Cfla017060.1
Basic Information
- Insect
- Coleophora flavipennella
- Gene Symbol
- -
- Assembly
- GCA_947284805.1
- Location
- OX369253.1:2222672-2247737[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 28 5.1 4.8e+02 2.9 0.8 3 23 137 158 136 158 0.91 2 28 0.0015 0.14 14.0 1.0 2 23 164 185 163 185 0.96 3 28 0.4 38 6.4 0.1 3 23 221 241 219 241 0.94 4 28 4.5e-05 0.0043 18.8 1.6 1 23 247 270 247 270 0.97 5 28 4e-05 0.0038 19.0 0.3 1 23 276 298 276 298 0.97 6 28 1.8e-05 0.0017 20.1 0.5 1 23 304 326 304 326 0.96 7 28 0.0051 0.49 12.3 3.5 1 23 486 509 486 509 0.93 8 28 0.062 5.9 8.9 0.1 1 23 514 537 514 537 0.95 9 28 0.019 1.8 10.6 2.3 1 23 542 564 542 564 0.96 10 28 0.005 0.47 12.4 1.8 1 23 569 591 569 591 0.97 11 28 4.3e-05 0.004 18.9 0.0 1 23 598 621 598 621 0.90 12 28 0.00071 0.067 15.0 0.6 1 23 627 649 627 649 0.97 13 28 0.0059 0.55 12.2 3.5 1 23 655 677 655 677 0.98 14 28 0.31 29 6.7 0.3 2 23 687 707 686 707 0.89 15 28 0.00013 0.012 17.4 0.2 1 23 711 734 711 734 0.97 16 28 0.00015 0.015 17.1 0.2 1 23 742 765 742 765 0.94 17 28 5.1 4.9e+02 2.9 0.3 1 23 797 820 797 820 0.85 18 28 0.0082 0.77 11.7 0.3 1 23 825 848 825 848 0.96 19 28 0.01 0.97 11.4 0.8 1 23 853 875 853 875 0.98 20 28 0.00015 0.014 17.2 1.0 1 23 880 902 880 902 0.97 21 28 0.00065 0.062 15.2 0.3 1 23 909 932 909 932 0.91 22 28 0.00094 0.088 14.7 3.7 1 23 938 960 938 960 0.98 23 28 7.3e-05 0.0069 18.2 0.3 1 23 966 989 966 989 0.96 24 28 1.3e-05 0.0012 20.6 0.5 2 23 995 1016 995 1016 0.97 25 28 0.00016 0.015 17.1 0.6 1 23 1020 1043 1020 1043 0.92 26 28 1.1 1e+02 5.0 0.5 2 23 1059 1077 1058 1077 0.84 27 28 0.00067 0.063 15.1 1.4 1 23 1082 1105 1082 1105 0.97 28 28 0.086 8.1 8.5 4.2 1 23 1111 1134 1111 1134 0.94
Sequence Information
- Coding Sequence
- ATGTCTGGATCTGGAATATGGAACTTGAATGCTTTGTGCCGCTGCTGCCACGCCGACGGCGTGTTTAAGAGTCTGCAGGCTCCATATGTTCACGACGGGGCTATAGAGATTTACGCCGTGCTTCTGCGCGACACTTTCGGGATACACATCAACCCCCCAACAGTTGAGGCAAGTTATGCGATCTGCGGGTGCTGCATCGACCAGCTGCGGCTTGCTTACTGCTTCAAGAAAAAAGTGTTAGCATGTGAGAGAAAGTTCGAGGAGTATTGTAAAAACGAACAAACCGTCGCTACATCAGTTAACGTTAAGATTGAAATTGAAAATGGCAACGATAATATAAATTCAGATGTGGATGGCGATGATCACTATGATGTCGGTGACAGCGATGGCGAACCAGAGATCGTATTTTGTGAAGTTTGCCACGCAAAGTTCGAAGACGTGCAATCGAAACGGTCCCACTTGCTCGAGGTGCACGTGGCCGACGGGTTGTCTTGCAAACTGTGCAAGAAGACATTCGACAATCGCAACGCACTGGGGGCGCATTCCAAGACGCACGAGAAGAAAATATTGCATTGCAGATTCTGCGTTGAAGTGTTCGTCTCAAAAAATGCAAGGGACGACCACGAATATCATCAGCATATAAAATTGAATGGATACGGCTGCGATCAGTGTCGAATGTCATTCGATGCCAGGGATCGTCTCATAAAGCACATCGGCTGGCATCGACAGGCGAACGAGTTCGTTTGCCACACGTGCGGCAAAGGCTTCAAAAAGGCCCACCCTTTAAAAGTACACATTGAAACTGTTCATCAGAACCAGAGGTCGTTCCAGTGTAGCCAGTGCGGCAAAGCGTACAAGTCGAAAGCCGCGTTGATCGCACACAACTACACGCACACTGGCGAGCGTCCTTTTAAATGTCCAGTGTGTCCGAAGGGTTTCAAGAAAAGGAATGATTTAACGTATCACATGGATGGGCATGAGCTCAGGGGGGAAGTTGAGGGGAAAATTGGCGAGGGTGTTGGCTGGAGTTTGGGTGGTCATGATGGTTGTGCTGATGACGGCGACGATGATTGGGCAGAAGACAGTGATGGCGGTTTCGATAACGTCGGCTTGGTGAATGATTCGGAAATTGAGATTGAAATTGAAGAAGAGAAAGCCATTGAGATAGAAATTAAACCGGAGAAGGAATCGAAGCCGGGCGCTCGAGCCGTTATTGACGCCAACGCTGTTAAAGTGAAAACTGAAGTATGCGCCGAGGATGGCCCGGATGATGATGGCGATCATACGTACGAAGATTATAACAACGAATTCCAAGATGAGATTGAAGAATATAAAGATGGCAAAAGTTATGAAGTCAAAATAAAAGAGGAGACCAAAAAAGGAGTAAAGAGCAAAAGCAACACACACACAAAAGAACGCGTCAAAAGATCATCACATAAAAGCGATGTGCCGACATACACTTGCGATTTTTGCAGCAAACAGCTCACATCGAAAAGTCATTTGCGAGATCATTACTTAGACCAACACGTTCCAGACGACTTCTCCTGTACGCTGTGCAACTTGCCTTTTGGGGGGCGAAACGGTCTCATCCAACACCTGATGTTGAGACACGAAAGAAAGACATTCTTCTGCCGATACTGCGTTGAAACCTTTACGTCGTCAAATGCTCTTCACGAACACGAGAACTCCCATACTAACGACGAATACATTTGCGACTACTGTCGGAAAGTGTTCAAGTGGAAGTTGACGTTGCAGCGTCACGTGAAGTACCACATGGGGAACTTCAAGGAGTTCGCGTGCGAGACATGTGGGCGCGCGTTTCGTGTTCAAGCGAACTTGAGAAGACACGTCGCGGCCGTCCACCACAAGGTGAGACCGTTCCCATGCGATGTGTGCGAAAGGTCTTTTGTGCTGAAAAAGGACTTGGTCTCCCATAGGAGATTCCATACTGGCGAAAGACCGTTCAAATGTGACGTGTGCACGAAAGGTTTCGTCAGCGAATGTCTAATGAAGAAGCATAGGCTGAAGCATAAGGATGTTAGGAGCAAGGAGGGTGTGCAATGTGATATCTGTGGCAAATACTATCCGAGTTACGCTATGAAACAGCATAAGGACTCGCATACCAAGCCTTATAAATGTGAGCTGTGTGGCATAGGATATGGGCAGAAGGCGAATCTTATGCGGCATAAGCAATCTGTGCACATGGATGTTCAAAATGACACGTTTACGTGTGACGTGTGCGGCGAGGGGTTCAACCAACGGGCGGCGCTGATACGTCACAAGAGCAACAAACACACCGCTGGTGTGGCACATCGGAAAATAAAACCCAAGGCCAGCGTCACAAAAGAACGCGCTCAAAGTGTATCACGGAAACGGAAAACACCGAAATACACCTGCGACTTTTGTGACGAGCAACTCGCTTCTAAAAATATATTACAAGAACATTTCTCCAACGAACACGTCCCGGACGACTTCTCGTGTACGCTTTGCCGCTTGCCTTTCGCAGGGCGAACGGATCTTATCAAGCACCTTTTATCGAAACACGAGAAAAAGTCATATTACTGTCAATTCTGTGTCGAAACTTTCAAGTCGATCAACGCTTTGAATAATCACGAGAATTCTCACACCAAAAGCGGATACGCCTGCGATTATTGTCAAAAAGTTTTCAAGTGGAAAACAACTTTGAGACGACATATTAATTGGCACATGGGAAATTTCAAAGAATTCGCTTGCGAAACTTGCGGACACTCTTTCAAATTGGCTATCAACTTGAGGCGACACGTTGAGGCTGTGCACGAGAAGCTGAGACCTTTCCACTGCGACCTCTGTGATAAGGCTTATTCAACGAAAAGGCTTTTGGACACGCACAAGAGACGCCACACTGGCGAGAAACCCTTCGCATGCGATGTTTGCTCAAAACCTTTTGTTAACAAATCCAATATGTTAGCTCACAGACAAAGGCTGCACGGGGAAAAGGAAAGGGTTTGCGATGTGTGCGGCAAACAGTTCGCGAGTTCATCAGGGCTGGTGCAACACATGCACACACACACGAAGCCTTTTAGTTGTCATCTCTGTGGCGAAGGATTCAGTGATAACGCTGCCTTAATGCGCCACGAGACAAACAAACACACACATGGACATGAACAAACAACTTCGAATATCAAACGTAATCTAACGTGTGACATTTGCAATAAAACTTATTTAAACTGGGAGCTGCATCAAAGGATGCACGATAAGAAACCATTCAAATGCCACCTTTGCGACAAATTTTACGCGGAGCAAATCACTTTAGACCGACACATGAATCTAGTGCATTACAAAGTGAGAAAACACTCGTGCGATATCTGCAATAAACTGTTTACTAGACCGGAGTGTGTCCGGTTACATAAGGAGAGAAAACATAATAGTGATCGACAGAAAATGAAGAAGGAACGGAAAAATAAGAGTAAAGCAACAAAACTTAACAAAAATAAAAATGAAGATCGTCCAACTGTCAAAGTAGAGGCAACGGAGTTTGACGGTAACTTTGACAGCGTCGTTCCCGCGTACGAGATACCCAAAGTAGGGTTTACAGATGATGCTAGTTCAGTGCCAGCTGCTGGAAATTCTGTGTTGGTATCGTTTGAAAAGTACGAAAACGCCGCGCGGCTGCGCGCGCTCGCCCCCATACAAACTATGGTCGAAGAGGAGGCCGCGTGCGGCTGCCAGCGGCCACGCGCGGCTGCCGGCGGCGGCGCGAGCCGGCTCCGACGGTATCTACTCGCCGCTGCCGGCCGCTCCCAGCCGCTGCCGGCCGCTGCCGTCGCGGTGTGA
- Protein Sequence
- MSGSGIWNLNALCRCCHADGVFKSLQAPYVHDGAIEIYAVLLRDTFGIHINPPTVEASYAICGCCIDQLRLAYCFKKKVLACERKFEEYCKNEQTVATSVNVKIEIENGNDNINSDVDGDDHYDVGDSDGEPEIVFCEVCHAKFEDVQSKRSHLLEVHVADGLSCKLCKKTFDNRNALGAHSKTHEKKILHCRFCVEVFVSKNARDDHEYHQHIKLNGYGCDQCRMSFDARDRLIKHIGWHRQANEFVCHTCGKGFKKAHPLKVHIETVHQNQRSFQCSQCGKAYKSKAALIAHNYTHTGERPFKCPVCPKGFKKRNDLTYHMDGHELRGEVEGKIGEGVGWSLGGHDGCADDGDDDWAEDSDGGFDNVGLVNDSEIEIEIEEEKAIEIEIKPEKESKPGARAVIDANAVKVKTEVCAEDGPDDDGDHTYEDYNNEFQDEIEEYKDGKSYEVKIKEETKKGVKSKSNTHTKERVKRSSHKSDVPTYTCDFCSKQLTSKSHLRDHYLDQHVPDDFSCTLCNLPFGGRNGLIQHLMLRHERKTFFCRYCVETFTSSNALHEHENSHTNDEYICDYCRKVFKWKLTLQRHVKYHMGNFKEFACETCGRAFRVQANLRRHVAAVHHKVRPFPCDVCERSFVLKKDLVSHRRFHTGERPFKCDVCTKGFVSECLMKKHRLKHKDVRSKEGVQCDICGKYYPSYAMKQHKDSHTKPYKCELCGIGYGQKANLMRHKQSVHMDVQNDTFTCDVCGEGFNQRAALIRHKSNKHTAGVAHRKIKPKASVTKERAQSVSRKRKTPKYTCDFCDEQLASKNILQEHFSNEHVPDDFSCTLCRLPFAGRTDLIKHLLSKHEKKSYYCQFCVETFKSINALNNHENSHTKSGYACDYCQKVFKWKTTLRRHINWHMGNFKEFACETCGHSFKLAINLRRHVEAVHEKLRPFHCDLCDKAYSTKRLLDTHKRRHTGEKPFACDVCSKPFVNKSNMLAHRQRLHGEKERVCDVCGKQFASSSGLVQHMHTHTKPFSCHLCGEGFSDNAALMRHETNKHTHGHEQTTSNIKRNLTCDICNKTYLNWELHQRMHDKKPFKCHLCDKFYAEQITLDRHMNLVHYKVRKHSCDICNKLFTRPECVRLHKERKHNSDRQKMKKERKNKSKATKLNKNKNEDRPTVKVEATEFDGNFDSVVPAYEIPKVGFTDDASSVPAAGNSVLVSFEKYENAARLRALAPIQTMVEEEAACGCQRPRAAAGGGASRLRRYLLAAAGRSQPLPAAAVAV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -