Basic Information

Insect: Coleophora flavipennella
Gene Symbol: -
Assembly: GCA_947284805.1
Location: OX369278.1:4309351-4310790[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 1.1e-07 1.1e-05 27.0 1.6 1 23 25 47 25 47 0.98

2 16 9.3e-07 8.8e-05 24.1 0.7 1 23 53 75 53 75 0.96

3 16 3e-06 0.00028 22.5 0.2 1 23 81 103 81 103 0.96

4 16 2.1e-06 0.0002 23.0 1.5 1 23 109 131 109 131 0.98

5 16 3.3e-07 3.1e-05 25.5 0.6 1 23 137 159 137 159 0.98

6 16 1.1e-07 1.1e-05 27.0 0.4 1 23 165 187 165 187 0.98

7 16 1.3e-05 0.0012 20.5 0.2 1 23 193 215 193 215 0.98

8 16 1.5e-06 0.00014 23.5 0.4 1 23 221 243 221 243 0.98

9 16 5.3e-06 0.0005 21.8 0.4 1 23 249 271 249 271 0.98

10 16 4.2e-07 4e-05 25.2 0.3 1 23 277 299 277 299 0.98

11 16 1.3e-07 1.3e-05 26.8 0.4 1 23 305 327 305 327 0.98

12 16 9e-08 8.5e-06 27.3 1.1 1 23 333 355 333 355 0.98

13 16 1.4e-06 0.00013 23.6 0.4 1 23 361 383 361 383 0.98

14 16 7.2e-08 6.8e-06 27.6 1.0 1 23 389 411 389 411 0.98

15 16 1.6e-05 0.0015 20.3 2.1 1 23 417 439 417 439 0.99

16 16 1.8e-05 0.0017 20.1 2.4 1 23 445 467 445 467 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	1.1e-07	1.1e-05	27.0	1.6	1	23	25	47	25	47	0.98
2	16	9.3e-07	8.8e-05	24.1	0.7	1	23	53	75	53	75	0.96
3	16	3e-06	0.00028	22.5	0.2	1	23	81	103	81	103	0.96
4	16	2.1e-06	0.0002	23.0	1.5	1	23	109	131	109	131	0.98
5	16	3.3e-07	3.1e-05	25.5	0.6	1	23	137	159	137	159	0.98
6	16	1.1e-07	1.1e-05	27.0	0.4	1	23	165	187	165	187	0.98
7	16	1.3e-05	0.0012	20.5	0.2	1	23	193	215	193	215	0.98
8	16	1.5e-06	0.00014	23.5	0.4	1	23	221	243	221	243	0.98
9	16	5.3e-06	0.0005	21.8	0.4	1	23	249	271	249	271	0.98
10	16	4.2e-07	4e-05	25.2	0.3	1	23	277	299	277	299	0.98
11	16	1.3e-07	1.3e-05	26.8	0.4	1	23	305	327	305	327	0.98
12	16	9e-08	8.5e-06	27.3	1.1	1	23	333	355	333	355	0.98
13	16	1.4e-06	0.00013	23.6	0.4	1	23	361	383	361	383	0.98
14	16	7.2e-08	6.8e-06	27.6	1.0	1	23	389	411	389	411	0.98
15	16	1.6e-05	0.0015	20.3	2.1	1	23	417	439	417	439	0.99
16	16	1.8e-05	0.0017	20.1	2.4	1	23	445	467	445	467	0.96

Sequence Information

Coding Sequence: ATGTATCACACAGCGTTAAGCGAAATTGGTGACTTGGTAAAATACAAGAGGATTCACGCCGGAGAAAAATTATATTCATGTTCAGTATGTGACAAAGCATTCAGTAAAAAGAGTCATTTGGTAAACCACATGATGATTCACACTGGAGAGAAACCATATTTATGTTCAGAATGTGACAAAGCATTTAGTCGAAAAGATTATTTAGTAACACACACGAGGATTCACACAGGAGAGAAACCATATTTATGTTCAGAATGTGACAAAGCGTTCAGAATAAAAGATGGTTTGGTAAAACACATGAGGATTCACACAGGAGAAAAACCATATTCATGTTCAGAATGTGACAAAGCATTCAGTGAAAAGCGTCATTTGGTAAACCATATGACGATTCATACTGGAGAGAAACCATATTCATGTTCAGAATGTGACAAAACATTCAGAGAACAACGTAGTTTGGTAATACACATGAGGATTCACACAGGCGAGAAACCATATTCATGTTCAGAATGTGACAAAGCATTCAGTGACAAGAGGACATTGGTAATACACATGAGGATTCACACAGAGAAGAAACCATTTTCATGTTCAGAATGTGACCAAGCATTCAGAATAAAAGATGTTTTGATAAAACACATGAGGATTCACACAGGAGAAAAACCATTTTCATGTTCAGAATGTGACAAAGCATTCAGAGTAAAACGTGGTTTGGTAAGTCACATGAGGATTCACACAGGAGAGAAACCATATTCATGTTCAGAATGTGACAAAGCATTCAGTGAAAAGAGGACTTTGGTAATACACACTAGGATTCACACAGGAGAGGAACCATATTCATGTTCAGAATGTGACAAAGCATTCACTGAAAAGGGGACTTTGGTAACACACATGAGGATTCACACAGGAGAGAAACCATATTCATGTTCAGAATGTGACAAAGCATTCAGAGTAAAAGGTAGTTTGGTAAAACACATGAGGATTCACACAGGAGAGAAACCATATTCATGTTCAGAATGTAACAAAGTGTTTAGTTTAAAAAGTTATTTGGTAAGACACATGAGAATTCACACAGGAGAGAAACCATATTCATGTTCAGAATGTGACAAAGCATTCAGTGAAAAGTTCAGTTTGGTAAACCATATGATGATTCATACTGGGCATAAACCATATTTTTGTTCGGAATGTGATAAAGCATTCAGTCGAAAAGATTATTTAGTAACGCACATGAGGATTCACACAGGAGAGAAACCATATTCATGTTCAGAATGTAATATGCTATTCAGTGACAGAAGTAGTTTTGTGAGACATCAGAGGAAACATAAAAGGAAGAATCCTTATCTATGTTTGGAATGTGACAAAAAATTCCACCAAAAATCTTACTTGGCAGCACACTTGAAGACGCATGCAAGCAATGAAATTGCTTGGATTTGGCTTGGATTTTAA
Protein Sequence: MYHTALSEIGDLVKYKRIHAGEKLYSCSVCDKAFSKKSHLVNHMMIHTGEKPYLCSECDKAFSRKDYLVTHTRIHTGEKPYLCSECDKAFRIKDGLVKHMRIHTGEKPYSCSECDKAFSEKRHLVNHMTIHTGEKPYSCSECDKTFREQRSLVIHMRIHTGEKPYSCSECDKAFSDKRTLVIHMRIHTEKKPFSCSECDQAFRIKDVLIKHMRIHTGEKPFSCSECDKAFRVKRGLVSHMRIHTGEKPYSCSECDKAFSEKRTLVIHTRIHTGEEPYSCSECDKAFTEKGTLVTHMRIHTGEKPYSCSECDKAFRVKGSLVKHMRIHTGEKPYSCSECNKVFSLKSYLVRHMRIHTGEKPYSCSECDKAFSEKFSLVNHMMIHTGHKPYFCSECDKAFSRKDYLVTHMRIHTGEKPYSCSECNMLFSDRSSFVRHQRKHKRKNPYLCLECDKKFHQKSYLAAHLKTHASNEIAWIWLGF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -