Cfla020596.1
Basic Information
- Insect
- Coleophora flavipennella
- Gene Symbol
- -
- Assembly
- GCA_947284805.1
- Location
- OX369278.1:1688468-1752581[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.00051 0.048 15.5 2.2 1 23 244 266 244 266 0.97 2 23 0.0013 0.12 14.2 1.9 1 23 273 295 273 295 0.98 3 23 8.8 8.3e+02 2.2 0.3 1 23 299 321 299 321 0.92 4 23 3.7e-05 0.0035 19.1 4.1 1 23 326 349 326 349 0.97 5 23 4.2 3.9e+02 3.2 0.0 2 23 353 375 352 375 0.90 6 23 0.0044 0.42 12.5 0.6 1 20 379 398 379 400 0.95 7 23 5.1 4.8e+02 2.9 0.0 2 23 412 434 411 434 0.92 8 23 0.045 4.3 9.4 0.3 1 23 439 462 439 462 0.95 9 23 5.7e-05 0.0054 18.5 0.4 1 23 476 498 476 498 0.98 10 23 6.3e-07 5.9e-05 24.7 1.2 1 23 504 526 504 526 0.98 11 23 0.089 8.4 8.4 1.3 1 20 532 551 532 553 0.93 12 23 0.00013 0.012 17.4 0.8 1 23 779 801 779 801 0.97 13 23 0.0033 0.31 12.9 1.5 1 23 808 830 808 830 0.98 14 23 5.4 5.1e+02 2.8 1.2 1 23 834 856 834 856 0.95 15 23 2.2e-05 0.0021 19.8 2.2 1 23 861 884 861 884 0.97 16 23 5.1 4.8e+02 2.9 0.1 2 23 888 910 887 910 0.90 17 23 0.018 1.7 10.6 0.4 1 20 914 933 914 935 0.95 18 23 1.5 1.4e+02 4.6 0.0 3 23 948 969 947 969 0.93 19 23 0.01 0.96 11.4 0.6 1 23 974 997 974 997 0.95 20 23 0.0011 0.11 14.4 0.4 1 23 1014 1036 1014 1036 0.98 21 23 1.3e-06 0.00012 23.6 1.3 1 23 1042 1064 1042 1064 0.98 22 23 0.012 1.1 11.2 2.7 1 23 1070 1093 1070 1093 0.95 23 23 0.00015 0.014 17.2 3.5 1 23 1099 1122 1099 1122 0.98
Sequence Information
- Coding Sequence
- ATGGAAAAAACATTGAGCACTTTTAAGGACGACACATCAATGGGCCCTGATGGCATACCGATTACAACAGAATTCGTACAAAACACAGACAGAAAAATTTTTAAATTAACTTTTTCCACTACAGCCCCAGAAACTAATGATTATATACCCAAAACGGAGTCTCAAAACGTAAAAGGTAGAACTACAAGAAAACGAAAATGCAAAGAGAAACATCTCGATAATGAACTAAATGACGTTGTAAAGGAAGAAGTGTTCATTGAATCAAACTCTGCTGATGATAAGATTGATGCAGATAATATAGCCGATTTTGATGACGAAAATGCTTCATTAGATGAATACTTGGCTCCAGATTTTTATATAGCTAACAAACGAGATGGGGAGAAAATTGAGACTGATATCAAAAGCGAAGATAATGTAGACAGCACAGATGTATATTCACTAAGAAGTAAAAAAAATAAGAGAAAGCTACTAACAGATCTAACAGAGGAGGTTAAAAAGAAGAAATCTAAAACGAAAAAGGTAAAAGACGAATTAATTGACGCCAATTTAGAGAATTTAAAGGATAACGTTGTGGTTCCTAAGAAAAAGCGGATGTTTAATAGAAATTCTGAAGAAGATTTCAAGAGTTTCGCTAAAATGTACAATGCAGACGTAATATTTTTGACACGAGAACAACAGATGGCAGAGCTACAGGCTAGGAAAGAGTCGGAGGATTATATTAGTGCAAGATTTCAGTGCAAAGAGTGCTATAGGAGTTTTATGAAGGAAAGTGCGTATACGAAACATATGACCTGGCATGACCCCAGTAGCGGCAGTCACGTGTGCGACATATGCAAGATTCGATACCCGACCAGGACCAAACTGTTGAGTCATTTAAGGCGACATAGAATGCATTTCATATGTCAAGTCTGTAATACTATCAGCAAAGAGACTGCAACGGCTAAGCTACATTACAAGTGGCACGAAGGATTCAAATACGAGTGCAAACACTGCGGGAAGAAGTTCAACAAATCCAGCACTTACATGAACCACGTGCGCGAGAATCACAGCGCGCTGACGTGCGAGCTGTGCGGCGAGCCCGTGCAGGGCACGAGGGGGCTGACTGCGCACAAGGCCAGCTTGCATGCTGGGAAATTCAAATGCAGTTCGTGCGATGCACAGTTCCACTCAAAGGAGGCGCTTACGAGACATATCGAGAACATTACTGATGATGGGTGTGATCCTTGCGTTAAGCCGTGTGCGCAGTGCGGAGCTGGTTTTCTGACTGCGCAAATGCTGTTAGAGCACATTTCTTTAGCGCACAAGGACAAGATATTCCGGTGTGAAAAGTGCAACACGATATATAGTAGCGACCGTCAGCTCGGAATACATTGGTCGCGCGCGCACAAGGGCCAGCGGCGCGGCGCGCGCTCCGGCGACGCCGAGTACATGTGCGAGGTGTGCGGTAAGAACTACGCGAATGAAACATTGCTACGGTACCACCAACGATTACACACCGGAGAGAAGCCGTTCGAGTGCACCATGTGCCCCAAACGGTTCCGCACGAAAATCAATCTGCAGGTTCATTTGAACACCCACACAGGCGCTCGCCCCTACAAGTGCGCGCTTTGTCCGGAGACCTTCAAATCTTATGCGCAGAAACATAAACACAAATTATTGATTACAACAGAATTCCTACAAAACACAGACAGATCATTTTTTAAAATACCTTTTTCCGCTACAGCCCCAGAAACGAATGAATATATACCCAAAACGGAGTCTCAGAACATCGATGTACAAGTTAGAACTGCAAGAAAACGAAAATGCAAAGAAAAACATCTTGATGCTGATCTAAATGACATTGTAAAGGAAGAAGTGTTCATTGAATCGAACTGTGTTGATGATAAGATTGATGCAGATAGTATAGCCGATTTTAATGACGAAAATCCTTCATTAGATGAATACTTGGCTCCAGATTTTTATATAGCTAACGAACGAGATGGGGAGAAAATTGAGACTGATATCAAAAGCGAAGATAATATAGACAGCAAAGATGTATATTCACTAAGAAGTAAAAAAAATAAGAGAAAGCTACTAACAGATCTAACAGAGAAGGTTAAAAAGAAGAAGTCTAAAACGAAAAAGGTAAAAGATGAATTAATTGACGCCAATTTAGATAATTTAAAGGATGAAGTTGAGGTTCCAAAGAAAAAGCGGTTGTATAATAGAAAGTCTGAGGAGGACTTCGAGAGTTTCGCTAAAATGTACAATGTAGACGTAATATTTTTGACACAAGAACAACAGATGGCAGAGCTACAGGCTAAGAAAGAGTCAGAGGATTATATTAGTGCAAGATTTCAGTGCGAAGAGTGCTATAAGAGTTTTATGAAGGAAAGTGCGTATACCAAACATATGGCCTGGCATGACCCCAGTAGCGGCAGTCACGTGTGCGACATATGCAAAGTTCGATTCCCAGCCAGGAACAAACTGTTGAAACATTTAAGGCGACACAAAATGCATTTCATATGTAAATTCTGCAATACTATCAGCAAAGAGAGTACAATGGCTAAGCTACATTACAAGTGGCACGAAGGATTCAAATACGAATGTCAACACTGCGGGAAGAATTTCAACAAACCCAGCTCCTACATGAACCACGTGCGCGAGAATCACAGCGCGCTGACGTGCGAGCTGTGCGGCGAGCCCGTGCAGGGCACGAGGGGGTTGACTACCCACAAGGCCAGCTTGCATGCTGGGACATTCAAATGCAGTTCGTGCGATGCACAGTTTCACACAGAGGAAGCGCTTACGAGACATCTCGAGAACATTACTGGTCACGGGTGTGATCCTTGCGTTAGGCCGTGCGCGCAGTGTGGAGCTGGTTTCCTGACCTCACAAATGCTGTTAGAGCACATGTCTTTAGCGCACAAGGACAAGATATTCCGGTGTGAAAAGTGCAACACGACATATAGTAACGACCGTCAGCTCGGAATACATTGGTCGCGCGCGCACAAGGGCCAGCGGCGCGGCGCGCGCTTCGGCGACGCCAACGAGGGCGACTTCATGTGCGAGGTGTGCGCTAGAAGCTACCCGAGTGAAACAACGCTACGGTACCACCAACGAATACACACCGGAGAGAAGCCGTTCGAGTGCACCATGTGCCCCAAACGGTTCCGCATGAAGACCAATCTGCAGGTTCATATAAACACTCACACAGGCGCTCGCCCCTACAAGTGCGCGCTGTGTCCGGAGACCTTCAAATCTTATTCGCAGAAACACAAACACAGATTATTGGTGCACACGAAGGAGCGCCGCCACAAATGCCACATGTGTGAGAAAACATATGTGGTCTCCTTCGACCTCAAGATGCACATCCGCACCGCGCACATGAAGATACCGCTCCCGCCGAGGAACCGGCGGCGGAACCAGCCGCCTGTCAACAACCcatag
- Protein Sequence
- MEKTLSTFKDDTSMGPDGIPITTEFVQNTDRKIFKLTFSTTAPETNDYIPKTESQNVKGRTTRKRKCKEKHLDNELNDVVKEEVFIESNSADDKIDADNIADFDDENASLDEYLAPDFYIANKRDGEKIETDIKSEDNVDSTDVYSLRSKKNKRKLLTDLTEEVKKKKSKTKKVKDELIDANLENLKDNVVVPKKKRMFNRNSEEDFKSFAKMYNADVIFLTREQQMAELQARKESEDYISARFQCKECYRSFMKESAYTKHMTWHDPSSGSHVCDICKIRYPTRTKLLSHLRRHRMHFICQVCNTISKETATAKLHYKWHEGFKYECKHCGKKFNKSSTYMNHVRENHSALTCELCGEPVQGTRGLTAHKASLHAGKFKCSSCDAQFHSKEALTRHIENITDDGCDPCVKPCAQCGAGFLTAQMLLEHISLAHKDKIFRCEKCNTIYSSDRQLGIHWSRAHKGQRRGARSGDAEYMCEVCGKNYANETLLRYHQRLHTGEKPFECTMCPKRFRTKINLQVHLNTHTGARPYKCALCPETFKSYAQKHKHKLLITTEFLQNTDRSFFKIPFSATAPETNEYIPKTESQNIDVQVRTARKRKCKEKHLDADLNDIVKEEVFIESNCVDDKIDADSIADFNDENPSLDEYLAPDFYIANERDGEKIETDIKSEDNIDSKDVYSLRSKKNKRKLLTDLTEKVKKKKSKTKKVKDELIDANLDNLKDEVEVPKKKRLYNRKSEEDFESFAKMYNVDVIFLTQEQQMAELQAKKESEDYISARFQCEECYKSFMKESAYTKHMAWHDPSSGSHVCDICKVRFPARNKLLKHLRRHKMHFICKFCNTISKESTMAKLHYKWHEGFKYECQHCGKNFNKPSSYMNHVRENHSALTCELCGEPVQGTRGLTTHKASLHAGTFKCSSCDAQFHTEEALTRHLENITGHGCDPCVRPCAQCGAGFLTSQMLLEHMSLAHKDKIFRCEKCNTTYSNDRQLGIHWSRAHKGQRRGARFGDANEGDFMCEVCARSYPSETTLRYHQRIHTGEKPFECTMCPKRFRMKTNLQVHINTHTGARPYKCALCPETFKSYSQKHKHRLLVHTKERRHKCHMCEKTYVVSFDLKMHIRTAHMKIPLPPRNRRRNQPPVNNP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -