Cfla042300.1
Basic Information
- Insect
- Coleophora flavipennella
- Gene Symbol
- -
- Assembly
- GCA_947284805.1
- Location
- OX369290.1:13527809-13529323[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 7e-08 6.6e-06 27.7 2.0 1 23 4 26 4 26 0.98 2 17 9.8e-07 9.2e-05 24.1 1.6 1 23 32 54 32 54 0.98 3 17 9.7e-06 0.00092 20.9 2.7 1 23 60 82 60 82 0.99 4 17 4.6e-08 4.4e-06 28.2 0.8 1 23 88 110 88 110 0.98 5 17 1.1e-07 1.1e-05 27.0 2.1 1 23 116 138 116 138 0.98 6 17 8.1e-07 7.6e-05 24.3 2.6 1 23 144 166 144 166 0.98 7 17 2e-05 0.0019 19.9 0.5 1 23 172 194 172 194 0.98 8 17 9.3e-05 0.0087 17.8 1.9 1 23 200 222 200 222 0.98 9 17 9.2e-07 8.7e-05 24.1 2.0 1 23 228 250 228 250 0.98 10 17 5.1e-06 0.00049 21.8 1.7 1 23 256 278 256 278 0.98 11 17 2.5e-08 2.3e-06 29.1 0.5 1 23 284 306 284 306 0.98 12 17 1.2e-07 1.1e-05 27.0 2.3 1 23 315 337 315 337 0.98 13 17 0.002 0.19 13.6 7.3 1 23 343 365 343 365 0.98 14 17 5.9e-07 5.5e-05 24.8 1.0 1 23 371 393 371 393 0.98 15 17 1.5e-07 1.4e-05 26.6 1.0 1 23 399 421 399 421 0.98 16 17 1.5e-06 0.00014 23.5 0.2 1 23 427 449 427 449 0.96 17 17 0.00026 0.024 16.4 1.2 1 23 470 492 470 492 0.97
Sequence Information
- Coding Sequence
- ATGACAGTTTATTCATGTTCAGAATGTTCCAAAACATTCAATAATAAAACTAATTTGGTAAAACACATGAGGATTCACACAGGAGAAAAACCATATTCATGTTCAGAATGTGACAAAACATTCAATCAAAGATGTGCTTTGGTAATACATATGAGGATTCACACAGGAGAGAAACCATATTCATGTTCACATTGTGGCAAACTCTTTAGTGCCCGAAGTAATTTCATTACACATGTGAGGACTCACACAGGAGAGAAACCATATTCATGTTCAGAATGTGACAAAGCATTCAAGCAAAGAACTGATTTGGTAAAACACATGAGGATTCACACAGGAGAGAAACCATTTTCATGTTCAGAATGTGACAAATCATTCAAACGAAAAAGTCGCTTGGTAACACACATGAGGATTCACACAGGAGAGAAACCATATTCTTGTTTAGAATGTGACAAAACATTCAATCAAAAAAATCATTTGGCAACACACATGAAGATTCATACAGGAGAGAAATCATATTCATGTTTACTTTGTGACAAACTCTTTCCTGACAGAGGAAACATGTTAAAACACATGAGAAGTCACACAGGAGAGAAACCATATTCATGTTTACATTGTGACAAACTCTTCAGTGCAAAAAGTAGTATGGTAACACACATGAGGATTCACACAGGAGAGAAACCATTTTCATGTTCAGAATGTGACAAATCATTCAAACAAAGTGGTACTTTGTTTAACCACAAGAGAATTCACACAGGGGAGAAACCGTTTTCATGTTCAGAATGTTACAAATCATTCATACATAAAGGTGATTTGGTAAAACACGTGAGGATTCATACAGGAGAGAAACCATATTCATGTTCAGAATGTGACAAAGCATTCAAGCAAAACAGTGGATTGGTAAAACACATGAGGATTCACACAGGAGAGAAAGTAGAGAAACCATATTCTTGTTTAGAATGTGACAAAACATTCAAGCAAAAAGGTCATTTGGTTCAACACATGAGGATTCATACAGGAGAGAAACCATATTCGTGTTTACATTGTGACAAACACTTCAGTATGCAATGTAGTATGGTAACACACATGAGGATTCACACAGGAGAGAAACCATTTTCATGTTCAGATTGTGATAAATCATTCAATCAAAGAGGTGCTTTGTTAAAACACAAGAGGATTCACACAAGAGAGAAACCGTTTTCATGTTCAGAATGTGACAAATCATTCAAGCAAAAAAGTGTTTTGGTAAAACACATAAGGATTCATAAAAAAGAGGAACTATATTTATGTGCAGAATGTGACGAGGCATTCAAACAAAAAAGGGATTTGGTAAAACACATGAGGATTCACACAGGAGGGCAGCCAGATTCACATTCAGAGTGTAAAAAGCTACTAAGTGACAGAAGTGTTTATATATGTTTAGAATGTGATGAACAATTCCATCAAAAATTTAACTTCGCAGCACACATGAAGGCACATGCAGGCAATAAACTTGCATGGGTATGGCTTGGAATATAG
- Protein Sequence
- MTVYSCSECSKTFNNKTNLVKHMRIHTGEKPYSCSECDKTFNQRCALVIHMRIHTGEKPYSCSHCGKLFSARSNFITHVRTHTGEKPYSCSECDKAFKQRTDLVKHMRIHTGEKPFSCSECDKSFKRKSRLVTHMRIHTGEKPYSCLECDKTFNQKNHLATHMKIHTGEKSYSCLLCDKLFPDRGNMLKHMRSHTGEKPYSCLHCDKLFSAKSSMVTHMRIHTGEKPFSCSECDKSFKQSGTLFNHKRIHTGEKPFSCSECYKSFIHKGDLVKHVRIHTGEKPYSCSECDKAFKQNSGLVKHMRIHTGEKVEKPYSCLECDKTFKQKGHLVQHMRIHTGEKPYSCLHCDKHFSMQCSMVTHMRIHTGEKPFSCSDCDKSFNQRGALLKHKRIHTREKPFSCSECDKSFKQKSVLVKHIRIHKKEELYLCAECDEAFKQKRDLVKHMRIHTGGQPDSHSECKKLLSDRSVYICLECDEQFHQKFNFAAHMKAHAGNKLAWVWLGI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -