Cfla017304.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Coleophora flavipennella
Gene Symbol
-
Assembly
GCA_947284805.1
Location
OX369253.1:5680691-5683000[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 26 1.5e-06 0.00014 23.5 2.4 1 23 10 32 10 32 0.98
2 26 4.4e-06 0.00042 22.0 0.5 1 23 38 60 38 60 0.96
3 26 5.5e-08 5.2e-06 28.0 0.8 1 23 66 88 66 88 0.98
4 26 3.5e-08 3.3e-06 28.6 2.0 1 23 94 116 94 116 0.98
5 26 0.00018 0.017 16.9 0.9 5 23 126 144 125 144 0.96
6 26 1e-05 0.00099 20.8 0.5 1 23 150 172 150 172 0.96
7 26 2.5e-07 2.4e-05 25.9 1.9 1 23 178 200 178 200 0.98
8 26 2.4e-07 2.3e-05 26.0 1.6 1 23 206 228 206 228 0.98
9 26 1.4e-07 1.3e-05 26.7 0.4 1 23 234 256 234 256 0.98
10 26 2.4e-08 2.3e-06 29.1 2.1 1 23 262 284 262 284 0.99
11 26 1.7e-06 0.00016 23.3 0.4 1 23 290 312 290 312 0.98
12 26 2.5e-07 2.4e-05 25.9 1.9 1 23 318 340 318 340 0.98
13 26 1.2e-05 0.0011 20.7 0.4 1 23 346 368 346 368 0.98
14 26 2.5e-07 2.4e-05 25.9 1.9 1 23 374 396 374 396 0.98
15 26 2.4e-07 2.3e-05 26.0 1.6 1 23 402 424 402 424 0.98
16 26 5.7e-07 5.4e-05 24.8 0.4 1 23 430 452 430 452 0.98
17 26 1.1e-07 1e-05 27.0 3.2 1 23 458 480 458 480 0.98
18 26 9.6e-07 9e-05 24.1 0.4 1 23 486 508 486 508 0.98
19 26 1.7e-07 1.6e-05 26.4 2.3 1 23 514 536 514 536 0.98
20 26 1.3e-06 0.00012 23.7 0.5 1 23 542 564 542 564 0.98
21 26 4.7e-06 0.00044 21.9 0.3 1 23 570 592 570 592 0.98
22 26 0.00014 0.013 17.2 0.1 1 21 598 618 598 619 0.95
23 26 0.0068 0.64 12.0 0.1 7 23 632 648 627 648 0.97
24 26 0.0022 0.21 13.5 0.3 1 17 654 670 654 671 0.93
25 26 0.0018 0.17 13.8 0.1 1 21 682 702 682 703 0.95
26 26 0.0071 0.67 11.9 0.2 1 14 710 723 710 727 0.89

Sequence Information

Coding Sequence
ATGAGGATTCAAACAGGAGAGAAACCCTATCCATGTTCAAAATGTGACAAAACATTCAGAGAAAAAGGACATATGGTGAAACACATGAGGGTTCACACAGGAAAGAAACTATATTTATGTTCAGAATGTGACAAAGCATTCAGTTTCAGATCTGTTTTGGTAAAACACATGAGGATTCACACAGGAGGGAAACCCTATCCATGTTTAGAATGCGACAAAGCATTCACTCAAAAAGGACATTTGGTAAGGCACATGAGGATCCACACAGGAGAGAAACCATACTCATGTTCAGAATGTGACAAAGCATTCACTCAAAAAGAACATTTGGTAAAACACATGAGGATCCACACAAGAGAGAAACCCTATTCACGTTCAGAATGTGACAAAACATTCAGAGAAAAAGGACATATGGTGAAACACATGAGGGTTCACACAGGAAAGAAACTATATTTATGTTCAGAATGTGACAGAGCATTCAGTTTTAGATCTGTTTTGGTAAAACACATGAGGATCCACACAGGGGAGAAACCCTATTCATGTTCAGAATGTGACAAAACATTCAGAGAAAAAGGACATTTGGTAAATCACATGAGGATTCACACAGGAGAGAAACCATACTCATGTTCAGAATGTGACAAAGCATTCATTAAAAAAGAACATTTGGTAAAACACATGAGGATCCACACAGGAGAGAAACCATACTCATGTTCAGAATGTGACAAAGCATTCAGTTTGAAAGGAAATTTAGTAAAACATATGAGGATTCACACAGGAGAGAAACCATACACATGTTCAGAATGTGACAAAGCATTCACTCAAAAAGAACATTTGGTAAAACACATGAGGATTCACACAGGAGAGAAACCATACTCATGTTCAGAATGTGACAAAGCATTTAGTCAAAAATATGTTTTGGTCAAACACATGGAGATTCACACAGGAGAGAAACCCTATTCATGTTCAGAATGTGACAAAACATTCAGAGAAAAAGGACATTTGGTAAATCACATGAGAATTCACACAGGAGAGAAACCATATTCATGTTCACAATGTGACAAAGCATTAATTAAAAAAGAACAATTGGTAAAACACATGAGGATCCACACAGGAGAGAAACCCTATTCATGTTCAGAATGTGACAAAACATTCAGAGAAAAAGGACATTTGGTAAATCACATGAGGATTCACACAGGAGAGAAACCATACTCATGTTCAGAATGTGACAAAGCATTCATTAAAAAAGAACATTTGGTAAAACACATGAGGATCCACACAGGAGAGAAACCATACTCATGTTCAGAATGTGACAAAGCATTCAGTTTAAAAGGAACTTTAGTAAAACATATGAGGATTCACACAGGAGAGAAACCATACACATGTTCAGAATGTGACAAAGCATTCACTCAAAAAGATCATTTGGTAAAACACATGAGGTTTCACACAGGAGAGAAACCATACTCATGTTCAGAATGCGACAAAGCATTCACTATAAAGGAAACATTAGTAAAACATATGAGGATTCACACAGGAGAGAAACCCTATTCATGTTCAGAATGTGACAAAACATTCAGAGAAAAAGGACATTTGGTAAAACACATGAGGATTCACACAGGAGAGAAACCATATTCATGTTCAGAATGTGACAAAACATTCAGAGTAAAAGGACTTTTGGTAAAACACATGAGCATTCACACAGGAGAGGAACCCTATTCATGTTCAGAATGTGATCAAACATTTGGTCAAAAAGGAAAATTGGTAGAGCACATGAGGATTCACACAGAAGAGAAACCTTATTCATGTTTAGATTGTGACAAAGCTTTCAGTGAAAAAGTAAAATTGGAAGTGCACATGAGTATTCAGACAAGAGAGAAACCCTATCCATGTTTAGAATTTGACAAAACATTCAGTCATAAAGGACTTTTGGCAGAGCACATGAGGATTCACACAGGAGAGAAATCATATTCATGTTCAGTATGTGAGAAAGCATTCACTCAAAAAGAACATTTGGTAAAACCCATGAGTATTCACACAGGAGAGAAATCATATATGTGTTCAGAATGTGATAAATTATTCAGTGAAAAAGGAAAATTGGTTGATCACACGAGGATTTACACGGGAGAGAAACCCTATTCATGTTCGGAATGTGACAAAACATTCAGTGACAGAAGGGCTATTGTAAGACGTAATGAAGGCAAAATACTTTACTTTTGTTTAGAATTTGACAACCGATTTCATAATTTTGCCGCACATAATATGAAGACATATGCAGGCAGAAAACTTGCATGGATGTGGCTCGGATTGTATAAATAA
Protein Sequence
MRIQTGEKPYPCSKCDKTFREKGHMVKHMRVHTGKKLYLCSECDKAFSFRSVLVKHMRIHTGGKPYPCLECDKAFTQKGHLVRHMRIHTGEKPYSCSECDKAFTQKEHLVKHMRIHTREKPYSRSECDKTFREKGHMVKHMRVHTGKKLYLCSECDRAFSFRSVLVKHMRIHTGEKPYSCSECDKTFREKGHLVNHMRIHTGEKPYSCSECDKAFIKKEHLVKHMRIHTGEKPYSCSECDKAFSLKGNLVKHMRIHTGEKPYTCSECDKAFTQKEHLVKHMRIHTGEKPYSCSECDKAFSQKYVLVKHMEIHTGEKPYSCSECDKTFREKGHLVNHMRIHTGEKPYSCSQCDKALIKKEQLVKHMRIHTGEKPYSCSECDKTFREKGHLVNHMRIHTGEKPYSCSECDKAFIKKEHLVKHMRIHTGEKPYSCSECDKAFSLKGTLVKHMRIHTGEKPYTCSECDKAFTQKDHLVKHMRFHTGEKPYSCSECDKAFTIKETLVKHMRIHTGEKPYSCSECDKTFREKGHLVKHMRIHTGEKPYSCSECDKTFRVKGLLVKHMSIHTGEEPYSCSECDQTFGQKGKLVEHMRIHTEEKPYSCLDCDKAFSEKVKLEVHMSIQTREKPYPCLEFDKTFSHKGLLAEHMRIHTGEKSYSCSVCEKAFTQKEHLVKPMSIHTGEKSYMCSECDKLFSEKGKLVDHTRIYTGEKPYSCSECDKTFSDRRAIVRRNEGKILYFCLEFDNRFHNFAAHNMKTYAGRKLAWMWLGLYK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-