Basic Information

Insect: Coleophora flavipennella
Gene Symbol: -
Assembly: GCA_947284805.1
Location: OX369278.1:3523190-3524674[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 2.7e-07 2.5e-05 25.8 1.4 1 23 10 32 10 32 0.98

2 17 3.5e-08 3.3e-06 28.6 0.3 1 23 38 60 38 60 0.98

3 17 0.00012 0.012 17.4 0.1 1 23 66 88 66 88 0.98

4 17 1.4e-08 1.3e-06 29.8 0.2 1 23 94 116 94 116 0.98

5 17 1.5e-05 0.0014 20.3 0.2 1 23 122 144 122 144 0.98

6 17 5.4e-07 5.1e-05 24.9 1.4 1 23 150 172 150 172 0.98

7 17 1.1e-08 1.1e-06 30.1 1.0 1 23 178 200 178 200 0.99

8 17 3.6e-07 3.4e-05 25.4 1.1 1 23 206 228 206 228 0.98

9 17 3.3e-08 3.1e-06 28.7 2.3 1 23 234 257 234 257 0.98

10 17 1.5e-07 1.4e-05 26.6 0.2 1 23 263 285 263 285 0.98

11 17 4e-05 0.0037 19.0 0.1 1 23 291 313 291 313 0.98

12 17 1.1e-08 1e-06 30.2 1.0 1 23 319 341 319 341 0.98

13 17 1.1e-08 1e-06 30.2 1.0 1 23 347 369 347 369 0.98

14 17 2e-07 1.9e-05 26.2 0.4 1 23 375 397 375 397 0.98

15 17 4e-07 3.8e-05 25.3 0.9 1 23 403 425 403 425 0.98

16 17 4e-05 0.0038 19.0 1.2 1 23 431 453 431 453 0.96

17 17 0.00013 0.012 17.3 4.3 1 23 459 482 459 482 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	2.7e-07	2.5e-05	25.8	1.4	1	23	10	32	10	32	0.98
2	17	3.5e-08	3.3e-06	28.6	0.3	1	23	38	60	38	60	0.98
3	17	0.00012	0.012	17.4	0.1	1	23	66	88	66	88	0.98
4	17	1.4e-08	1.3e-06	29.8	0.2	1	23	94	116	94	116	0.98
5	17	1.5e-05	0.0014	20.3	0.2	1	23	122	144	122	144	0.98
6	17	5.4e-07	5.1e-05	24.9	1.4	1	23	150	172	150	172	0.98
7	17	1.1e-08	1.1e-06	30.1	1.0	1	23	178	200	178	200	0.99
8	17	3.6e-07	3.4e-05	25.4	1.1	1	23	206	228	206	228	0.98
9	17	3.3e-08	3.1e-06	28.7	2.3	1	23	234	257	234	257	0.98
10	17	1.5e-07	1.4e-05	26.6	0.2	1	23	263	285	263	285	0.98
11	17	4e-05	0.0037	19.0	0.1	1	23	291	313	291	313	0.98
12	17	1.1e-08	1e-06	30.2	1.0	1	23	319	341	319	341	0.98
13	17	1.1e-08	1e-06	30.2	1.0	1	23	347	369	347	369	0.98
14	17	2e-07	1.9e-05	26.2	0.4	1	23	375	397	375	397	0.98
15	17	4e-07	3.8e-05	25.3	0.9	1	23	403	425	403	425	0.98
16	17	4e-05	0.0038	19.0	1.2	1	23	431	453	431	453	0.96
17	17	0.00013	0.012	17.3	4.3	1	23	459	482	459	482	0.98

Sequence Information

Coding Sequence: ATGAGGATTCACACAGGAGAGAAACCATATTCATGTTCAGATTGTGACAAATTGTTCAGCCAAAAAAGAAGCTTGGTAAAACACATGAGGATTCACACTGGAGAGAAACCATATTCATGTTCAGAATGTGACAAAGTGTTCATTCGAAAAAGTGAATTAGCCACACACATAAGGATTCACACTGGAGAGAAACCATATTCATGTTTAGAATGTGATAAAGCATTTAATGAAAAAGGTCCTTTGGTATATCACATGAAGATTCACACTGGAGAGAAACCATATTCATGTTCAGAATGTGACAAAGTGTTCATTCAAAAAAGTGATTTAGCAAGACACATTAGAATTCACACTGGAGAGAAATCATATTCATGTTCAGAATGTGATAAAGCATTTAGTGAAAAAGGTCCTTTGGTATATCACATGAAGATTCACACTGGAGAGAAACCATATTCATGTTCAGAATGTGACAAAGCTTTCCGCCAAACAGGTCATTTGGCATATCATATGAGGATTCACACTGGAGAAAAACCATATACATGTTCAGAATGTGGCAAAGCATTCTGTCAAAAAAGTGATTTAGCAATACACATGAGGATTCACACAGGAGAGAAACCATATTCATGTTCACAATGTGACAAAGCTTTCCGCCAAACAGGTCATTTGGCAGTTCATATGAGGATTCACACTGGAGAAAAACCATATACATGTTCAGAATGTGGCAAAGCATTCTGTCAAAAAAGGGATTTAGCTAGACATATGAGGAGGATACACTCCGGATTTAAACATTATTCATGTTCAGAATGTGACGAAGCATTCATTCAAAATAGTTATTTAGCAAAACACATGAGGATTCACACTGGAGAGAAACCATATTCATGTTCAGAATGTGATAAAGCATTTAGTGCAAAAGGTCCTTTGGTATATCACATGAAGATTCACACTGGAGAGAAACCATATTCATGTTCACAATGTGACAAAGCTTTCCGTCAAAAAAGTGATTTAGTGAGACATATGAGGATTCACACTGGAGATAAATGTTATTCATGTTCACAATGTGACAAAGCTTTCCGTCAAAAAAGTGATTTAGTGAGACATATGAGGATTCACACTGGAGATAAATGTTATTCATGTTCAGAATGTGACAAAGCATTCATTCTAAAAAGTACTTTAGCAAGACACATGAGGATTCACACAGGAGAGAAACCATATTCGTGTTCAGAATGTGACAAAGTGTTCAGTTTAAAAAGTAGTTTGGTAAAACACACAAGGATTCACACAGGAGAGAACCCATATTTGTGTTCAGAATGTAATATGCTATTCAGTGACAAAAGTGCTTTTGTTAGACATCAGAGGAAGCACGAAAGGGGGAATCCTTATCCATGTTTACAATGTGACAAACAATTCCATCAAAAATCTTACTTGGCTGCACACTTAAAGACATGTCATGCAGGCAATAAACTAGCTTGGATATGGCTTGGAATTTAA
Protein Sequence: MRIHTGEKPYSCSDCDKLFSQKRSLVKHMRIHTGEKPYSCSECDKVFIRKSELATHIRIHTGEKPYSCLECDKAFNEKGPLVYHMKIHTGEKPYSCSECDKVFIQKSDLARHIRIHTGEKSYSCSECDKAFSEKGPLVYHMKIHTGEKPYSCSECDKAFRQTGHLAYHMRIHTGEKPYTCSECGKAFCQKSDLAIHMRIHTGEKPYSCSQCDKAFRQTGHLAVHMRIHTGEKPYTCSECGKAFCQKRDLARHMRRIHSGFKHYSCSECDEAFIQNSYLAKHMRIHTGEKPYSCSECDKAFSAKGPLVYHMKIHTGEKPYSCSQCDKAFRQKSDLVRHMRIHTGDKCYSCSQCDKAFRQKSDLVRHMRIHTGDKCYSCSECDKAFILKSTLARHMRIHTGEKPYSCSECDKVFSLKSSLVKHTRIHTGENPYLCSECNMLFSDKSAFVRHQRKHERGNPYPCLQCDKQFHQKSYLAAHLKTCHAGNKLAWIWLGI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -