Basic Information

Insect: Coleophora flavipennella
Gene Symbol: Znf296
Assembly: GCA_947284805.1
Location: OX369308.1:22892790-22909049[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0012 0.12 14.3 0.4 2 20 188 206 187 210 0.91

2 11 1.3 1.2e+02 4.8 2.4 3 23 251 271 249 271 0.90

3 11 0.0048 0.46 12.4 0.7 2 21 363 382 362 383 0.93

4 11 0.00078 0.073 14.9 2.4 1 23 391 413 391 414 0.94

5 11 4e-05 0.0037 19.0 3.0 1 23 445 467 445 467 0.99

6 11 2.2e-07 2.1e-05 26.1 2.6 1 23 474 496 474 496 0.98

7 11 6.2e-07 5.8e-05 24.7 1.8 3 23 509 529 507 529 0.96

8 11 4.2e-05 0.0039 18.9 3.2 1 23 535 557 535 557 0.99

9 11 1.4e-06 0.00013 23.6 3.7 2 23 564 585 563 585 0.96

10 11 2.1e-07 2e-05 26.2 1.5 1 23 591 613 591 613 0.99

11 11 0.0019 0.18 13.7 0.1 1 23 619 641 619 641 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0012	0.12	14.3	0.4	2	20	188	206	187	210	0.91
2	11	1.3	1.2e+02	4.8	2.4	3	23	251	271	249	271	0.90
3	11	0.0048	0.46	12.4	0.7	2	21	363	382	362	383	0.93
4	11	0.00078	0.073	14.9	2.4	1	23	391	413	391	414	0.94
5	11	4e-05	0.0037	19.0	3.0	1	23	445	467	445	467	0.99
6	11	2.2e-07	2.1e-05	26.1	2.6	1	23	474	496	474	496	0.98
7	11	6.2e-07	5.8e-05	24.7	1.8	3	23	509	529	507	529	0.96
8	11	4.2e-05	0.0039	18.9	3.2	1	23	535	557	535	557	0.99
9	11	1.4e-06	0.00013	23.6	3.7	2	23	564	585	563	585	0.96
10	11	2.1e-07	2e-05	26.2	1.5	1	23	591	613	591	613	0.99
11	11	0.0019	0.18	13.7	0.1	1	23	619	641	619	641	0.98

Sequence Information

Coding Sequence: ATGGCCTCTGTAAAAAGAACTGAAGTAAAAATTGAGGATCTTTGTCGAACATGCTTAACGAAGGATACGGCAGAGTTGCAATCGCTTTTCGATGTTTATTTAGGAGCAATCACATTAGATTTTGTGGTCGGTTCAGTAACGGGTATAAAGATTGAACAAGGAGATGGGCTTCCATCTACGGTTTGCTATGAGTGTAAGGAAAAAGCTCAAAAAGCCTACGAGTTCAAGCAAAAATCACAGGAAGCTGACAGTAAATTACGGGGTCTATACAATAAAGAAAAAAATGAGTACTCTCAAGTGGAAGTATTTTTATATCAGTCTCAACCAGCGGGAGTGAAAACAGAGCAGATAAATTTAGATGATGCTGATGATTTCTTAGATACGGACCTATTATCAAATGGTCCTGAAGAGTGCACAGTAACAGAAAAAGTAAAAAAAGAAAAGGATGGTGATCTACTTACGCCATGTAAAAGTGGATTTCTAGCTGTTGAAGCGGCATTGAAAAACGAAACAAAAAAGAAGAAATGTATTAAAGTTGAAATTGAAGATTCCGTCAGTACATACTGTCCAATGTGTGGAACATCGTACGATGGAGCAGATACTTTAACTAAGCACATGTGGTCCCATCACTCTGAACTCATGGGGCCCAAGAAAAGGGGTCGACCTAAAAAAATAATGACCACTTCAATACTCAACAAATTATCTGAAAATGGGTTTTTCTTGAAGTCTGTACCAGTAAAAAAATTTGCATGTATTTTTTGTAAACTGCAATGCAAAACCAAAGAAGACTTAGGAAGTCATATGACGAAACATAAAGATACTAAAGTATATTGTTGTTTCTTATGTAAAAAAATGTATCTCAAGAAAAAAGATTTTGAAAAGCACTCCTGCCCGTCTAAGAGTGATAGTGCTGACAATAAAGATGCTACTTGTCTAACTGAAATTATGTTGCATGAGCTTCTCGAACCAAATTGTGATATGGACAATGTGAATGTGCTTCAAGTTTGCAGCCTGTGTTCTGGGGTGTATTTGTCTGATGAAGATCTCGCCAATCATACCGAGTTGGAGCACCCTGAGCGATCATTAAGTTGTAACAATTGCTCTAAGGTCTTCACCTCTTTAAAAACTGCAACTCGACATAGAAACATGTGCAAGCAAGTGGACAGAAAGCATATCTGCAGCACGTGCGGCTTAAAATTTGCCTATGAAATATCTCTTAACAAACACATATTAAGGCATCACGAGGGTCAGAGTGTGTCAGTATCGAGCTTTATGGACGTCGTCGAGTCCAAACCCGAATCAAAAGCAGAACAAGAGGAGGAGCCCTCGCAGTATCAATGTGACACCTGCAGCAGATGTTTCCCCAAGAAAGAATCTCTGGCTAAACATGCTAAAACTCATATGCCAGCGGAAAAAATATTCGAGTGTGATATTTGTAAGAAGAAATTTAGTAGGAAAGACAATTTACGTTCGCACAAGCGCATTCATGAGCCAAACCGGCAAAAGCCTCCGAACAATTGTTTGTGTCTGTACTGTGGACGAGGATTCACAAATTCTTCAAATTTGATTGTGCATATGCGACGCCATACTGGCGAAAAACCATATAAATGTGACTTTTGCGGCAAAGGCTTTCCGCGTTCTTCGGATCTTCAGTGTCACAGGAGATCGCACACAGGCGAAAAACCGTGCAAATGTCGTATTTGCGGAAAAGGGTTTTCACGAAGCAACAAGCTCTCACGGCACATGCGCGTCCATACCGGCCAGAAGCCGTACAAATGTACGTACTGCGAGAAGGCGTTCTCACAGAGCAACGACCTTACGCTGCACATACGACGTCACACCGGCGATAAGCCTTACATCTGTGAGGTGTGCGGCGACCGATTTATTCAGGGTACAGCGCTACAGAACCACCGGCGCGTGCATGGGCACTTCCCGCCGTCGTCGGAGCCGCCGCCGCTGCCCTACGTGGTGCCCACTCTCACGCATTCCCATTCCGCTTGA
Protein Sequence: MASVKRTEVKIEDLCRTCLTKDTAELQSLFDVYLGAITLDFVVGSVTGIKIEQGDGLPSTVCYECKEKAQKAYEFKQKSQEADSKLRGLYNKEKNEYSQVEVFLYQSQPAGVKTEQINLDDADDFLDTDLLSNGPEECTVTEKVKKEKDGDLLTPCKSGFLAVEAALKNETKKKKCIKVEIEDSVSTYCPMCGTSYDGADTLTKHMWSHHSELMGPKKRGRPKKIMTTSILNKLSENGFFLKSVPVKKFACIFCKLQCKTKEDLGSHMTKHKDTKVYCCFLCKKMYLKKKDFEKHSCPSKSDSADNKDATCLTEIMLHELLEPNCDMDNVNVLQVCSLCSGVYLSDEDLANHTELEHPERSLSCNNCSKVFTSLKTATRHRNMCKQVDRKHICSTCGLKFAYEISLNKHILRHHEGQSVSVSSFMDVVESKPESKAEQEEEPSQYQCDTCSRCFPKKESLAKHAKTHMPAEKIFECDICKKKFSRKDNLRSHKRIHEPNRQKPPNNCLCLYCGRGFTNSSNLIVHMRRHTGEKPYKCDFCGKGFPRSSDLQCHRRSHTGEKPCKCRICGKGFSRSNKLSRHMRVHTGQKPYKCTYCEKAFSQSNDLTLHIRRHTGDKPYICEVCGDRFIQGTALQNHRRVHGHFPPSSEPPPLPYVVPTLTHSHSA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00355471;
90% Identity: iTF_00355471;
80% Identity: -