Cfla027799.1
Basic Information
- Insect
- Coleophora flavipennella
- Gene Symbol
- -
- Assembly
- GCA_947284805.1
- Location
- OX369254.1:6390484-6428571[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.086 8.1 8.5 0.2 1 23 259 281 259 281 0.93 2 13 1.1 1e+02 5.0 0.1 1 21 286 306 286 310 0.89 3 13 0.013 1.2 11.1 2.6 2 23 423 445 422 445 0.94 4 13 0.0047 0.44 12.5 1.1 1 23 451 473 451 473 0.96 5 13 0.13 12 7.9 0.1 1 23 482 505 482 505 0.89 6 13 4.3e-07 4e-05 25.2 3.8 1 23 510 532 510 532 0.98 7 13 9.1e-06 0.00085 21.0 0.9 1 23 538 560 538 560 0.97 8 13 1.9e-05 0.0018 20.0 3.2 1 23 566 588 566 588 0.98 9 13 6e-07 5.7e-05 24.7 0.1 1 23 594 616 594 616 0.98 10 13 3.4e-06 0.00032 22.3 2.1 1 23 622 644 622 644 0.98 11 13 0.03 2.8 9.9 3.0 1 22 651 672 651 672 0.94 12 13 0.002 0.19 13.7 1.6 1 23 679 701 679 701 0.97 13 13 1.8e-05 0.0017 20.1 5.1 1 23 707 730 707 730 0.94
Sequence Information
- Coding Sequence
- ATGGAAGTTCTTCTCTATAATTCTACTGTTTGTAGATTATGTGGAGAGGAAAATGACAGTGGAACATTGTTATATTCTTGTGAAGAAAATAGTCAAAACTTGAGTGAAGTTATAAATACATATCTCCCAATCAAGGTATCTGACGATGGCGTACTGCCGCGCACCATATGCCCCGGCTGCACTATCCAGCTGGAGGCCACCGTGGAGTTCTTCAACCTCATCATTAGTGGACAGAAAGTTATCCGGGAACTACACCAGCGCGAAAAGGAATACAAGAAGAGTCTGCAAAAGGAACCGGAAAATATTTTAACGGAAAAAATTGTCTATGAGATCAACACCTCCGACGGTGTATACACGATCGAGCACCCTATCGCGCTACAAGTGGCTGGGTTGGAGCGCCCTAAACGCAAGCGTGGCCGCCCGCCCAAGAAGCCTAAGACTCCTCAAGAGATTGCAGAAGAAGCTGCAGTCAGGGACAGAGAACTGAAGGAAAAGGAAGAGAGTAAGAAAGAGGATGTCAGCGGAAAACGGAGAAGGAAAACTCCTACAAGGTTCAAAGGTGCTGTGCAGGGTAAGGAGCTGGAGCGCATATTCAAGGAAGAGGGCGTAACAGAGGGCTCTGAGAGCGAGGCGGAGACGCGCGCCGAGGCGCCCCAGGGGGCGGTGCCGCGCGAACCTGAGGTCATCGGCCACCTGGCGGCTTCCGGCGAGTTGGTGGTGCTTGTGCGGGGCAAGGGGCGCGGCCGACCCAAGGGTCGCATGCGCCAAACCAAGCACGAATGCGCTATCTGTGGCATGGAGTTCTCGTCTGTCGGTCGATACATGTCGCACGTAGCGCAGCACGGGCCCGTGTTGTTCCAGTGCGCCGCGTGCGAGAAGTCCTTTGAAGCCATGCTCGAGTTTCGGGCACATCAGATGGAAACTGGACACACTGGGAGGAAAGTGATGCCGTGTTCCACTGCAGCTAATGGTGAAATAAAACTAGAAAATGTGACTCCCAGCCATCATGAGCCTGACGCTACTGGCCAAGCAGAAGGGGCGGAAGAAGTAAACACTTCACTGCCATACTGTACACTCAAGCCGGAAGACAATTCGAACCCCCTGCCCCTCGGACCTGACTCTGCTACTGAAGTTAACAAGAATGAAGTTCAAACTGATGTAGAAAGCACTATAGACGTCGCCGTTGTCGATGAGACGGACCCATTGGCTGAGGCAGCAGAGCAGCCCGAGACGTCTGGCGCGAACACGAAGGAGAAAGTGAAACTCAAGTGCAACCACTGTGATAAGTTGTTTAGCTCGAAACAGAGCAAATCCATGCATATCAAGGCAGTGCACCAAGGCGAGAAACCGTACGTTTGTGTCGAGTGCGGGTGCCGGTTCGCGTACCCGCGCTCGCTCGCCCTGCACCACGTGTCGCACCGCCGCCGCGCGCGCCCGCGCCGCTACGCCTGCGACCTGTGCCCCAAGGTGCTGAACCACCCATCATCAGTGGTATACCACAAGGAAGCGGAGCACGCGGGACAGTGCTACGTGTGCAACAAGTGCGGCAAGTCGTTCAAGCACAAGCAGCTTTTGCGGCGGCACCAGCTAGTGCACACGCAGGCGCGCCCCTTCGAGTGCACGCAATGCAACGCAACATTCAAAACCAAAGCGAACCTGATGAACCACCAGCTGCTGCACTCGGGCGTCAAGAAGTTCACCTGCGAGATCTGCAAGTACAAGTTCGCGCACAAGACCAGCCTCACGCTGCATATGCGCTGGCATACCGGCTCCAAACCGTACGTGTGCAACGTGTGCGGCAAAGGCTTCAGTCAGAAGGGCAACCTGTCCGAGCACGAGCGCATCCACACCGGCGAGAAGCCGTTCGTGTGCAACCAGTGCGGGCGGCGTTTCACCACCTCGTCCCAGTACCGGCTGCACGCGCGCCGCCACCAGCCAGACAAGACCTACTACGCCTGCCAGCACTGCCCCAAGAAGTTCGCAACCCACTGCGGGTGGTTGGCGCACCGACGGAAAGAAATAAGTCGCCGGGAGCACGTGTGCGCCACGTGCGGACGCGCGTTCGCCGAGCGCTGGGCGCTGCACAAGCACAGCAGGAAGCACACGGGCGAGCGGCCCTTCCGTTGTCCGCATTGCCCGCGCACCTTTGCCGACTGTTCCAACCTTAATAAACATAAGAAGTTCGTCCACAGACAGATCAGCTTGCTCGTCAATGACAAGGACCAAGCCATGCAACAGCCGCTGCTACTGCAACAAGAGCAGTTGCTGGAACAACAGCCTACGGACGACGCACTTGACCCTGACGCACACGGCAGCGTCATCGTTATGGACTCCATGGATACTATGGACAGCGTGCAGCAGGAGTTACTAGAGCAACAGTCCGAGGAGGACGCACAGATAGACCCTGACGACGGCGTCATCGTTATGAACTCCATGGATACTATGGACAGCGTGCAGGAACAAGATGCAGACGCGGAAAGGGTCATTTATGTGGCGTATGATGTCGATGAGCCGGAGTCGACTTTCCACATTATTGATCCAGAGCAGGCGGCAGCGATAGATAGCGGCGTGGTGACGTCATGCTCGCTGTTCCCGCGAGTGCTGGCGTCGCCAGAGCCGGAAGAGGCGCCCGCGGAACTGGCGCAACCGCGGGAAGTGACTGCGCTTACAGCTCCGATGACGGACGAGCAAGGCAACCCACTGCTCTTCACGATGTCGGACGGAACGCGCCTGGCCATCACCTCCACTGACGGCAAATCGTTGCAGGTTGTCACTCAAGATGGCCAGACTATACCAGTACAAATAAATGGATACCCTGAAGAAGAGCAGGAAGTGGACTCACTCCCCAGCACTGTGCACCTGGAGCTAGACAGCGCTGCAACAGAAGCTGCGGTCACGCACTACTTTACTATTGTGTAG
- Protein Sequence
- MEVLLYNSTVCRLCGEENDSGTLLYSCEENSQNLSEVINTYLPIKVSDDGVLPRTICPGCTIQLEATVEFFNLIISGQKVIRELHQREKEYKKSLQKEPENILTEKIVYEINTSDGVYTIEHPIALQVAGLERPKRKRGRPPKKPKTPQEIAEEAAVRDRELKEKEESKKEDVSGKRRRKTPTRFKGAVQGKELERIFKEEGVTEGSESEAETRAEAPQGAVPREPEVIGHLAASGELVVLVRGKGRGRPKGRMRQTKHECAICGMEFSSVGRYMSHVAQHGPVLFQCAACEKSFEAMLEFRAHQMETGHTGRKVMPCSTAANGEIKLENVTPSHHEPDATGQAEGAEEVNTSLPYCTLKPEDNSNPLPLGPDSATEVNKNEVQTDVESTIDVAVVDETDPLAEAAEQPETSGANTKEKVKLKCNHCDKLFSSKQSKSMHIKAVHQGEKPYVCVECGCRFAYPRSLALHHVSHRRRARPRRYACDLCPKVLNHPSSVVYHKEAEHAGQCYVCNKCGKSFKHKQLLRRHQLVHTQARPFECTQCNATFKTKANLMNHQLLHSGVKKFTCEICKYKFAHKTSLTLHMRWHTGSKPYVCNVCGKGFSQKGNLSEHERIHTGEKPFVCNQCGRRFTTSSQYRLHARRHQPDKTYYACQHCPKKFATHCGWLAHRRKEISRREHVCATCGRAFAERWALHKHSRKHTGERPFRCPHCPRTFADCSNLNKHKKFVHRQISLLVNDKDQAMQQPLLLQQEQLLEQQPTDDALDPDAHGSVIVMDSMDTMDSVQQELLEQQSEEDAQIDPDDGVIVMNSMDTMDSVQEQDADAERVIYVAYDVDEPESTFHIIDPEQAAAIDSGVVTSCSLFPRVLASPEPEEAPAELAQPREVTALTAPMTDEQGNPLLFTMSDGTRLAITSTDGKSLQVVTQDGQTIPVQINGYPEEEQEVDSLPSTVHLELDSAATEAAVTHYFTIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -