Basic Information

Insect: Coleophora flavipennella
Gene Symbol: Kr_1
Assembly: GCA_947284805.1
Location: OX369290.1:7469481-7471979[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 29 1.3e-05 0.0013 20.5 0.6 1 23 10 32 10 32 0.98

2 29 3.7e-07 3.5e-05 25.4 0.4 1 23 38 60 38 60 0.98

3 29 7.5e-07 7.1e-05 24.4 1.1 1 23 66 88 66 88 0.98

4 29 7.8e-06 0.00074 21.2 3.2 1 23 94 116 94 116 0.98

5 29 1.5e-06 0.00014 23.5 2.8 1 23 122 144 122 144 0.98

6 29 3.2e-08 3e-06 28.7 0.8 1 23 150 172 150 172 0.98

7 29 2.8e-07 2.7e-05 25.7 0.5 1 23 178 200 178 200 0.98

8 29 3.5e-05 0.0033 19.2 0.6 1 23 206 228 206 228 0.98

9 29 4.3e-05 0.004 18.9 1.6 1 23 234 256 234 256 0.98

10 29 1.8e-06 0.00017 23.3 4.6 1 23 262 284 262 284 0.98

11 29 1.9e-06 0.00018 23.1 1.6 1 23 290 312 290 312 0.96

12 29 2.6e-08 2.4e-06 29.0 0.1 1 23 318 340 318 340 0.98

13 29 2.8e-06 0.00027 22.6 2.1 1 23 346 368 346 368 0.98

14 29 6e-06 0.00057 21.6 2.4 1 23 374 396 374 396 0.98

15 29 4.6e-06 0.00044 21.9 1.7 1 23 403 425 403 425 0.98

16 29 5.9e-07 5.6e-05 24.7 0.3 1 23 431 453 431 453 0.98

17 29 1.2e-05 0.0011 20.7 1.0 1 23 459 482 459 482 0.95

18 29 3.5e-06 0.00033 22.3 1.4 1 23 488 510 488 510 0.98

19 29 6.8e-05 0.0064 18.3 0.3 1 23 516 539 516 539 0.95

20 29 8.1e-05 0.0077 18.0 3.3 1 23 545 567 545 567 0.98

21 29 9.9e-06 0.00093 20.9 1.5 1 23 573 595 573 595 0.98

22 29 2.6e-06 0.00024 22.7 0.3 1 23 601 624 601 624 0.97

23 29 2.3e-05 0.0021 19.8 6.3 1 23 630 652 630 652 0.98

24 29 9.6e-07 9e-05 24.1 0.3 1 23 658 680 658 680 0.98

25 29 0.0036 0.34 12.8 0.1 1 23 686 708 686 708 0.98

26 29 4.3e-07 4e-05 25.2 5.9 1 23 714 736 714 736 0.98

27 29 3.7e-05 0.0035 19.1 2.5 1 23 742 764 742 764 0.98

28 29 1.3e-07 1.3e-05 26.8 0.5 1 23 770 792 770 792 0.98

29 29 0.98 92 5.2 0.4 7 23 804 820 798 820 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	29	1.3e-05	0.0013	20.5	0.6	1	23	10	32	10	32	0.98
2	29	3.7e-07	3.5e-05	25.4	0.4	1	23	38	60	38	60	0.98
3	29	7.5e-07	7.1e-05	24.4	1.1	1	23	66	88	66	88	0.98
4	29	7.8e-06	0.00074	21.2	3.2	1	23	94	116	94	116	0.98
5	29	1.5e-06	0.00014	23.5	2.8	1	23	122	144	122	144	0.98
6	29	3.2e-08	3e-06	28.7	0.8	1	23	150	172	150	172	0.98
7	29	2.8e-07	2.7e-05	25.7	0.5	1	23	178	200	178	200	0.98
8	29	3.5e-05	0.0033	19.2	0.6	1	23	206	228	206	228	0.98
9	29	4.3e-05	0.004	18.9	1.6	1	23	234	256	234	256	0.98
10	29	1.8e-06	0.00017	23.3	4.6	1	23	262	284	262	284	0.98
11	29	1.9e-06	0.00018	23.1	1.6	1	23	290	312	290	312	0.96
12	29	2.6e-08	2.4e-06	29.0	0.1	1	23	318	340	318	340	0.98
13	29	2.8e-06	0.00027	22.6	2.1	1	23	346	368	346	368	0.98
14	29	6e-06	0.00057	21.6	2.4	1	23	374	396	374	396	0.98
15	29	4.6e-06	0.00044	21.9	1.7	1	23	403	425	403	425	0.98
16	29	5.9e-07	5.6e-05	24.7	0.3	1	23	431	453	431	453	0.98
17	29	1.2e-05	0.0011	20.7	1.0	1	23	459	482	459	482	0.95
18	29	3.5e-06	0.00033	22.3	1.4	1	23	488	510	488	510	0.98
19	29	6.8e-05	0.0064	18.3	0.3	1	23	516	539	516	539	0.95
20	29	8.1e-05	0.0077	18.0	3.3	1	23	545	567	545	567	0.98
21	29	9.9e-06	0.00093	20.9	1.5	1	23	573	595	573	595	0.98
22	29	2.6e-06	0.00024	22.7	0.3	1	23	601	624	601	624	0.97
23	29	2.3e-05	0.0021	19.8	6.3	1	23	630	652	630	652	0.98
24	29	9.6e-07	9e-05	24.1	0.3	1	23	658	680	658	680	0.98
25	29	0.0036	0.34	12.8	0.1	1	23	686	708	686	708	0.98
26	29	4.3e-07	4e-05	25.2	5.9	1	23	714	736	714	736	0.98
27	29	3.7e-05	0.0035	19.1	2.5	1	23	742	764	742	764	0.98
28	29	1.3e-07	1.3e-05	26.8	0.5	1	23	770	792	770	792	0.98
29	29	0.98	92	5.2	0.4	7	23	804	820	798	820	0.91

Sequence Information

Coding Sequence: ATGAGAATTCATACAGGAGAGAAACCATACTCATGTTTAGAATGTAATAGAGCTTTCGGTCAAAAAGGTCATTTAGCAGAACATATGAAGATTCACACAGGAGAGAAACCATATTCGTGTTTAGAATGTGACAAAGCATTCAGTTTCAAAGGAAGTTTGGCACGACACATGAGGATTCACACAGGAGATAAACCATATATGTGTTCAGAATGTGACAAAGTGTTTAGTCATGAAAATAGTTTGGTTATTCATATGAGGAGCCACACAGGAGAAAAACCATATATGTGTTCAGAATGTGCCAAAATGTTTAATCATAAACATAATTTGGTAGTCCACATGAGGATTCACACAGGAGAGAAACCATATTCATGTTTAAAATGTGACAAAGCATACACTCAAAAAAATCATCTTGCAAAACATATGAGAATTCACACAGAAGTGAAATCATATTCATGTTCAAAATGTGATAGAGCATTCAGTCAAAAAGGTAATTTAGCAAAACATATGAGGATTCACACAGGAGAGAAACCATATTCATGTTCCCAATGTGACAAAGCATTCAGTGATAAAAGAACTTTGGCAGTACACATGAGGATTCACACAGGAGAGAAATTATACTCGTGTTCAGAATGTGACAAAGTGTTTAATTATAAACAATCTATGGTAGATCACATGAGTATTCACAAAGGAGAGAAAACATATTCATGTTCAGAATGTGACAGAGCATTCAGATTAAAAAAACATTTAGCACAACATTTGAGTGTTCACACAGGAAAGAAACCATATTCATGTTCAGAATGTGACAAAATATTTAGTCATAAACACAGTTTGGTAAAGCACATGAAAATTCACACAGGAGATAAACCATATTTATGTTCAGAATGTAACAAAGCGTTCAGTAGAAAAGATTGTTTAGTAATACACATGAGGATTCACACAGGAGAGAAACCATATCCATGTTCAGAGTGTGACAAAGCATTCCCTCGAAAAGATAATTTAGCACAACATATGAGGATTCACAGAGGAGAGAAACCATATTCATGTTCAAAATGTGATAAAGCATTCAGAGTAAAAAGTCATTTGGCATATCACATAAAGGTTCACACAGGAGAGAAACCATATTCATGTTCAGAATGTGACAAAGTGTTTAGTCATAAAAGTAGTTTGGTATTCCACATGAGGATTCACACAGGAGAGAAACCATGTTATATGTGTTCAGAATGTGCTAAAATGTTCAGTCATAAAAAAAGTTTGGTAGTCCACATGAGGATTCACAAAGGAGAGAAACCATATTCATGTTCAGTATGTGACAAAGTGTTCATTACAAAAGGTAATTTGGCACAACACAAGAGGATTCACCTAGTAGAGAAACCATATTCATGTTCAGAATGTGATAGAGCATTTAGACAAAAAGGTCAATTAAAATCACATTTTGAGAGGATTCACTCAAGAAACAAACCATATTCATGTTCTGAATGTGACAAAGCATTCAGTGAAAAAAATCATTTGGTAAGGCATGTAAAGATTCACACAGGAGAGAAACCATATTCATGTTCAGAGTGTGATAGAGCATTTAGACAAATAGGTCAATTAAAAGCACATTTTGAGAGGATTCACTCAAGAAAGAAACCATATTCATGTTCTGAATGTGACAAAGCATTCTGTGAAAAAAATCATTTGGTAACGCATGTGAAGATTCACACAGGAGAGAAACCATATTCATGTTTAGAGTGTGACAAAGCATTCACTGGAAAACATAATTTGGCACAACACAAGAGGATTCACCTAGGAGAGAAACCATATTCATGTTCAGAATGTGAAAGAGCATTTAGACAAAAAGGTCAATTAAAAGCACATATTGAGAGGATTCACTCAAGAAAGAAATCATATTCATGTTCAGAATGTGAAAAAGTGTTTAGTCATAAACATCATTTGGTAAAGCATGTGAAGATTCACACAGGAGAGAAACCATATTCATGTTCAGTATGTGACAAAGCGTTCATTACAAAAGGTAATTTAGCACAACACAAGAGGATTCACACAGGAGAAAAACCATACTCCTGTTTAGAATGTGCTGGAGCATTCAGTCAAAAAGGTCATTTAGCAGGACATATCAAGATTCACACAGGAGAGAAACCATATTCATGTTCAAAATGTGACAAAGTGTTTAGTCATAAACATAATTTGGTAAACCACATGAGGAGTCACAAAGGAAGGAAACCATATTCATGTTTAGAATGTGACAAAAAGTTCAGAGTCAAAAATCATTTGGTAAAGCATGTGAAGATTCACACAGTAGAGAAACCATATTCATGTTCAGAATGTAATAAAACATTCAGTGTAAAAGATAATTTGGCACAACACATAAGGATTCACAGCGGGGAGAAACTATATTCATGTTCAGGAAGTGACAAACAATTCCACCAACAAAATTACTTGGCAGCACACTTAAAGGTACATGCAGGTAGTAAACTTCCATGGATATGGCTCGGAATTTAA
Protein Sequence: MRIHTGEKPYSCLECNRAFGQKGHLAEHMKIHTGEKPYSCLECDKAFSFKGSLARHMRIHTGDKPYMCSECDKVFSHENSLVIHMRSHTGEKPYMCSECAKMFNHKHNLVVHMRIHTGEKPYSCLKCDKAYTQKNHLAKHMRIHTEVKSYSCSKCDRAFSQKGNLAKHMRIHTGEKPYSCSQCDKAFSDKRTLAVHMRIHTGEKLYSCSECDKVFNYKQSMVDHMSIHKGEKTYSCSECDRAFRLKKHLAQHLSVHTGKKPYSCSECDKIFSHKHSLVKHMKIHTGDKPYLCSECNKAFSRKDCLVIHMRIHTGEKPYPCSECDKAFPRKDNLAQHMRIHRGEKPYSCSKCDKAFRVKSHLAYHIKVHTGEKPYSCSECDKVFSHKSSLVFHMRIHTGEKPCYMCSECAKMFSHKKSLVVHMRIHKGEKPYSCSVCDKVFITKGNLAQHKRIHLVEKPYSCSECDRAFRQKGQLKSHFERIHSRNKPYSCSECDKAFSEKNHLVRHVKIHTGEKPYSCSECDRAFRQIGQLKAHFERIHSRKKPYSCSECDKAFCEKNHLVTHVKIHTGEKPYSCLECDKAFTGKHNLAQHKRIHLGEKPYSCSECERAFRQKGQLKAHIERIHSRKKSYSCSECEKVFSHKHHLVKHVKIHTGEKPYSCSVCDKAFITKGNLAQHKRIHTGEKPYSCLECAGAFSQKGHLAGHIKIHTGEKPYSCSKCDKVFSHKHNLVNHMRSHKGRKPYSCLECDKKFRVKNHLVKHVKIHTVEKPYSCSECNKTFSVKDNLAQHIRIHSGEKLYSCSGSDKQFHQQNYLAAHLKVHAGSKLPWIWLGI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -