Cfla020539.1
Basic Information
- Insect
- Coleophora flavipennella
- Gene Symbol
- -
- Assembly
- GCA_947284805.1
- Location
- OX369278.1:907054-908595[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.6e-05 0.0016 20.2 0.3 2 23 84 106 83 106 0.95 2 14 0.0076 0.71 11.8 5.0 2 23 114 136 113 136 0.95 3 14 8.7e-05 0.0082 17.9 0.9 2 23 143 165 142 165 0.93 4 14 1.9e-06 0.00018 23.1 1.5 3 23 174 195 172 195 0.96 5 14 0.00036 0.034 16.0 0.3 2 23 203 225 202 225 0.92 6 14 0.12 11 8.0 4.3 1 23 232 255 232 255 0.97 7 14 6.8e-05 0.0065 18.2 0.5 3 23 262 283 260 283 0.96 8 14 3.6e-06 0.00034 22.3 0.1 1 23 307 330 307 330 0.97 9 14 0.0024 0.23 13.4 3.2 2 23 338 360 337 360 0.91 10 14 1.9e-07 1.8e-05 26.3 3.2 2 23 366 388 365 388 0.97 11 14 7.2 6.8e+02 2.4 3.0 2 23 396 418 395 418 0.92 12 14 1.9e-05 0.0018 20.0 2.6 1 23 424 446 424 446 0.98 13 14 0.00041 0.038 15.8 3.1 1 23 452 475 452 475 0.97 14 14 0.0015 0.15 14.0 1.0 1 22 483 504 483 507 0.91
Sequence Information
- Coding Sequence
- ATGTCGATACCAATTAAAGATGAAACAGAAAACCAGGTATATAAACAGGAAAACATTGAAGTATGGATTGAACCATATTTGGAGCATGAGATAAAAATCGAACGGGATTTATCATCGGAGAGCAACCTAGACCAACTAAACACTGTAAATACAGATGTTTTGTCAAACTCCAAGGAATCTACATCAGTGAATCATGAATTTAATATATCTGATGCTAGAGTTTACCAAAATGGAAAAATCAATAGAGTTAAATGCCCTGAATGTGATGCTACGTTCAAAAATAGAGCGAATGTTAAACAGCATTTAAGATTCGTTCATTGTTCATATGCAGATGCAGTAGAATGCAACAAATGTTTTCGAATGTTCAAATCAAAAGGCCATTTACGCTGTCATATGTTATCCGTGCATGGGGAGACAAGAGAAGTGACTTGCAACGAGTGTCAAAAAGTCTTCGCAAATGAGAAAAAATTGAAAAATCACATTTTTTATACGCACCCTCACCCAAATGCAATGGTGAACTGCACTATTTGTAACAAAACTTTTAAACAAACCTACAATTTAAAGATACATTTGAAAAAAGTTCACTCGACTGAAGAAACACTTGTTCAATGTGAGACATGTAACAAAGTATACAAAAATGAGATGCTATTGAAAAAACATGTGGAATGGAGTCATTCTGATGACGGCGTGACATACCGCTGTCATCTGTGTAGACGTGTGCTACCATCTCTCATATGCTATAAGCGACATCTAAAAAACGTTCACTCTGCAATGCAGTTGGCCTGTTCTTCGTGCCCACAAACTTTCAAAAGTATTGCTTCATTACAAAGACACATAAAAACTTTTCACAGTACGGAAACTTTCATGGAAAATAATGAAGATGTGAAACCAGACATAGCACCTAAAATATCTAAAGATTTCAAATGTTCAGATTGTGATAAAGAGTTTGCTACAAACACAGCATTGCTTTGGCATATTGAGCGGATCCATTCTGAAAATAAACAGATGACCTACTGCAAGAACTGCCAACGGGATTATTCAGACTATTCTAGCTTGAAACGACACTTAGAAGACTGTCATTCATTCCAAGACTCACAATGCAGTATTTGTAACAAGTGTTTTAAGACACCGTCTAGTTTGCAAAAGCATATTAAGGTGACACACGCACCACCGTCAGCACAACAGACATGCCAAATCTGTATGAAAACATACAAATGCATTTTGCATTTACGAGTGCATATGAACGCTGTGCACTCTGACAAAGGTACTTTCTCGTGTGATGTATGTGATAAGAAATTTTCTTCAAAAAAATACATGGTCAAACATAGGAAAATACACGATAACGTGGGGAAACACCCATGCCATTTCTGCAAAGCAATGTATAAATCTCCTGAGAACGTCAAAAAGCACATCAGAAGGGTGCACAATATAAATTTGTACGATATACATAAATGCATGGAGTGTAACTTAGAGTTCCCTAATAGCCAGACATTAGAGTTGCATATTAGGCAACAAAACCATATGAAGAAGTTAAATGTATAG
- Protein Sequence
- MSIPIKDETENQVYKQENIEVWIEPYLEHEIKIERDLSSESNLDQLNTVNTDVLSNSKESTSVNHEFNISDARVYQNGKINRVKCPECDATFKNRANVKQHLRFVHCSYADAVECNKCFRMFKSKGHLRCHMLSVHGETREVTCNECQKVFANEKKLKNHIFYTHPHPNAMVNCTICNKTFKQTYNLKIHLKKVHSTEETLVQCETCNKVYKNEMLLKKHVEWSHSDDGVTYRCHLCRRVLPSLICYKRHLKNVHSAMQLACSSCPQTFKSIASLQRHIKTFHSTETFMENNEDVKPDIAPKISKDFKCSDCDKEFATNTALLWHIERIHSENKQMTYCKNCQRDYSDYSSLKRHLEDCHSFQDSQCSICNKCFKTPSSLQKHIKVTHAPPSAQQTCQICMKTYKCILHLRVHMNAVHSDKGTFSCDVCDKKFSSKKYMVKHRKIHDNVGKHPCHFCKAMYKSPENVKKHIRRVHNINLYDIHKCMECNLEFPNSQTLELHIRQQNHMKKLNV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -