Basic Information

Insect: Coleophora flavipennella
Gene Symbol: -
Assembly: GCA_947284805.1
Location: OX369308.1:52726802-52739310[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 31 0.0032 0.3 13.0 0.8 2 23 23 45 22 45 0.96

2 31 0.054 5.1 9.1 0.5 2 23 66 88 65 88 0.90

3 31 0.026 2.4 10.2 0.7 1 23 151 173 151 173 0.93

4 31 0.013 1.2 11.1 0.0 3 23 201 222 199 222 0.94

5 31 0.031 2.9 9.9 3.0 2 23 243 265 242 265 0.95

6 31 0.00017 0.016 17.0 1.8 1 23 270 293 270 293 0.94

7 31 0.0037 0.35 12.8 0.3 1 23 297 320 297 320 0.97

8 31 0.012 1.1 11.2 2.0 2 23 323 345 322 345 0.95

9 31 0.016 1.5 10.8 3.0 1 21 446 466 446 469 0.90

10 31 1.9 1.8e+02 4.3 4.8 1 23 541 564 541 564 0.95

11 31 0.0011 0.1 14.4 2.4 3 23 571 592 570 592 0.92

12 31 0.0096 0.91 11.5 0.6 1 23 597 620 597 620 0.93

13 31 0.0079 0.75 11.8 1.2 2 23 626 648 625 648 0.93

14 31 0.009 0.85 11.6 5.8 1 23 652 675 652 675 0.98

15 31 0.00011 0.011 17.6 0.7 2 23 682 704 681 704 0.96

16 31 0.097 9.2 8.3 1.6 1 12 710 721 710 723 0.89

17 31 0.017 1.6 10.7 1.0 1 23 758 780 758 780 0.96

18 31 2.6 2.4e+02 3.8 0.0 3 23 809 830 807 830 0.86

19 31 0.0032 0.3 13.0 0.3 2 23 851 873 850 873 0.94

20 31 0.00016 0.015 17.1 0.5 1 23 878 901 878 901 0.96

21 31 0.0002 0.019 16.8 1.2 1 23 906 929 906 929 0.96

22 31 0.011 1.1 11.3 0.3 2 23 932 954 931 954 0.96

23 31 0.035 3.3 9.7 1.9 1 21 960 980 960 981 0.95

24 31 0.039 3.7 9.6 3.6 1 23 1035 1058 1035 1058 0.96

25 31 0.013 1.3 11.0 0.3 2 23 1131 1153 1130 1153 0.96

26 31 3.2e-05 0.003 19.3 0.3 3 23 1160 1181 1159 1181 0.94

27 31 0.017 1.6 10.7 1.9 2 23 1186 1208 1185 1208 0.94

28 31 0.0009 0.085 14.7 2.8 1 23 1213 1236 1213 1236 0.97

29 31 1.7e-05 0.0016 20.1 4.9 1 23 1240 1263 1240 1263 0.98

30 31 0.00083 0.078 14.8 0.3 2 23 1270 1291 1269 1291 0.96

31 31 7.2e-05 0.0068 18.2 1.5 1 23 1297 1319 1297 1319 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	31	0.0032	0.3	13.0	0.8	2	23	23	45	22	45	0.96
2	31	0.054	5.1	9.1	0.5	2	23	66	88	65	88	0.90
3	31	0.026	2.4	10.2	0.7	1	23	151	173	151	173	0.93
4	31	0.013	1.2	11.1	0.0	3	23	201	222	199	222	0.94
5	31	0.031	2.9	9.9	3.0	2	23	243	265	242	265	0.95
6	31	0.00017	0.016	17.0	1.8	1	23	270	293	270	293	0.94
7	31	0.0037	0.35	12.8	0.3	1	23	297	320	297	320	0.97
8	31	0.012	1.1	11.2	2.0	2	23	323	345	322	345	0.95
9	31	0.016	1.5	10.8	3.0	1	21	446	466	446	469	0.90
10	31	1.9	1.8e+02	4.3	4.8	1	23	541	564	541	564	0.95
11	31	0.0011	0.1	14.4	2.4	3	23	571	592	570	592	0.92
12	31	0.0096	0.91	11.5	0.6	1	23	597	620	597	620	0.93
13	31	0.0079	0.75	11.8	1.2	2	23	626	648	625	648	0.93
14	31	0.009	0.85	11.6	5.8	1	23	652	675	652	675	0.98
15	31	0.00011	0.011	17.6	0.7	2	23	682	704	681	704	0.96
16	31	0.097	9.2	8.3	1.6	1	12	710	721	710	723	0.89
17	31	0.017	1.6	10.7	1.0	1	23	758	780	758	780	0.96
18	31	2.6	2.4e+02	3.8	0.0	3	23	809	830	807	830	0.86
19	31	0.0032	0.3	13.0	0.3	2	23	851	873	850	873	0.94
20	31	0.00016	0.015	17.1	0.5	1	23	878	901	878	901	0.96
21	31	0.0002	0.019	16.8	1.2	1	23	906	929	906	929	0.96
22	31	0.011	1.1	11.3	0.3	2	23	932	954	931	954	0.96
23	31	0.035	3.3	9.7	1.9	1	21	960	980	960	981	0.95
24	31	0.039	3.7	9.6	3.6	1	23	1035	1058	1035	1058	0.96
25	31	0.013	1.3	11.0	0.3	2	23	1131	1153	1130	1153	0.96
26	31	3.2e-05	0.003	19.3	0.3	3	23	1160	1181	1159	1181	0.94
27	31	0.017	1.6	10.7	1.9	2	23	1186	1208	1185	1208	0.94
28	31	0.0009	0.085	14.7	2.8	1	23	1213	1236	1213	1236	0.97
29	31	1.7e-05	0.0016	20.1	4.9	1	23	1240	1263	1240	1263	0.98
30	31	0.00083	0.078	14.8	0.3	2	23	1270	1291	1269	1291	0.96
31	31	7.2e-05	0.0068	18.2	1.5	1	23	1297	1319	1297	1319	0.98

Sequence Information

Coding Sequence: ATGCTTTTCAGTTTAGATGATACAAATTCAAGTAAAACGCCAATTGGTTTTGATGTATCTGGGATTAAATGTCAAATATGCAAGCAATCCTACGGCAAATTGAAAGACTTGACGCAACATTTAAAATCCGAGCACGGTATAAATTACAATAACAAAGTGCAATTACCATTCAAGAGTTTTTTGTTAAAAGATATTAAGTGCCTAGATTGTGACGAGAAATTTCGTTATTTCTCATTTCTTTATGACCACGTAACTGAAGAACATAGAGATGTAGACAGTGAAATTGTTAATTATGATCAACAAGCTACTAGAGAAAAGAAAATATTGGCAATTGAAGAAACTAATAATGAAAACCGGACAAAGAAGGCCAATATTGTTATGCTCAGAAAGCGAAACCTGCAGACATTGTTCAACAATACCTCGATTGTACCTTTTAAATGGCGAGGGTGTTACTTGTGTTTCTACTGTGGGGAAGATCTTAAAAGCTACAAAGAGTTAAGGAAGCATACGGAGGCTCATGGCCCCTGTGCCGACACTGACCGTGGTTTGAAATTGGTCACAACCGTTGATGAAGTAAAATTAGATGTCTCAGACATCAATTGTAATATTTGTGGCGGAACGTTTCCAAATTTGGATGAAATAACAAATCATTTGATGTGGACCCACAATTTGCCATATTATGAAGACGTAGGATTATTAATTACTGTTTATCGCTTGTCTGATCTTCAGTGCTTGCATTGTGATCAAAGTTTTATGTACTTTAAGCACCTTGTCTCACATGTCAATATTATGCATCCTATCAACACATTCATATGCAGTGACTGCGGCCAGAAATTTAACAAGAAAAGAGACTTACGGAATCACAGCCGAGCATTTCATAGAAGCGAATATTCTTGTGATAAATGTCCTTCCAGTTTTGAAACAAATGCAGCTCTTGCATTGCACAAAAACAAATACCACTCTTGTGTTTGCAATATTTGTCTTAGAACATTTACGTCTTCAGTGGAAAGGTTGAATCATATGAAAAACGATCATAATCTCAACACCGGCGCGCTGAAATGTTGTTTTTGCGAAAAGATTATGGACACCAAGTTGGTTTTCTTGAGACACGCTGCTCAGTGCAACGTTGAATTCGCTGATCAGACTTGTGAGGATGAAGGTGACGATCAAAGGACACCTGTTAAGAAACTGAGGAACAATATAGCGCGTGACACTGTGCAGGCGCTTGCTGTTGAAAGCGACAGTCTAAGAGCACGTATTAGGAAACTGAGAAACAATATAGCGTGTGTATTCAATATGACTACTGTTATGCCGTTTAAGCATTACTTGAATAGGTTTAAATGCTTCTATTGTTCAGAGTACTTCACCGACTGCGAGGAATTGAAACAGCATACTGTTGGAGAACACCCTGTTTGTGATGTAAAATATAAAAGTATGAGACTAAAGAACATCGCATCGCATTATATGAGAGTTGACATATCAGAATTACGGTGTAAGGTGTGTTATAAAACAAAATTAGACTTGAATACTTTGATTGATCATTTGGTCTCCGATCATAAAGCGCAATATGATAAATCATTGCCTCTGGTCTTTGAACCGTTTAAATTAATTTCTAGGAATTTTCCCTGTCCGCACTGCGATCACGTTTGCTTGTATTTCAGCACATTACTGAAACATGTCAGTAAGGACCATGCTGAGAATAGGAACATTTGCCCACATTGTGGTGAATGTTTTAGGACAAAGAATAGTCTAAGTGGTCACGTGGTACGCTACCATCGTACTGCAAAATTTAAATGTGACAACTGCACTTCCACGTTTACGTCCGTCACTGAATTGATAAAGCATAAAGGTATGGCACATGACGTGAAGTACCTAACGTGCCCGCAATGTCCTGAGATGTTTACTACTGAATACAAGAAGCGTCGCCATTTAATACATGTACATGATAAAGGTTTTAAATGTGCACATTGCGATAAGATGTTCCCGCACCATTCGGTCATGTTGAACCATACTCGACGTGTGCATCTAATGGAGAAAAATTGGCAGTGCCCAATGTGTGAGAAACGTTTTTTTAATTCGAACCGGCTTAAAACTCACATGAATATAGTACACACAGGGTTAATAAACTTTGAGTGTGATCATTGCGGGAAGAAATTTCGTTATGAAAACCCGCCAGGTCAATACGACGCTTATACGTGCGAGCAGCGGAGGAAAAACTTGGAAATATTGTTCAACAACACAACAGTAATGCCATTCAAGTGGCGCGGAAAATACATTTGCTTCTATTGCGGCCTGAACTACGTAGAGTATTCGGAATTCAAAAAGCACACCGTGTCACACGGCGCTTGTTCGACCAAAGATTACGCTCTGAAGCTCGTTAAAGGGAATTTCATTGAAGTAAAAATAGATACATCTGAAATAAATTGTGACATCTGTAACGAGCCTTTTGGCAGTGTGAACGAAATTATCGATCATCTAATCGGAAAACACAATTTGGATTACGACAAAGATGTCGACATGTTTTTGCAAGAATACCGTTTGGTTGATTGTCAGTGTCTGATATGTGGCGAAGTATTTGCGTACTTTGGTTACCTTGTGAATCATGTCAATATTTATCATCCAGAAAATTCATTTATCTGCAACGAATGTGGAGCCACGTTTAATAAGAAAAGGGACTTGGCTGCGCATTTTAGAAACAATCATAAGGAAGGAGGATACCCTTGCGAGCTATGTTCACAAACATTCACGACGCGTCAGCTTCTGAAAGCACACCAGTACAGTTATCATGTTATTAAGTGCACTATATGTAATGCAGCTTTCTTGTCGCGTGCGACGCTAAAAAAACACGTGAAGTCTGAACATCCTGATGATGGCGATTACAAGTGCGGTTATTGTAACAAAGAGAGTCATTCGAAACAGGGACTAAAACAGCATTTGTCCAAGTGTAAAATAAAAATGGCTACAGTGTGTGATCAGGCCACTGATCAAGCTATCATTCTCAGAAACTTACCTAAGAGAAAGCAGAACGTTGTTCCAATTCGAAAGAATATCATATGTGTATTGAACAACTCAACTGCGATACCTTTTAAATTTTTTTCAAAGTACTCGTGCTTTCACTGTACGAGACATTACGTAGACTTCGAAGACTTAAAACAACATACTATCGTAGAGCATCCTGTGTGTGATTTAAAATCTAAAAGCATAAAAAAATGTAAAGGCGAAAGGACGAGTGTAAAAATAGATATATCCTCTTTAGCTTGTAGGCTATGCAGCCAACCCATAGAAGAATTAGACGCTTTGATAGACCATCTTATTTTAAATCACAACGAAAGCTACGATAAATCTATAAAAGGTTGCTTGGAACCTTACAGGATTATTAAAGACAACTTACCCTGTCCAGTGTGCAATAGTACGTTTAAATATTTCGGCATACTACAAAGGCACATGAATTCTCAGCACAGCGAACATAAGAATATTTGTGACTTTTGCGGACGCAGTTTTAAAAATGTTTCTAATTTAAAAGTCCATATAGCTTACACGCACACTGGAGCAGTGGAGTGCGATGTATGCTCGCTCAAATTTAAAAACCAGTGGTGCCTATCCCGGCATAAAGCAAAACTCCACGACGCGAAGGATTTCAAATGTCCAAAATGTCCTGAAATGTTCCAATCACAATACCACAAACAAAAACACTTGATCAAAGTACATGATGAAGGGCACAAATGTAATTATTGCGGCAGAATGTTCACCAGAAACTCGTTCATGAAAGACCATATTAGGCGAACGCATTTGAAAGAGAAAAATGTACCGTGCTCGGTTTGTAATGAGAAGTTCTTTGATAATTATCTGTTGAGGATGCATATGGTAAAACACGAGGGTGATAGGAAGTTTACTTGCACGGTCTGTGGCAAGTCTTTCCTGAGGAGGAGTAATTTGTATTCGCATACTGAGATGCATAAAAAACATGGCCATGGGCACATGGCCGTATAA
Protein Sequence: MLFSLDDTNSSKTPIGFDVSGIKCQICKQSYGKLKDLTQHLKSEHGINYNNKVQLPFKSFLLKDIKCLDCDEKFRYFSFLYDHVTEEHRDVDSEIVNYDQQATREKKILAIEETNNENRTKKANIVMLRKRNLQTLFNNTSIVPFKWRGCYLCFYCGEDLKSYKELRKHTEAHGPCADTDRGLKLVTTVDEVKLDVSDINCNICGGTFPNLDEITNHLMWTHNLPYYEDVGLLITVYRLSDLQCLHCDQSFMYFKHLVSHVNIMHPINTFICSDCGQKFNKKRDLRNHSRAFHRSEYSCDKCPSSFETNAALALHKNKYHSCVCNICLRTFTSSVERLNHMKNDHNLNTGALKCCFCEKIMDTKLVFLRHAAQCNVEFADQTCEDEGDDQRTPVKKLRNNIARDTVQALAVESDSLRARIRKLRNNIACVFNMTTVMPFKHYLNRFKCFYCSEYFTDCEELKQHTVGEHPVCDVKYKSMRLKNIASHYMRVDISELRCKVCYKTKLDLNTLIDHLVSDHKAQYDKSLPLVFEPFKLISRNFPCPHCDHVCLYFSTLLKHVSKDHAENRNICPHCGECFRTKNSLSGHVVRYHRTAKFKCDNCTSTFTSVTELIKHKGMAHDVKYLTCPQCPEMFTTEYKKRRHLIHVHDKGFKCAHCDKMFPHHSVMLNHTRRVHLMEKNWQCPMCEKRFFNSNRLKTHMNIVHTGLINFECDHCGKKFRYENPPGQYDAYTCEQRRKNLEILFNNTTVMPFKWRGKYICFYCGLNYVEYSEFKKHTVSHGACSTKDYALKLVKGNFIEVKIDTSEINCDICNEPFGSVNEIIDHLIGKHNLDYDKDVDMFLQEYRLVDCQCLICGEVFAYFGYLVNHVNIYHPENSFICNECGATFNKKRDLAAHFRNNHKEGGYPCELCSQTFTTRQLLKAHQYSYHVIKCTICNAAFLSRATLKKHVKSEHPDDGDYKCGYCNKESHSKQGLKQHLSKCKIKMATVCDQATDQAIILRNLPKRKQNVVPIRKNIICVLNNSTAIPFKFFSKYSCFHCTRHYVDFEDLKQHTIVEHPVCDLKSKSIKKCKGERTSVKIDISSLACRLCSQPIEELDALIDHLILNHNESYDKSIKGCLEPYRIIKDNLPCPVCNSTFKYFGILQRHMNSQHSEHKNICDFCGRSFKNVSNLKVHIAYTHTGAVECDVCSLKFKNQWCLSRHKAKLHDAKDFKCPKCPEMFQSQYHKQKHLIKVHDEGHKCNYCGRMFTRNSFMKDHIRRTHLKEKNVPCSVCNEKFFDNYLLRMHMVKHEGDRKFTCTVCGKSFLRRSNLYSHTEMHKKHGHGHMAV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -