Cfla026051.1
Basic Information
- Insect
- Coleophora flavipennella
- Gene Symbol
- -
- Assembly
- GCA_947284805.1
- Location
- OX369267.1:7956003-7957706[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 8.1e-07 7.6e-05 24.3 0.8 1 23 10 32 10 32 0.98 2 19 6.1e-07 5.7e-05 24.7 2.8 1 23 38 60 38 60 0.98 3 19 1.8 1.7e+02 4.3 0.1 12 23 66 77 65 77 0.89 4 19 4.5e-06 0.00043 22.0 6.1 1 23 83 105 83 105 0.98 5 19 1.2e-05 0.0011 20.6 0.7 1 21 111 131 111 132 0.96 6 19 0.00014 0.013 17.3 6.8 1 23 137 159 137 159 0.98 7 19 1.3e-06 0.00013 23.6 0.5 1 23 165 187 165 187 0.98 8 19 3.3e-07 3.1e-05 25.5 0.4 1 23 193 216 193 216 0.98 9 19 0.56 53 5.9 0.2 1 16 222 237 222 238 0.91 10 19 0.056 5.3 9.1 0.0 1 16 255 270 255 272 0.90 11 19 1.3e-06 0.00012 23.6 6.3 1 23 283 305 283 305 0.98 12 19 8.5e-08 8e-06 27.4 1.3 1 23 311 333 311 333 0.98 13 19 1.3e-06 0.00012 23.7 2.5 1 23 339 361 339 361 0.98 14 19 7.1e-05 0.0067 18.2 0.1 5 23 371 389 370 389 0.96 15 19 6.7e-07 6.3e-05 24.6 6.0 1 23 395 417 395 417 0.98 16 19 2.2e-07 2.1e-05 26.1 0.8 1 23 423 445 423 445 0.98 17 19 1.1e-06 0.00011 23.8 0.9 1 23 451 473 451 473 0.98 18 19 1.2e-07 1.1e-05 26.9 1.4 1 23 479 501 479 501 0.98 19 19 0.0061 0.57 12.1 0.7 1 23 533 555 533 555 0.99
Sequence Information
- Coding Sequence
- ATGAGGATTCACACAGGAGATAAACCATATTCATGTTCGCAATGTGACAAACTGTTCAGTAGAAAAGGTGATTTGGTAAGACACCTGAGGATTCACACAGGAGATAAACCATATTCATGTTCGCAATGTGATAAACTGTTCAATAGAAAAAGTAATTTGGTAAGACACATGAGGTTTCACAAAGGAGAGAAACGAAAAAAAGGTGATTTGGTAAGACACATAAGGATTCACACAGAGGAGAAATCATATTCATGTTCGCATTGTAACAAACACTTCAATGATAAAAGTTATTTGGTGAAACACTTGAGGATTCACACAGGAGATAAACCATATTCATGTTCGCAATGTGACAAACTGTTCAGTCAAAAAGGTTATTTGGAAAAACACATGAAGGAAGAGGAGAAACCATATTCATGTTCGCATTGTAACAAACACTTGAATGATAAAAGTCATTTGGTGAAACACATGAGTATTCACACAGGAGATTTACCATATCCATGTTCGCAATGTGACAAATTGTTCAGTAGAAAAGGTGATATGGTAAGACACATGAGGATTCACACAGGAGAGAAACCATATTCATGTTCAGAATGTGGAAAAGGATTTAATCAAAGCAGTAACATGGTAACACACATGAAGATGGTCCACAGAAGAGAGAAATCATATTCATGTTTACAATGTGACAAACTTTTCAGTGGAAAAGGTGATTTAGTATGTGACAAAGTGGTAAATTACACCAGGATTCATACACGACAGAAACCATATTTGTGTTCAGAGTGTGACATAGCATTTAGTCAAAAAGGTTATTTGGCAGAACAAATGAAGATTCACACAGAGGAGAAACTATATTCATGTTCGCATTGTAACAAACACTTCAATGATAAAAGTTATTTGGTGAAACACATGAGGATTCACACAGGAGATAAACCATATTCATGTTCGCAATGTGACAAACTGTTCAGTAGAAAAAGTGATTTGGTTAGACACATGAGGATTCACACAGGAGATAAACCATATTCATGTTCGCGATGTGACAAACTGTTCAGTAGAAAAAGTGATTTGGTAAGACACATGAGGTTTCACACAGGAGAGAAACCATATTCAGGTTCAGAATGTGACAAAATATTCAGTAGTAAAGGTGATTTGGTAAGACACATGATAAGTCACACAGAGGAGAAACCATATTCATGTCCGCATTGTAACAAACACTTCAATGATAAAAGTTATTTGGTGAAACACATGAGGAATCACACAGGAGATAAACCATATTCATGTTCGCAATGTGACAAACTGTTCAGTAGAAAAGGTGATTTGGTAAGACACATGAGGATTCACACAGGAGATAAACCATATTCATGTTCGCAATGTGACAAACTGTTCAATAGAAAAGGTGATTTGGTAAGACACATGAAGATTCACACAGGAGATAAACCATATTCATGTTCGCAATGTGACAAGCTGTTCAGTAGAAAAAGTGATTTGGTAAAACACATGAGGATTCACACAGGAGAGAAACCGTGTTCATGTTCAGAATGTAACAAGTTATTTAATGAAAAATGTGATAGACATGAGAAGAAACATGAAAAAGGGAATTTTTATCAATGTTTAGAATGTAACAAACTACTACGTAACATATTGAACTTTGTAGAACACATGAAGACACATGCAGGCAATAAACTTGCATGGATATGGCTCGGAAAATAA
- Protein Sequence
- MRIHTGDKPYSCSQCDKLFSRKGDLVRHLRIHTGDKPYSCSQCDKLFNRKSNLVRHMRFHKGEKRKKGDLVRHIRIHTEEKSYSCSHCNKHFNDKSYLVKHLRIHTGDKPYSCSQCDKLFSQKGYLEKHMKEEEKPYSCSHCNKHLNDKSHLVKHMSIHTGDLPYPCSQCDKLFSRKGDMVRHMRIHTGEKPYSCSECGKGFNQSSNMVTHMKMVHRREKSYSCLQCDKLFSGKGDLVCDKVVNYTRIHTRQKPYLCSECDIAFSQKGYLAEQMKIHTEEKLYSCSHCNKHFNDKSYLVKHMRIHTGDKPYSCSQCDKLFSRKSDLVRHMRIHTGDKPYSCSRCDKLFSRKSDLVRHMRFHTGEKPYSGSECDKIFSSKGDLVRHMISHTEEKPYSCPHCNKHFNDKSYLVKHMRNHTGDKPYSCSQCDKLFSRKGDLVRHMRIHTGDKPYSCSQCDKLFNRKGDLVRHMKIHTGDKPYSCSQCDKLFSRKSDLVKHMRIHTGEKPCSCSECNKLFNEKCDRHEKKHEKGNFYQCLECNKLLRNILNFVEHMKTHAGNKLAWIWLGK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -