Cfla030377.1
Basic Information
- Insect
- Coleophora flavipennella
- Gene Symbol
- -
- Assembly
- GCA_947284805.1
- Location
- OX369285.1:6813052-6826209[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.012 1.1 11.2 0.9 3 23 205 226 204 226 0.94 2 23 5 4.7e+02 3.0 1.1 4 23 571 592 569 592 0.84 3 23 0.075 7.1 8.7 0.6 1 21 597 617 597 618 0.96 4 23 0.00063 0.059 15.2 0.8 2 21 693 712 692 713 0.93 5 23 0.052 4.9 9.2 0.1 2 23 721 743 720 743 0.95 6 23 0.74 70 5.5 0.9 3 23 763 784 761 784 0.95 7 23 0.01 0.94 11.4 3.4 1 23 790 813 790 813 0.95 8 23 0.15 14 7.7 0.0 1 23 838 861 838 861 0.90 9 23 0.022 2.1 10.3 3.4 1 23 866 888 866 888 0.97 10 23 0.0095 0.9 11.5 0.2 1 23 894 917 894 917 0.97 11 23 0.0024 0.23 13.4 1.7 1 23 930 952 930 952 0.97 12 23 0.00021 0.02 16.7 1.8 1 23 999 1022 999 1022 0.97 13 23 0.00064 0.061 15.2 5.3 1 23 1080 1103 1080 1103 0.98 14 23 0.0016 0.15 14.0 2.1 3 23 1131 1152 1129 1152 0.95 15 23 0.011 1.1 11.3 0.2 2 23 1158 1180 1157 1180 0.94 16 23 0.012 1.1 11.2 0.2 1 21 1225 1245 1225 1246 0.95 17 23 0.0012 0.12 14.3 0.2 1 23 1256 1278 1256 1278 0.93 18 23 0.00013 0.013 17.3 0.3 2 23 1370 1392 1370 1392 0.93 19 23 3.9e-07 3.7e-05 25.3 1.4 3 23 1399 1419 1398 1419 0.98 20 23 0.0023 0.21 13.5 0.1 1 23 1437 1459 1437 1460 0.95 21 23 0.34 32 6.6 0.0 1 23 1481 1503 1481 1503 0.97 22 23 0.025 2.3 10.2 0.5 1 23 1509 1532 1509 1532 0.95 23 23 0.0003 0.028 16.2 0.4 1 23 1541 1564 1541 1564 0.96
Sequence Information
- Coding Sequence
- ATGAATGTGAATTATGCTCGTGTTTGTAGACTGTGCTTGTCATCTCGAGGTGAAATACTGCCGATATTTCATACCACCAGTTCCGATGACTCGGAACCTCCCGTCCTAGCTTCGAAAATCAAGGAATGTGTGTCTGTTCAGATATATGAAAATGACTACCTGCCAACTAATGTCTGCAGGAAATGCATGGACAATGTCAACAACTGGCACATTTTTAAGACAGTATGTGAGAGGACACAAAACAAACTGCATTCTCTTATTAAAAAAGATGGCAGCCAACTAGAAGAGGTGAATGTCAAAAGTGAGCCATTGTCAGATGAGGCTTATGATGATGGAGTGGTCATTGATGGCTCCTACCCTGATTCAGAGCTACCGGGACCAAGCAAACTGCAGCCGGAAGGGCCACCGATCTTGGCATCGTTGGGGCTCACACCAAGGAGTGATAAGGGTATAGAAAGTGAGAATAATGAAGAAGAAGAGGAGGTGGAGGAGACGGGCGAGGCGGAGCATGCGCAGGCTCCAGCCATGCCGGAGGTTTCCATCACGGTGATGCGGCCCACCGGCGAGACGCTGCACTCGCGGCAAGGCATACAGCAGCTCGCCTCTAAAGACTGCCTTGTTTGTGGACGCTCCTACCGCTACTCGCACAACGCACGCCGTCACGAGCTCTCCGCACACTCCTTCGACAGGTACACCAACAAAGTAACTCACAAAAAGTCACACTCACACATGCAACCAAAACTTAGACCGAACCCGTTTAATCCGAAAGCGAGGCTGATGCCTAACCCTATCCACAAAATGCATCTCATACCTAAACCGGTACCTCATAAAGTGATACCTCAGAACGTAGTTGCGCCATCGAAATCGGTACCGATCAAGCCAACTAAAACTCAACATAATAATTTGCCGTATCCACTTCGTATCAAGGCGTTGAAGGACCTTCAAATAAAGAAAAAGGAACCGCAAATTTTGAAAACCCTTCTTACTAGTAAACCTGAAGTGCTAGTGTCTGAACCTGAATTATTAAATTCTACTCCAGAGAGCCCGGAGACATTGATATCTGAACCAGAAATTGCGTCTTTTCAAGTGGAAGCTATTTTATCAGAGCCTGATGGCTATGATCAACAAAACGACGAAGTTGATGGTGAAGCGCAAAACGATCAAGGTCAGAACTATGATACGGTGGACATGGGCTCCGATAATGAAATAGAGATAGCTAGAGAAAAAGAAAATGAAAATACAGATGAAGTGACCCAGAATGAACAGGAAGAGGAGAACATGGATCATGACGGAAAAGACGGAGAAGATAATCCAGAGGATGAAATAGAAGAAGGAGAAATTATTGAAGATAAAAATGAACATAAAACCAAAGAAGAAGATGACCAAGAAGGTGAAGAAGACCGAGAAAATGAAAATCGCGAACAGGATCACCTAGCAAACAATGAAGAAAATGAGGTTGAAGACAATGCTCCTCCTGTGGAGCTCACACCGATGACAGATATAAATGAAGACATGCAAACTAATTCTTGCAGAAGTGAAATCAATGAAGAAGATAATGACTTAGATATGACTGCCGATCCCAACGAAAATGTTGATGCTGACGACGGCATCAAAGAATTAGATCCCAATAAATTATATGTGACCAAAACCCAAAGGGACTTTATATCGAAGTTTCGTGATATAATCCAACAAGTAAATACAAAACGTTGTCTATGCTGTGACAAGGAGTATCCTCGTAGAAAGGCTGTTATTCAACATTTACAGAAGAATGGACACAAAGTCCCAAAACACACGTGCTATAATTGCGTAGTGACTTTTTCACATATAGGAGCTTTATTGAGCCACATGAGACAAAACTCTTGCACTGATTTGTGGAAAATTATTTATAATGAGAATGGTATAACTGATGACTTGGTACTCGAAAAAGAACCTAGAAATCTCAAAGCACAGTACAAAGACATTTTGAATGCTAGATCTTACGGATGCAAGCTTTGCCCGGCAAAATTCCAACTAAAACAGTTCATTAATAAACACATCTTGGATTGTCACGAAGATGGCCAGTCTGGGGTGCCATTGGTATGCGTTCATTGTGGTAACAGGTTCAAAGATAAGAACCTTTTGAAGAGGCACGTCCGCAGCGCAGAATGCCTCATATACATATCTTGCGAAATGTGCCCAGAGAAATTTGGGAATTTACAAGAATTTACCGAACATGCTTTAACATCGCACATTGATAATTTAGACCAAGACAATTCAAATAAATGTGTTGATGTACGCCCTACTGATTGCTCTTTTTGTGGAAAAAAGAACAGCAGTTATCTTTCTTTGGTTAAGCATTTGAAAATTTATCACAACGAGGATAAACCCCATTACTGCCAACATTGCGATGCTAAATTTGAACAAACTAATGATCTTAACAACCACATCTATAAAGCACACTCTGATTTGTCGGGTGCACCCATTATTGAGCCAGACATGTCCCTGGTCAAAGAAGAGGCTGAAGAATACCACTACTCTTGTACAGAATGCAATGCTATATTTGAAACTGTCGATGCTTGGACAGATCATCAAGTGGCCGAGCATAACCAGGTTGCTCATCATTGTGACCAGTGCGAGAAGAAGTTCTTGAGACCATCAGAACTAGCCGAGCATAAAAACACACACTTGCGCGTCAAGTTTTACCCATGCAGCGTATGCTCTAACTCCTACAGTACTCCACAAAAGCTATCTGATCATGTCCAAAGAGTACATCCGGGAGCAGCTGCACATGCGTCATCAGATACTGAATTTTTCTGTAACATTTGCATTAGATCATTCAAGAGTCGCCAGGCTTATTCGAACCATATGCGTATACATTCAAAAATACCAACAACGAACAGGAGACCACAAGACAATAAAGGCTTTTCCCCACAAATTATTGGAAAATCAATAAAAATGACCAAAATTCAACAAGGGTTCATCTTTAAACCTAACTCGAATGTACCCAACGCACCCTACTCGTGTGATATATGCGGTAAAGGATTTATGCACAAGAAGAATATTTGGAAACATAAGAAGGTGTTACATGCGGATCTTGTAAGTGACAGGAATGATAGCGAAGAAAACACTATGCATGCCTCCACGGAGGAGGACGAGTACAATGTCGACGAGAACGGGATCGCTTTGTCAACACCACAATTCAACAGCTTCACGTTTGAGAACTTTGCAAATAATACGATACAAACGCAAGCTGAAGTTTACACTTGCCACATTTGTTATCAACGGTTTTCATTCAAAGATGCTTTGAAGAAACACAAACTTACAAAGCACAGAAACTTGAATCCTAGTACTAGTAATAGCTCGGAGACTCAAACGCAAGGGACTGGCGAGAGCAGTAGCTCCAGGTCTAATTGCACTATCTGTAAGATATCATTCACAGATAAAAAATCATACTACCGCCATAGAAAGAATGTTCACAAGAATACATCACAAATGTGTAAAATCTGTGGTAAACCACTCAGTTCGACACAAGAACTCTATGAACATTTGAAAGCCACGCATGCTCGAGAACTTTTAGGATACAATGAAGACCAAGGTTCTAGTAAAACACAAGATGTCTTAGTACCAGAGGTCGAGCTCGAATATGATGGGGATCAAGACTCCGTGGATCCCAGTGGAGACTATCAGGCTAGGTACCCCTGTGACACTTGCGGTAAACAATTCGTTGGACTGCTGGCCTTGCAGAACCACCAGTGCATAAACCAGATTACATCACAGCCATCAACGTTCGATTGCGAGATTTGTAACAAGAGCTACACTTCCATCGCCGCGCTGAAGAGTCATCGAGGCTGGCACTTGCGATCCCCTGATGGGAAGGCGGCTGCTAACAATTCTGGATTGTGGATGCCCCAGCATAAAGTCACCAACAAAGTGAGTAAATTTGAGGTCCTCGACCCCTCGCAGCTAGCTCGCGTGCAGCACAACGCGCCCACCGCGCCGAGCGCCGTCGTCAAGCGGCGCCTCCCGCCGGAAGTCGAAGTGACCGTCGTCAATCCAAATAAGAAAATGCGCTCTGATGGCTCCATCGAAATGGACAGCCACAACATGTCGGGCGTATCCGACGACAGATACTGTACGATTTGCGACAAGGAGTTCACGAAGCGAGCGGCGTACCAGCGCCATATGGACGAAGTTCACCAACCGAACTCTGTATTCTGTCCGGTGTGTGACAAGAGTTTTACTCGGAAATCGACGTTGCTTGTGCATATGAAGAAGCACTACGAAGGCGGCGAGGGTAGTTCGGCGATGGGGCACGTGGAGGAGGAGACGTACGCTTGCGAGCTGTGCGGCGCGGAGTACGATAGCGCGTCGGCGCTGCGCGTACATCGCGCGCGTCACCACGCCGACGAGTCCGACCACGACTCGGAAGAGGAGGCGGGCATGGCGAGCGCGCCGGGCGAATTCACGTGCGCACAGTGCGGCGACGGCGTAGCTACGCCGCGCGACCTACTCGCACACCGCACCATGCACGCCACACCTACAAAGTACTTCTGCAACATCTGCAAAGTGTACTTTGCGCGCGCGCTCGACTTGTCCTCACACACGCGCGCGCGCCACTCCGACACCGACAAGAGTGCCATGTTCCCGTGCGCCATGTGCGACCGCTTTTATATGAACAAGAAGAGCCTACAGCGGCACATTGAGATGGCTCACTGA
- Protein Sequence
- MNVNYARVCRLCLSSRGEILPIFHTTSSDDSEPPVLASKIKECVSVQIYENDYLPTNVCRKCMDNVNNWHIFKTVCERTQNKLHSLIKKDGSQLEEVNVKSEPLSDEAYDDGVVIDGSYPDSELPGPSKLQPEGPPILASLGLTPRSDKGIESENNEEEEEVEETGEAEHAQAPAMPEVSITVMRPTGETLHSRQGIQQLASKDCLVCGRSYRYSHNARRHELSAHSFDRYTNKVTHKKSHSHMQPKLRPNPFNPKARLMPNPIHKMHLIPKPVPHKVIPQNVVAPSKSVPIKPTKTQHNNLPYPLRIKALKDLQIKKKEPQILKTLLTSKPEVLVSEPELLNSTPESPETLISEPEIASFQVEAILSEPDGYDQQNDEVDGEAQNDQGQNYDTVDMGSDNEIEIAREKENENTDEVTQNEQEEENMDHDGKDGEDNPEDEIEEGEIIEDKNEHKTKEEDDQEGEEDRENENREQDHLANNEENEVEDNAPPVELTPMTDINEDMQTNSCRSEINEEDNDLDMTADPNENVDADDGIKELDPNKLYVTKTQRDFISKFRDIIQQVNTKRCLCCDKEYPRRKAVIQHLQKNGHKVPKHTCYNCVVTFSHIGALLSHMRQNSCTDLWKIIYNENGITDDLVLEKEPRNLKAQYKDILNARSYGCKLCPAKFQLKQFINKHILDCHEDGQSGVPLVCVHCGNRFKDKNLLKRHVRSAECLIYISCEMCPEKFGNLQEFTEHALTSHIDNLDQDNSNKCVDVRPTDCSFCGKKNSSYLSLVKHLKIYHNEDKPHYCQHCDAKFEQTNDLNNHIYKAHSDLSGAPIIEPDMSLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCSVCSNSYSTPQKLSDHVQRVHPGAAAHASSDTEFFCNICIRSFKSRQAYSNHMRIHSKIPTTNRRPQDNKGFSPQIIGKSIKMTKIQQGFIFKPNSNVPNAPYSCDICGKGFMHKKNIWKHKKVLHADLVSDRNDSEENTMHASTEEDEYNVDENGIALSTPQFNSFTFENFANNTIQTQAEVYTCHICYQRFSFKDALKKHKLTKHRNLNPSTSNSSETQTQGTGESSSSRSNCTICKISFTDKKSYYRHRKNVHKNTSQMCKICGKPLSSTQELYEHLKATHARELLGYNEDQGSSKTQDVLVPEVELEYDGDQDSVDPSGDYQARYPCDTCGKQFVGLLALQNHQCINQITSQPSTFDCEICNKSYTSIAALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTNKVSKFEVLDPSQLARVQHNAPTAPSAVVKRRLPPEVEVTVVNPNKKMRSDGSIEMDSHNMSGVSDDRYCTICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLLVHMKKHYEGGEGSSAMGHVEEETYACELCGAEYDSASALRVHRARHHADESDHDSEEEAGMASAPGEFTCAQCGDGVATPRDLLAHRTMHATPTKYFCNICKVYFARALDLSSHTRARHSDTDKSAMFPCAMCDRFYMNKKSLQRHIEMAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -