Basic Information

Insect: Coleophora flavipennella
Gene Symbol: ham
Assembly: GCA_947284805.1
Location: OX369268.1:5685497-5730860[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.23 22 7.1 0.0 2 23 124 146 124 146 0.94

2 9 0.00099 0.093 14.6 0.6 1 23 153 176 153 176 0.93

3 9 2.5e-08 2.4e-06 29.0 0.1 1 23 182 205 182 205 0.96

4 9 2.2e-06 0.00021 23.0 1.7 1 23 211 233 211 233 0.95

5 9 7.8e-05 0.0073 18.1 6.1 1 23 239 261 239 261 0.99

6 9 0.0001 0.0098 17.7 0.6 2 21 269 288 268 289 0.94

7 9 1.9e-08 1.8e-06 29.5 0.7 1 23 686 708 686 708 0.98

8 9 6.7e-07 6.3e-05 24.6 1.7 1 23 714 737 714 737 0.97

9 9 7.3e-06 0.00069 21.3 3.3 1 23 743 765 743 765 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.23	22	7.1	0.0	2	23	124	146	124	146	0.94
2	9	0.00099	0.093	14.6	0.6	1	23	153	176	153	176	0.93
3	9	2.5e-08	2.4e-06	29.0	0.1	1	23	182	205	182	205	0.96
4	9	2.2e-06	0.00021	23.0	1.7	1	23	211	233	211	233	0.95
5	9	7.8e-05	0.0073	18.1	6.1	1	23	239	261	239	261	0.99
6	9	0.0001	0.0098	17.7	0.6	2	21	269	288	268	289	0.94
7	9	1.9e-08	1.8e-06	29.5	0.7	1	23	686	708	686	708	0.98
8	9	6.7e-07	6.3e-05	24.6	1.7	1	23	714	737	714	737	0.97
9	9	7.3e-06	0.00069	21.3	3.3	1	23	743	765	743	765	0.98

Sequence Information

Coding Sequence: ATGGCGCACCACTACGATACAAAAAGTTCAGACGGCTTTTGTAAGATGGCGCTGTCGTGTATGCTCGTCCTCGGCAAGAATGGAATCCGAGGCTGGCTGGACGGCACCTCCGAGAAGAACAACTGGCTAAAGCTGGTGCGGTCTACCAACTATCCTCACGATGTGAATGTACAGCATCTCCTCTTGGCCGGACAAGTGTGGTACAAGACGACGCGCGACATCCCCACTGGGCAGGAGTTGCTGCTGGGACCTAGAACGCCGCTGCCGCTTCAAGACGTGCTGACGCAGCTTGCTGATCGCCAACCGTCACTAAATACCACTCCTGCGCAGCCGTTGACAGAAGAAGAAGAAAGAGAGGACGCTGAACCACGCTGCTCTTTTTGTGATGCACCTTACCCTAATATTGACGCTCTCGATCGCCACCTGATCCAGTCGCACGCGCAGCCCGCCGCTGCGTTCCACTGCGAGCTGTGCAATCGTGCCTACAGCAGCCGTGCGCTCTTATTGCGCCACCGTGCGCTCGCGCACACCGACATCAGGAAGTATCCCTGCGAAAACTGCCCTAAGGTATTTACCGATCCTTCCAACCTTCAGCGCCACATCCGCGCGCAGCACGTGGGCGCGCGCAGCCACGCTTGTCCGGAGTGCGGGAAGACCTTCGCCACCTCTTCGGGGCTGAAGCAGCACACCCACATCCACAGCAGCGTCAAGCCGTTCCAGTGCAAAGTTTGCTTCAAGGCCTACACTCAGTTCTCAAACCTTTGCCGCCACAAACGTATGCACATCGCCTGCAGAGCGCTGATCGAGTGCCAGAAATGCGGCCAGTCCTTCACATCGTACGCTTCTCTTACTAAACACAAGAGATTCTGCGACACTGCCTCCGCTGCCAACGTCAGTCTGCGTGGACCACTGCCCCAAGGCCTTCCTCAGATACCGTCACTGCCAAACGTCGGGATGAATAATCCCAATAACGCCAACCCGTTTTCTATGTACAGAGGACCAGCTTTGCCACATCCATACAATGCTTTCGCTCACCACTACCCAGCTCTGTTCTCAGCAGCTGCAGCAGCAGCCTGCCCTCCAGACTTTTTAAACCCACTTCGCTTATTCAATGTCCAAGGAGCGAGTGTTTTGGCCATGGAACAGGAACTTGCTCTCTCAAACGCAAACATAGTGAAACAGCAACAAGAAGGCCGTATGTCTGTTAAAAGTATTGAAAGCTCAACTTCATTTGATGAGAACAAAAAGAAAGATTCGGACTTTGAAAATATGAAGAGAGACAATATTTCCGAGAGGAATTCACCAAAATCACAAAATTTGTTTGTGAAATCACCACTATCAACAGATGAAAATTCGCAACCAAGACCATTACCTGTCATGTCAATGACCACACCAATAGTTCCCTTCCACTTTTCCAGGGATGAGGCTAAGAGAAAGTCTCCTTTCAGTTTTTCTTTGAAAAATAACAACAATTTACATCACAACGACCCCATACCTCCACCTCTGCCGAAGGATCTATCGAAGAGTGTAGAAAAGGAAATCGAAAAAAACTCCGATTATTCTGACATTGAGGAAGATCAGAAGAAAGATGAAGGTGATCAACCTCTTGATTTGTCGGTATCTAAAAAGCAAAGCGACAAGGAATCAGAAGCGGATAATGACGATCGTTCCTTTCGAAACTCATCGATCAAAACGTATTCACCTCCTGAAAGCCCAATTGACAGAGAGAACAAGACACCTGAGAACGACACCACAGATGTCGACGTAGAAGGAGTAGAGCCGAAGCGGGAGGACTCGCCTCCACAGCTCGTATCCCCGCCGCTGGCATTCCCGATGCCCGTCCACCCGCAGCACATCGATGCTATGTATCGCCAGAGATTTCCGTCCTTTCACGCTGCGTCAGACGCCATCCTGAACTCCTCACACTCGCCATACGTACCGAGCCCGTTCAGTTTTTTATCCCCACTTCTTGGCACAGACGGCCCCGATAGGCAACAAAGCGTCTACACAAAATTTCGCGAGCTGAACGCGGGATCAGGAAAGTTGCGAGATCGCTACGCCTGCAAGTTCTGTGGAAAAGTGTTCCCCCGCAGCGCCAATCTAACTCGTCATCTCCGGACACACACAGGGGAGCAGCCTTACAAATGTAAGTACTGTGAGCGTTCGTTCTCGATATCGTCGAACTTGCAGCGGCACGTGCGAAACATACACAACAAGGAGAGGCCATTTCGATGTCCGTTGTGTGACAGGTGCTTCGGGCAGCAGACGAACCTAGACCGGCACCTGAAAAAGCACGAGGCGGAGGGAGGAGACTCTCCGAGCTCAGCGGACACAGAGAGGGATGACTCATACTTTGATGACATCAGATCGTTCATGGGTAAGGTGACGTGCTCGCCGGGCGCGCGTTCGCCATCGGCCGCCCCTTCGCATCCCGCACCGCCACCGCACCGCCCTTCCGCCCTCGCCATCTCCACATAG
Protein Sequence: MAHHYDTKSSDGFCKMALSCMLVLGKNGIRGWLDGTSEKNNWLKLVRSTNYPHDVNVQHLLLAGQVWYKTTRDIPTGQELLLGPRTPLPLQDVLTQLADRQPSLNTTPAQPLTEEEEREDAEPRCSFCDAPYPNIDALDRHLIQSHAQPAAAFHCELCNRAYSSRALLLRHRALAHTDIRKYPCENCPKVFTDPSNLQRHIRAQHVGARSHACPECGKTFATSSGLKQHTHIHSSVKPFQCKVCFKAYTQFSNLCRHKRMHIACRALIECQKCGQSFTSYASLTKHKRFCDTASAANVSLRGPLPQGLPQIPSLPNVGMNNPNNANPFSMYRGPALPHPYNAFAHHYPALFSAAAAAACPPDFLNPLRLFNVQGASVLAMEQELALSNANIVKQQQEGRMSVKSIESSTSFDENKKKDSDFENMKRDNISERNSPKSQNLFVKSPLSTDENSQPRPLPVMSMTTPIVPFHFSRDEAKRKSPFSFSLKNNNNLHHNDPIPPPLPKDLSKSVEKEIEKNSDYSDIEEDQKKDEGDQPLDLSVSKKQSDKESEADNDDRSFRNSSIKTYSPPESPIDRENKTPENDTTDVDVEGVEPKREDSPPQLVSPPLAFPMPVHPQHIDAMYRQRFPSFHAASDAILNSSHSPYVPSPFSFLSPLLGTDGPDRQQSVYTKFRELNAGSGKLRDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKERPFRCPLCDRCFGQQTNLDRHLKKHEAEGGDSPSSADTERDDSYFDDIRSFMGKVTCSPGARSPSAAPSHPAPPPHRPSALAIST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00943055;
90% Identity: iTF_00355467;
80% Identity: -