Cfla002313.1
Basic Information
- Insect
- Coleophora flavipennella
- Gene Symbol
- -
- Assembly
- GCA_947284805.1
- Location
- OX369308.1:53411824-53415452[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00013 0.012 17.4 0.4 1 23 79 102 79 102 0.93 2 18 0.0063 0.59 12.1 0.5 1 23 175 197 175 197 0.98 3 18 0.00044 0.041 15.7 0.1 1 23 201 223 201 223 0.97 4 18 0.049 4.6 9.3 1.4 1 23 228 251 228 251 0.89 5 18 0.00055 0.052 15.4 2.1 1 23 257 280 257 280 0.97 6 18 7.4e-05 0.007 18.1 0.1 1 23 287 310 287 310 0.98 7 18 7.5e-05 0.0071 18.1 1.0 1 23 316 338 316 338 0.95 8 18 1.1e-06 0.0001 23.9 1.6 1 23 344 366 344 366 0.99 9 18 6.6e-05 0.0062 18.3 5.4 1 23 372 394 372 395 0.96 10 18 0.57 54 5.9 0.6 1 23 533 556 533 556 0.95 11 18 2 1.9e+02 4.2 0.3 2 23 581 603 580 603 0.92 12 18 0.035 3.3 9.7 0.1 1 23 627 649 627 649 0.96 13 18 0.0005 0.047 15.5 0.2 1 23 653 675 653 675 0.98 14 18 0.046 4.3 9.4 1.1 1 19 680 698 680 700 0.84 15 18 0.037 3.5 9.6 0.4 2 23 710 732 710 732 0.92 16 18 0.031 3 9.9 7.2 1 23 739 762 739 762 0.96 17 18 0.00016 0.015 17.1 2.5 2 23 769 790 768 790 0.97 18 18 4.6e-05 0.0043 18.8 0.6 1 23 796 818 796 818 0.99
Sequence Information
- Coding Sequence
- ATGACTAATTATATAAAACTGAGTGAGAAACGCAATGATGATGCAATTATTTTATCATTTCTAGGTCAAGATGAGAGACTGCACATGGATTCTGCCCAGAGAAAATTTATGGATATAAATAAGATTGCACGGAATATTGTTTTGGAATTAAAAGAAAGGAGAAAGATGATAAACAATACAGTGATATTACTAGAAAGCTCAAAAATATGCCCATTCAAGTGGTCGAAAAACTACTATTTATGTTTATTTTGTGATGAAAGCTTTTCTGATCCAGCAGATCTTAGAAAACACTACACATCAAATCACGTTCTACTGTTGTCAAAACAAATAAGGCATGCTTTAAGAACACTGAAAAAGTTCGATTTACTGAAAGCTGATATAACGGATGTCGGGTGCAAACTATGTGAAGATAATATTCCTGATTTAGAAAAACTTAAGTTTCACTTAGTAGCTGTGCACAACAAAGGTTTAGATCTCGAATCTAGTTTTGGAGTATTACCTTTCAGGCTTACTAAAACAAATTTTAAGTGTGCTCTGTGCGAAGAAAATTACGAAGAGTATAAAACACTAAACACTCATATGAACGTACACTTTCAAAACTTTATCTGTGAACAGTGCGGTGCAGGTTTTATAACTCCTGAGCGTTTACGTCGTCATACGTCTTCTCATGAAACGGGGTCCTTTAGTTGCGAGAGCTGCAACAAAGTGTTTCGCTCCAAATTGTCCAAGAGTCAACACTACGCTAACATCCACGAACAAGTCAAAAGACACAGATGTCCAGAATGTCCTGAAACGTTTAGAAACTACTTTCAGCGCAGCAAACATATATCCACCATCCACGGTCTCAAACTCAAGGAGTTCAAATGCAGCATGTGTCCAAAAGTCTTTACTGTAAGCGGAAAATTGGGAGTGCACGTACGTTCCGTACACCTCAAAGAAAAACGCCATGCTTGTGATGTGTGTGAATGGAAATTCTATTCAAAATCCGAGCTAAAAGACCACATGGTCAAGCACAGTGGTGAAAGAAAATATCAGTGTAGCGTTTGTAAGAAGTCCTACGCTAGAAAGTATACCCTTTCTGAGCACATGAGGATACATGAGAATGATAGGCGATATACATGTGCTATTTGCGGTAGGGGATTTGTTCAGAAGTGTAGTCTGAAGCATCACCTCAAAGTACATCATCCTATAATGCCTGCAGTGAGCGGTGCGATGAAAGTATCAGAGTCCGTTCTAAGATCGGATGCATCTGAAATAGCATCGGAAAAGCAACCACAGCAAAAAAGGATCGTCCCGTTATTTCAAGTGGCGTACGATAGAAGTTTGTGTAGACCTCTTGGGACAATAATGGACTTCAGTAAATCAGGAATGGAAAGAAACATTCCCAAAAGCAGTAGTGAGGTGGAGACTTTTTTTCCATCTCGTAGTGTTTCACCAGACTTGATGGATGCCCATACTCCAGAGAGCAAAGATCTGAATCCATCTGTAGAAGTTTTACGACCGAAAGCTCCCGAGAATAAAGTCGACAGTCGACTAAATGCACTCATCGTTTTTGAGTTTTCAACAGTCTACCCATTTATTTACGGCAATAACAAATTCAAATGCTTCGTTTGCTCTCAACCGTTCCTAGAAATGTCTGTTCTAAGACAACATATGAAGGAAAATCATAATTTTGGTCCATTGAAAAGATTAGTCAACAACCGAAGAGAAAACATATTAAAAGTAGATGTCAGTGAAATTATGTGTAAATTATGTTCGTTTAGTCCCAGTGGCTTATCAGAATTAAAATCTCATTTAAAACAAGATCACAATAAAGCAGTACAAGTAGATTTGCAAGACAATTTAATACCGTTTAAATTAGATGGAGCCGAGGGATCTTACAGATGTGTTATTTGCGATGAGACCTTCATAAAAGTACGGATATTGGTTATACATATGAGCGTACATTTTAACAATTACAGTTGTGAAATTTGCGGCTCAGGGTTCATGACTCTACGTTTACTGAAGAAACATTTGGAGGTTCACGAGAACGGAAACTTTCCGTGCGACAAATGCAGCAAAGTGTTCAGCACTTCTCAAAAGCGTTCGCTTCACAATAGATGCGTGCATCTAAAACAATTTCCTCGTCGATGTCCGATGTGTCCGGAGAGGTTCAACTCGAATTATCGACGGACGATACATTTGCAGGATGTCCACAACATATCAACTAGGGTGCATAAATGCGAGACTTGTGGCCGATCGTTTAACTTAAAGTATCATCTTATATGCCACACGCGGTCAGTTCATCTCCAAGAACGGAATCAGCAATGCGACGTTTGTCTCCAGAGATTTTGTAATAAGGAAACCTTGAAACGACACATGATTGTACATACTGGGGAAAAGAACTACAAGTGCGAAGTCTGTGGAATGGCTTTCCTGAGAAGGAAGAATTTGAAAGACCATTTACGATTACATGAGATAGTGCAGTAG
- Protein Sequence
- MTNYIKLSEKRNDDAIILSFLGQDERLHMDSAQRKFMDINKIARNIVLELKERRKMINNTVILLESSKICPFKWSKNYYLCLFCDESFSDPADLRKHYTSNHVLLLSKQIRHALRTLKKFDLLKADITDVGCKLCEDNIPDLEKLKFHLVAVHNKGLDLESSFGVLPFRLTKTNFKCALCEENYEEYKTLNTHMNVHFQNFICEQCGAGFITPERLRRHTSSHETGSFSCESCNKVFRSKLSKSQHYANIHEQVKRHRCPECPETFRNYFQRSKHISTIHGLKLKEFKCSMCPKVFTVSGKLGVHVRSVHLKEKRHACDVCEWKFYSKSELKDHMVKHSGERKYQCSVCKKSYARKYTLSEHMRIHENDRRYTCAICGRGFVQKCSLKHHLKVHHPIMPAVSGAMKVSESVLRSDASEIASEKQPQQKRIVPLFQVAYDRSLCRPLGTIMDFSKSGMERNIPKSSSEVETFFPSRSVSPDLMDAHTPESKDLNPSVEVLRPKAPENKVDSRLNALIVFEFSTVYPFIYGNNKFKCFVCSQPFLEMSVLRQHMKENHNFGPLKRLVNNRRENILKVDVSEIMCKLCSFSPSGLSELKSHLKQDHNKAVQVDLQDNLIPFKLDGAEGSYRCVICDETFIKVRILVIHMSVHFNNYSCEICGSGFMTLRLLKKHLEVHENGNFPCDKCSKVFSTSQKRSLHNRCVHLKQFPRRCPMCPERFNSNYRRTIHLQDVHNISTRVHKCETCGRSFNLKYHLICHTRSVHLQERNQQCDVCLQRFCNKETLKRHMIVHTGEKNYKCEVCGMAFLRRKNLKDHLRLHEIVQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -