACGCTGAAACACCTCCGCGAAACCCACAATGTTGTGGTGGAATACGCATGCCCCTTATGTCCGTTAAAATTTTCGACATTCTTCTATAAAGCCAATCACATAAAGCGCGTTCACGTACAGGAATTGAAGTTTAGATGTGACACATGTTTGCAACAATGTTGCAGTAAGGATGAGATTACGCCACACATGCCGCGTAGGATAAGTCTGGACAGGTGCGATAAGCGCCGGGAAGTGACCAGCTCCGGTACCAAACCGGATATGTGGGAGCCAGCTTCTCTGGCGTCCCGAGCGGAGATCGAACCGCCAGCAGCGAAAACCGCGGGAGGGAAATCCCATGATATAGAGGACCGAAATCACGGTTTGGAAAAGAAACATGAGCTTGGTGATTGGAGAAACAACGCACAGAAAATTATTGAGAGCACGAATGCTATTCCGTTTAAATGGAAATATGGTCGATTCATGTGTGCCTTTAGTAAAGCTGATTACGTTCAGTTTAAAGAACTTAAAACGCACTATACAACACATGAAAAAAAGCTCAAAAATATAGAGCTGCTTCTTCGCAGCTACGAAAAGGATTCGCGAATTAAAGTAGAAGTATCTTTCTTGCAATGTGAAATTTGTTGCACATCATTAGAAGATATAGAAGATGCTCAAAAACATTTAACTAACATCCATAATGAACAATTTTCTAAAGATTATGAAGTTGGTATAGTGCCCTGTAGGATTAATGGGAATGATTTTGGATGCGCGATGTGCGATGAGCACTTTCCACTCTTTAAAAGTCTAATCGAGCACTTGAACAAACACTTTCCAACGCATGCCTGTCCTTTTTGCGGAAAGGCGTCGTCAACACGCGGACTTCTGAACGATCATGTAAGAAGAACACACAGCAATTTTAAGAAATCCAAGAACGGAAATAGTTCGAAATGCCAGGTCTGTGGAGAAAAATTCAAAGAGCATTACCAAAAACTTAAACACCTTCGCGAAATCCACAATATTGTGGTGGAGTACAAGTGTCATTTGTGCCCCTTAATATTTTCGACATACCAGTATAAATCCAAACATATGAAGCGCGTTCACATTCGCGAATTGAAGTTTTCATGCGACAATTGTTCGTACCAAGGATCTTGTAAGGCAGCTATTAAGTCACACATGGCTTCTCACGGCGGTAAAAGAGATTTCAAGTGCAACGTTTGTGGAAAGGGATTTGCTCTTTCGAAAACCTTATCGCTACATAAGCGAATTCACAACAAAGATAAATGGGTCTCTTGGCCCAAGTCCCATGAAAAAGGAGACCCAACAGATAGTTCGGATAAGAAACGCGCGTTCGGTGATTGGAGAAGCAACGCACGTATTATTCTTGAGTGCACAAATGGCTTCCCGTTCAGATGGCAATGTGGTCGATTCTTTTGTGCCTTTTGCCGAGCCAGTTTCGCACAGTTTGATGAACTTAAAAGACACTCTACAGAACATAAAGACAAGCCAAAAAATATTGAAGTACTTCTACGGAGTTGTCGAGTGCAGTCGCGTATAAAAGTAGAAATATCAAACCTGCTGTGTATAATTTGTTGTAAATCTTTAAAAGATATCAATGATGCTCGAAAACATTTATTTGACATCCACAAGAAATATTTTGATAAAGATCATGAAGTTGGTATTATGCCCTATTGGATCACCGGGCAAGACTTTGGATGTGCGATGTGCGATGAGCGTTTTCCACTTTTTCAACGATTGATTGTGCACATGAACAACCATTTTCCTACTAACGTCTGCCCTTATTGTGGAAAGGCGTCTGCGACCAGTTTGCTTCTGCGCAGTCATTTAAAAACACACGATGACTTTAAGATATTGAAAAATGAGAAACGCTTCAACCAAGCGCCACGAAAGTGTCAGTTGTGTAATAAACGGTTTAAAGAGCATAATCAGAAGATGAAACACCTTCGGGAGGTCCACAATTTCTTAGTAGATTACCCATGTCATATGTGCCCGGCCACGTTTACGACTTACCGCTATAGATCGTCGCACATAAAGCGCGTTCACATTCGCGAACTGAAGTTTTCTTGTGACCAATGTTCCTACAAATGTATCGGTAAGGAAGCCCTTAAGTTGCACATGGCTTGTCACGGTGGTGAAAGGGTTTTCAAGTGTGACGTCTGCGGTAAGGGCTTTGCTCGTCGTAAAACACTTGTGGACCATATGCGTATCCACGACAAAGATAAATGGCTCTCCTGTGAGTTTTGCGAATACAAATGTGCCCAAAGATGCAGTCTCAGAAACCACATGAAGAAACGTCACCCTGAAATGGATTTCAAATAA
- Protein Sequence
- MHMNQHFPTHICPHCGKGSPSKALYNIHLSSHSNNKRAENGKGKTPKNEFRPECHEKEDRKDCLETKHTLGDWRDNAHIILESTNGIPFRWKRGRFLCAFCKVDFMQFEELKKHYLGHKKKTKTIEDFLRSCKVDSRVKLEASNLLCDICCQCLKDINDARKHLIDNHEVHFNEDHEVGIIPYCIKGEYFRCAICEEHFQLFISLTVHMNMHFPTHVCPYCGKTCATKRLLTNHLKTHVKSDKTSKCHVCGETYKEHHLTLKHLRETHNVVVEYACPLCPLKFSTFFYKANHIKRVHVQELKFRCDTCLQQCCSKDEITPHMPRRISLDRCDKRREVTSSGTKPDMWEPASLASRAEIEPPAAKTAGGKSHDIEDRNHGLEKKHELGDWRNNAQKIIESTNAIPFKWKYGRFMCAFSKADYVQFKELKTHYTTHEKKLKNIELLLRSYEKDSRIKVEVSFLQCEICCTSLEDIEDAQKHLTNIHNEQFSKDYEVGIVPCRINGNDFGCAMCDEHFPLFKSLIEHLNKHFPTHACPFCGKASSTRGLLNDHVRRTHSNFKKSKNGNSSKCQVCGEKFKEHYQKLKHLREIHNIVVEYKCHLCPLIFSTYQYKSKHMKRVHIRELKFSCDNCSYQGSCKAAIKSHMASHGGKRDFKCNVCGKGFALSKTLSLHKRIHNKDKWVSWPKSHEKGDPTDSSDKKRAFGDWRSNARIILECTNGFPFRWQCGRFFCAFCRASFAQFDELKRHSTEHKDKPKNIEVLLRSCRVQSRIKVEISNLLCIICCKSLKDINDARKHLFDIHKKYFDKDHEVGIMPYWITGQDFGCAMCDERFPLFQRLIVHMNNHFPTNVCPYCGKASATSLLLRSHLKTHDDFKILKNEKRFNQAPRKCQLCNKRFKEHNQKMKHLREVHNFLVDYPCHMCPATFTTYRYRSSHIKRVHIRELKFSCDQCSYKCIGKEALKLHMACHGGERVFKCDVCGKGFARRKTLVDHMRIHDKDKWLSCEFCEYKCAQRCSLRNHMKKRHPEMDFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -