Cfla047718.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Coleophora flavipennella
Gene Symbol
-
Assembly
GCA_947284805.1
Location
OX369262.1:17958201-17960435[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 1.1e-06 0.0001 23.9 1.4 1 23 10 32 10 32 0.98
2 25 7.1e-08 6.7e-06 27.6 0.3 1 23 38 60 38 60 0.98
3 25 3.2e-06 0.0003 22.4 2.0 1 23 66 88 66 88 0.98
4 25 7.9e-07 7.5e-05 24.3 1.1 1 23 94 116 94 116 0.98
5 25 1.3e-07 1.2e-05 26.8 0.3 1 23 122 144 122 144 0.98
6 25 4e-07 3.8e-05 25.3 0.2 1 23 150 172 150 172 0.98
7 25 3e-07 2.8e-05 25.7 0.4 1 23 178 200 178 200 0.98
8 25 3e-07 2.8e-05 25.7 0.4 1 23 206 228 206 228 0.98
9 25 0.0015 0.14 14.0 1.3 3 23 236 256 234 256 0.86
10 25 1.2e-05 0.0011 20.7 1.0 1 23 262 284 262 284 0.98
11 25 4.6e-07 4.3e-05 25.1 1.5 1 23 290 312 290 312 0.98
12 25 2.9e-06 0.00027 22.6 2.1 1 23 318 340 318 340 0.98
13 25 1e-07 9.4e-06 27.2 2.8 1 23 346 368 346 368 0.98
14 25 3.2e-06 0.0003 22.4 2.0 1 23 374 396 374 396 0.98
15 25 4.4e-08 4.1e-06 28.3 0.7 1 23 402 424 402 424 0.98
16 25 1.5e-07 1.5e-05 26.6 0.3 1 23 430 452 430 452 0.98
17 25 6.1e-07 5.7e-05 24.7 0.6 1 23 458 480 458 480 0.98
18 25 1.9e-07 1.8e-05 26.3 0.3 1 23 486 508 486 508 0.98
19 25 4e-07 3.8e-05 25.3 0.2 1 23 514 536 514 536 0.98
20 25 1e-07 9.7e-06 27.1 0.8 1 23 542 564 542 564 0.98
21 25 0.00098 0.092 14.6 0.9 2 23 571 592 570 592 0.87
22 25 1.2e-05 0.0011 20.7 1.0 1 23 598 620 598 620 0.98
23 25 4.6e-07 4.3e-05 25.1 1.5 1 23 626 648 626 648 0.98
24 25 2.9e-06 0.00027 22.6 2.1 1 23 654 676 654 676 0.98
25 25 4.6e-06 0.00044 21.9 0.3 1 23 710 732 710 732 0.98

Sequence Information

Coding Sequence
ATGAGGATTTACACGGGAGAGAAACCATATTCATGTTCAGAATGTGACAAAGCATTCACTGTAAAAGGTTGTTTGGTGAAACACATGAGGATTCACACAGGAGAGAAACCATATTCATGTTTAGAATGTGACAAAGCATTCGCTCAAAAAGGTAATTTGACACAACATATGAGGATTCACACGGGAGAGAAACCATATTCATGTTCCAAATGTCACAAAGCATTCAGTGAAAAAGGTACTTTGGTGAAACACATCAGGATTCACGCCGAAGAGAAACCATATTCATGTTCAGAATGTGACAAAGCATTCACTAAAAAAAAAAAATTGGTAGAACACATGAGGATTCACACAGGAGAGAAACCATATTCATGTTCAGATTGTGACAAAGCATTCACTGTAAAAGGTAGTTTGGTGAAACACATGAGGATTCACATAGGAGAGAAACCATATTCATGTTTAGAATGTGACAAAGCATTCCCTCAAAAAAAAAATTTGGTAGAACACATGAGGATTCACACAGGAGAGAAACCATATTCATGTTCAGAATGTAACAAAGCATTTACTGTAAAAGGCAGTTTGGTGAAACACATGAGGATTCACACAGGAGAAAAACCATATTCATGTTCAGAATGTAACAAAGCATTTACTGTAAAAGGCAGTTTGGTGAAACACATGAGGATTCACACAGGAGAGAAACCATATTCGTGTTCAAAAGGTCACAAGGCATTCAGTCAAAAAGGTACTTTGGTGAAACACATGAGGACTCACACAGGAAAGTATTCATATTCATGTTTAGAATGTGAAAAAGTGTTTACTGAAAAAGTTCATTTGGTAAGTCACATGAAGATTCACACAGGAGAGAAACCATATTCATGTTCCAAATGTCAGAAAGCATTCAGTAAAAAAGGTAGTTTGGTGAAACACATGAGGATTCACACAGGAGAGAAACCATATTCTTGTTCAGAATGTGACAAACAGTTCTGTGAAAGAAGTGGTTTGGTGAAACACATGAGGATTCACACCGGAGAGAAACCATATTCGTGTTCAAAATGTCATAAAGCATTCGCTCGAAAAGGTAATTTGACACAACATATGAGGATTCACACGGGAGAGAAACCATATTCATGTTCCAAATGTCACAAAGCATTCAGTGAAAAAGGTACTTTGGTGAAACACATCAGGATTCACGCCGAAGAGAAATCATATTCATGTTCAGAATGTGACAAAGCATTCACTCAAAAAAAAAATTTGGTAGAACACATGAGGATTCACACAGGAGAGAAACCATATTCATGTTCAGAATGTGACAAAGCATTCACTGTAAAAGGTAGTTTGGCGAAACACATGAGGATTCACACAGGAGAGAAACCATATTCATGTTTAGAATGTGACAAAGCATTCTCTCAAAAAAAATATTTGGTAGAACACATGAGGATTCACACAGGAGAGAAACCATATTCATGTTCAGAATGTGACAAAGCATTCACTGTAAAAGGTAGTTTGGTGAAACACATGAGGATTCACACAGGAGAGAAACCATATTCATGTTTAGAATGTGACAAAGCATTCCCTCAAAAAAAAAATTTGGTAGAACACATGAGGATTCACACAGGAGAGAAACCATATTCATGTTCAGAATGTAACAAAGCATTTACTGTAAAAAGCAGTTTGGTGAAACACATGAGGATTCACACAGGAGAGAAACCATATTCGTGTCCAAAAGATCACAAGGCATTCAGTCAAAAAGGTACTTTGGTGAAACACATGAGGACTCACACAGGAAAGTATTCATATTCATGTTTAGAATGTGAAAAAGTGTTCACTGAAAAAGTTCATTTGGTAAGTCACATGAAGATTCACACAGGAAAGAAACCATATTCATGTTCCAAATGTCAGAAAGCATTCAGTAAAAAAGGTAGTTTGGTGAAACACATGAGGATTCACACAGGAGAGAAACCATATTCTTGTTCAGAATGTGACAAACAGTTCTGTGAAAGAAGTGGTTTGGTGAAACACATGAGGATTCACACAGGAGAGAAACTATTATCATGTTCAGAATATAATATGCTCTTCAGTGTCAGAAGTGCTTCTGTGAGACATCAAAGGAAACATAAATGGGAGAAACCTTATCCATGTCTAGAATGTGACAAACAATTTGACCAAAAATCTTACTTGGCAGCACACTTGAAGTCACATGCAAGCGAGGAACTTGCATGGATGTGGCTCAGATTTTAA
Protein Sequence
MRIYTGEKPYSCSECDKAFTVKGCLVKHMRIHTGEKPYSCLECDKAFAQKGNLTQHMRIHTGEKPYSCSKCHKAFSEKGTLVKHIRIHAEEKPYSCSECDKAFTKKKKLVEHMRIHTGEKPYSCSDCDKAFTVKGSLVKHMRIHIGEKPYSCLECDKAFPQKKNLVEHMRIHTGEKPYSCSECNKAFTVKGSLVKHMRIHTGEKPYSCSECNKAFTVKGSLVKHMRIHTGEKPYSCSKGHKAFSQKGTLVKHMRTHTGKYSYSCLECEKVFTEKVHLVSHMKIHTGEKPYSCSKCQKAFSKKGSLVKHMRIHTGEKPYSCSECDKQFCERSGLVKHMRIHTGEKPYSCSKCHKAFARKGNLTQHMRIHTGEKPYSCSKCHKAFSEKGTLVKHIRIHAEEKSYSCSECDKAFTQKKNLVEHMRIHTGEKPYSCSECDKAFTVKGSLAKHMRIHTGEKPYSCLECDKAFSQKKYLVEHMRIHTGEKPYSCSECDKAFTVKGSLVKHMRIHTGEKPYSCLECDKAFPQKKNLVEHMRIHTGEKPYSCSECNKAFTVKSSLVKHMRIHTGEKPYSCPKDHKAFSQKGTLVKHMRTHTGKYSYSCLECEKVFTEKVHLVSHMKIHTGKKPYSCSKCQKAFSKKGSLVKHMRIHTGEKPYSCSECDKQFCERSGLVKHMRIHTGEKLLSCSEYNMLFSVRSASVRHQRKHKWEKPYPCLECDKQFDQKSYLAAHLKSHASEELAWMWLRF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-