Cfla038582.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Coleophora flavipennella
Gene Symbol
-
Assembly
GCA_947284805.1
Location
OX369293.1:10534101-10536404[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 27 1.7e-07 1.6e-05 26.5 3.6 1 23 4 26 4 26 0.99
2 27 1.6e-07 1.5e-05 26.6 0.2 1 23 32 54 32 54 0.98
3 27 4.2e-07 3.9e-05 25.2 1.6 1 23 60 82 60 82 0.98
4 27 8.9e-07 8.4e-05 24.2 0.3 1 23 88 110 88 110 0.98
5 27 2.6e-05 0.0024 19.6 1.0 1 23 116 138 116 138 0.99
6 27 1.6e-06 0.00015 23.4 0.2 1 23 144 166 144 166 0.98
7 27 2.2e-07 2.1e-05 26.1 2.3 1 23 172 194 172 194 0.99
8 27 1.6e-06 0.00015 23.4 0.2 1 23 200 222 200 222 0.98
9 27 1.4e-06 0.00013 23.5 0.2 1 23 228 250 228 250 0.98
10 27 2.2e-07 2.1e-05 26.1 2.3 1 23 256 278 256 278 0.99
11 27 1.6e-06 0.00015 23.4 0.2 1 23 284 306 284 306 0.98
12 27 1.4e-06 0.00013 23.5 0.2 1 23 312 334 312 334 0.98
13 27 3.8e-07 3.6e-05 25.3 1.1 1 23 340 362 340 362 0.98
14 27 1.4e-06 0.00013 23.5 0.2 1 23 368 390 368 390 0.98
15 27 2.2e-07 2.1e-05 26.1 0.8 1 23 396 418 396 418 0.98
16 27 7e-07 6.6e-05 24.5 0.4 1 23 424 446 424 446 0.98
17 27 8e-05 0.0076 18.0 0.4 1 23 452 474 452 474 0.98
18 27 3.1e-06 0.00029 22.5 1.5 1 23 480 502 480 502 0.98
19 27 1.2e-07 1.1e-05 26.9 1.5 1 23 508 530 508 530 0.98
20 27 6.6e-05 0.0063 18.3 0.3 1 23 536 558 536 558 0.96
21 27 7.2e-05 0.0068 18.2 0.7 1 23 564 586 564 586 0.96
22 27 8.6e-07 8.1e-05 24.2 1.5 1 23 592 614 592 614 0.96
23 27 1e-06 9.7e-05 24.0 1.5 2 23 621 642 620 642 0.97
24 27 1.7e-07 1.6e-05 26.4 0.4 1 23 648 670 648 670 0.98
25 27 3.1 3e+02 3.6 0.2 1 15 676 690 676 693 0.86
26 27 6.3e-05 0.0059 18.4 1.1 1 23 704 726 704 726 0.98
27 27 0.00033 0.031 16.1 2.0 1 23 732 754 732 754 0.96

Sequence Information

Coding Sequence
ATGACGGCTTATTCGTGTTCAAAATGTGACAAAGTATTTAGTCATAAAGGTAATATGGTAAAACACATGCGGACTCACACAGGAGAGAAACCATATTCATGTTCAGAATGTGGCAAAGCATTTAGTGTTAAAGGCCTTTTGGTAAAACACATGCGGATTCACACAGGAGAGAAACCATATTCATGTTTAGAATGTGACAAAGTGTTCAGGTTGAAATTTAATTTGACAAAACACATGAGGATTCACACAGGAGAGAAACCATATTCATGTTCAGAATGTGACAAAGCATTCACTGCAAGATATAATCTGGTAAACCACATTCGGATTCACACAAAAAAGAAACCATATTCATGTTCAGAATGTAACCAAGCATTCACTTTAAGAAATAGTCTGGTATATCACATGAGGACTCACACAGGAGAGAAACCATATTCATGTTCAGAATGTGACAAAGCATTTAGTGGTAAAGGTCTTTTGGTAAAACACTTGCGAATTCACACGGGAGAAAAACCATATTCATGTTTAGAATGTGACAAAGTATTTAGTCATAAAGGTAATATGGTAAAACACATGCGGACTCACACAGGAGAGAAACCATATTCATGTTCAGAATGTGACAAAGCATTTAGTGGTAAAGGTCTTTTGGTAAAACACTTGCGAATTCACACGGGAGAAAAACCATATTCATGTTTAGAATGTGACAAAGCATTTAGTGAAAAAGGTTCTTTGGTAAATCACATGAGGATTCACACAGGAGAGAAACCATATTCATGTTTAGAATGTGACAAAGTATTTAGTCATAAAGGTAATATGGTAAAACACATGCGGACTCACACAGGAGAGAAACCATATTCATGTTCAGAATGTGACAAAGCATTTAGTGGTAAAGGTCTTTTGGTAAAACACTTGCGAATTCACACGGGAGAAAAACCATATTCATGTTTAGAATGTGACAAAGCATTTAGTGAAAAAGGTTCTTTGGTAAATCACATGAGGATTCACACAGGAGAGAAACCATATTCATGTTCAGAATGTAACAAAGCATTTAGTGTTAAAGGTCATTTGGTAAATCACATGCGGATTCACACAGGAGAGAAACCATATTCATGTTTAGAATGTGACAAAGCATTTAGTGAAAAAGGTTCTTTGGTAAATCATATGAGAATTCACACAGGAGAGAAACCATATTCATGTTCAGAATGTGACAAAGCATTTAGTGTTAAAGGTCATTTGGTAAATCACATGCGGATTCACACAGGAGAGAAACCATATTCATGTTCAGAATGTGACAAAGCATATAGTAAAAAAGGTTCTTTGGTAAATCACATGAGGATTCACACAAAAGAGAAACCATATTCATGTTTAGAATGTAACAAAGCATTTAATGTTAAAAGTATTTTGGTAAAACACATGCGGATTCACACAGGAGAAAAACCATATTCATGTTTAGAATGCGGCAAAGCATTCCGTATAAAACATACTTTGGTAAAGCACATGAGAATTCACACAGGAGAGAAACCATATTCATGTTCAGAATGTGACAAAGCGTTCAGTGAGAAATCTAGTTTTACAAAACACATGAGGATTCACACAGGAGAGAAACCACATGCATGTTCAGAATGTGACCAAGCATTTATTGTAAGAAATAGTCTGGTAAATCACATGCGGATTCACACAGGAGAGAAACCATATTTATGTTTAGAATGTGGCAAAGCATTCAGTATAATACATACTTTAGTAAAGCACATGAGAATGCACACAGGAGAGAAACCATATTTATGTTCAGAATGTAACAAAGCGTTCAGTGAGAAATCTAGTTTTACAAAACACATGAGGATTCACACGGGAGAGAAACCATCTTCATGTTCAGAATGTGACAAAACATTTAGTGAAAAGGGTCATTTGGTAAATCATATGCGGATTCACACAGAAGAGAAACCATATTCATGTTCTGTATGTGGCAAAGCATTTAGTGAAAAACGTGATTTGGTAAAACACATGAGGATTCACTCAGGAGAGAAACCATATTCATGTTCAGAATGTATCAAAGTGTTCAGTGGAAAAGATGATATAGAAAAATATTTGAGGATTCATACAGGAGAGAACTCATATTCGTGTTTAGGATGTAATATGCTTTTCAGTGACAAAAGTGCTTTTGTTAGACATCAGAGGAAACACGAAAGGAAGAACCCTTATCTATGTTTACAGTGTGACAGTCAATTTAACCAAAAATCTCACTTGGCAGCACACTTAAAAACACATTGTACAGGTAAAAAACTTGCATGGATATGGCTCGGAATTTAA
Protein Sequence
MTAYSCSKCDKVFSHKGNMVKHMRTHTGEKPYSCSECGKAFSVKGLLVKHMRIHTGEKPYSCLECDKVFRLKFNLTKHMRIHTGEKPYSCSECDKAFTARYNLVNHIRIHTKKKPYSCSECNQAFTLRNSLVYHMRTHTGEKPYSCSECDKAFSGKGLLVKHLRIHTGEKPYSCLECDKVFSHKGNMVKHMRTHTGEKPYSCSECDKAFSGKGLLVKHLRIHTGEKPYSCLECDKAFSEKGSLVNHMRIHTGEKPYSCLECDKVFSHKGNMVKHMRTHTGEKPYSCSECDKAFSGKGLLVKHLRIHTGEKPYSCLECDKAFSEKGSLVNHMRIHTGEKPYSCSECNKAFSVKGHLVNHMRIHTGEKPYSCLECDKAFSEKGSLVNHMRIHTGEKPYSCSECDKAFSVKGHLVNHMRIHTGEKPYSCSECDKAYSKKGSLVNHMRIHTKEKPYSCLECNKAFNVKSILVKHMRIHTGEKPYSCLECGKAFRIKHTLVKHMRIHTGEKPYSCSECDKAFSEKSSFTKHMRIHTGEKPHACSECDQAFIVRNSLVNHMRIHTGEKPYLCLECGKAFSIIHTLVKHMRMHTGEKPYLCSECNKAFSEKSSFTKHMRIHTGEKPSSCSECDKTFSEKGHLVNHMRIHTEEKPYSCSVCGKAFSEKRDLVKHMRIHSGEKPYSCSECIKVFSGKDDIEKYLRIHTGENSYSCLGCNMLFSDKSAFVRHQRKHERKNPYLCLQCDSQFNQKSHLAAHLKTHCTGKKLAWIWLGI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-