Basic Information

Insect: Coleophora flavipennella
Gene Symbol: -
Assembly: GCA_947284805.1
Location: OX369257.1:3210143-3211462[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 5.4e-07 5.1e-05 24.9 0.4 1 23 10 33 10 33 0.97

2 15 1.7e-05 0.0016 20.1 0.6 1 23 39 61 39 61 0.98

3 15 5.9e-07 5.6e-05 24.7 1.6 1 23 67 90 67 90 0.98

4 15 8.4e-07 7.9e-05 24.3 0.2 1 23 96 119 96 119 0.97

5 15 7.8e-08 7.4e-06 27.5 0.3 1 23 125 147 125 147 0.98

6 15 6.5e-08 6.2e-06 27.7 0.8 1 23 153 175 153 175 0.98

7 15 2e-07 1.9e-05 26.2 3.4 1 23 181 203 181 203 0.99

8 15 1.1e-06 0.0001 23.9 0.4 1 23 209 231 209 231 0.98

9 15 8.5e-07 8e-05 24.2 4.3 1 23 237 259 237 259 0.99

10 15 3.6e-06 0.00034 22.3 2.0 1 23 265 287 265 287 0.96

11 15 3.7e-09 3.5e-07 31.7 0.6 1 23 293 315 293 315 0.98

12 15 1.4e-06 0.00013 23.5 1.8 1 23 321 343 321 343 0.98

13 15 9.2e-08 8.7e-06 27.3 0.3 1 23 349 371 349 371 0.96

14 15 4.4 4.1e+02 3.1 4.2 1 15 377 391 377 400 0.83

15 15 5.1 4.8e+02 2.9 0.2 1 16 407 422 407 424 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	5.4e-07	5.1e-05	24.9	0.4	1	23	10	33	10	33	0.97
2	15	1.7e-05	0.0016	20.1	0.6	1	23	39	61	39	61	0.98
3	15	5.9e-07	5.6e-05	24.7	1.6	1	23	67	90	67	90	0.98
4	15	8.4e-07	7.9e-05	24.3	0.2	1	23	96	119	96	119	0.97
5	15	7.8e-08	7.4e-06	27.5	0.3	1	23	125	147	125	147	0.98
6	15	6.5e-08	6.2e-06	27.7	0.8	1	23	153	175	153	175	0.98
7	15	2e-07	1.9e-05	26.2	3.4	1	23	181	203	181	203	0.99
8	15	1.1e-06	0.0001	23.9	0.4	1	23	209	231	209	231	0.98
9	15	8.5e-07	8e-05	24.2	4.3	1	23	237	259	237	259	0.99
10	15	3.6e-06	0.00034	22.3	2.0	1	23	265	287	265	287	0.96
11	15	3.7e-09	3.5e-07	31.7	0.6	1	23	293	315	293	315	0.98
12	15	1.4e-06	0.00013	23.5	1.8	1	23	321	343	321	343	0.98
13	15	9.2e-08	8.7e-06	27.3	0.3	1	23	349	371	349	371	0.96
14	15	4.4	4.1e+02	3.1	4.2	1	15	377	391	377	400	0.83
15	15	5.1	4.8e+02	2.9	0.2	1	16	407	422	407	424	0.87

Sequence Information

Coding Sequence: ATGAGGAGTCACACAGGAGAGAAACCATATTCATGTTCAGAATGTGACAAAGTGTTCAGTAAAAAAAGTGATGTAGCAAGACATATTATGAGGATTCACACAGGAGATAAACCATATTCATGTTTAGAGTGTGGCAAAGTGTTCAGTTGTAAAGGTGATTTGGCAATCCACATGAGGCTTCACACAGGAGAGAAACCATATTCTTGTTCAAAATGTAACAAATTATTCAGTCAAAAAGGAAATTTAGTAACACACATGAGGAGGATTCACACAGGAGAGAAACAATATCCTTGTTCAGAATGTGACAAAGTGTTCAGTCAAAAAGGTGATGTAGCAAGACATATTATGAGGTTTCACTCAGGAGATAAACCATATTCATGTTCAGAATGTGGCAAAGTGTTCAGTTTTAAAGGTGAATTGGCAAACCACATGAAGATTCATATGGGAGAAAAACCTTATTCATGTTCAGAATGTGACAAAATGTTCAGTAAAAGAGGTAATTTGGTAACCCACATGAGGATTCACACAGAAGAGACACTATATTCTTGTTCAGAATGTAACAAAGTATTCAGTCACAAAGGAAATTTCGTAAATCACATGAAGACTCACACAAGAGAGAAACCATATTCATGTTCGGCATGTGACAAAGTGTTTAGTGTAAAAAGTACTTTGGTAACACACATGAGGATTCACACAGGAGAAAAACCATATTCATGTTCAGAATGTAACAAATCATTCTGTGTTAAAAGTAATTTCGTAAATCACATGAGGAGTCACACAGGAGAGAAACCATATTTGTGTTCAGAGTGTGGCAAAGGGTTCAGTTGTAAAAGTAATTTAGTAAAACACATGAGGATTCACACAGGAGAGAAACCATATTCTTGTTCAGAATGTGACAAAGTATTCAGTCAAAAAGGAAATTTGGTAAAACACATGAGGATTCACACAGGAAAGAAACCATATTCATGTTCAGAATGTGACAAAGTGTTCAGGGCAAAAGGTCATTTGGTAAACCACATGAGGTTTCACACTGGAGAGAAAGCATATTTATGTTCAGATTGTGATAAAGTGTTTAGTGTAAAAGATAATTTAGTAACACACATGAGGATTCACACAGGAGAGAAACCATATTCGTGTTCAGAATGTAATATGTTATTCAGTGACAGTAGTGACAGTAGTGTTAGACATCAGAGAAAACATGAAAGGGAGAAAAACTGTTATTTATGTTTAAAATGTGACATACAATATTACCGAAAATTTTACTTGGCTGCTCAAAAGAAGACCCATGCATTCAGTAAACTTGCGTGGTTATGGCTCTGA
Protein Sequence: MRSHTGEKPYSCSECDKVFSKKSDVARHIMRIHTGDKPYSCLECGKVFSCKGDLAIHMRLHTGEKPYSCSKCNKLFSQKGNLVTHMRRIHTGEKQYPCSECDKVFSQKGDVARHIMRFHSGDKPYSCSECGKVFSFKGELANHMKIHMGEKPYSCSECDKMFSKRGNLVTHMRIHTEETLYSCSECNKVFSHKGNFVNHMKTHTREKPYSCSACDKVFSVKSTLVTHMRIHTGEKPYSCSECNKSFCVKSNFVNHMRSHTGEKPYLCSECGKGFSCKSNLVKHMRIHTGEKPYSCSECDKVFSQKGNLVKHMRIHTGKKPYSCSECDKVFRAKGHLVNHMRFHTGEKAYLCSDCDKVFSVKDNLVTHMRIHTGEKPYSCSECNMLFSDSSDSSVRHQRKHEREKNCYLCLKCDIQYYRKFYLAAQKKTHAFSKLAWLWL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -