Cfla036331.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Coleophora flavipennella
Gene Symbol
-
Assembly
GCA_947284805.1
Location
OX369283.1:9133764-9136001[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 26 1.8e-05 0.0017 20.1 0.1 1 22 10 31 10 31 0.96
2 26 6.7e-07 6.3e-05 24.6 1.4 1 23 38 60 38 60 0.98
3 26 3.4e-08 3.2e-06 28.7 0.8 1 23 66 88 66 88 0.99
4 26 7.1e-07 6.7e-05 24.5 0.6 1 23 94 116 94 116 0.98
5 26 1.1e-07 1e-05 27.0 1.4 1 23 122 144 122 144 0.98
6 26 2.1e-06 0.00019 23.0 1.2 1 23 150 172 150 172 0.98
7 26 1.5e-05 0.0014 20.3 0.5 5 23 182 200 180 200 0.96
8 26 5.6e-05 0.0053 18.5 0.3 1 23 206 228 206 228 0.98
9 26 1.3e-05 0.0012 20.5 0.9 1 23 234 256 234 256 0.98
10 26 1.3e-06 0.00012 23.7 0.5 1 23 262 284 262 284 0.98
11 26 6.6e-07 6.2e-05 24.6 1.8 1 23 290 312 290 312 0.98
12 26 5.1e-07 4.8e-05 24.9 0.4 1 23 318 340 318 340 0.98
13 26 1.6e-07 1.5e-05 26.5 0.5 1 23 346 368 346 368 0.98
14 26 3.3e-06 0.00031 22.4 0.2 1 23 374 396 374 396 0.96
15 26 1.7e-07 1.6e-05 26.4 0.6 1 23 402 424 402 424 0.98
16 26 8.4e-07 7.9e-05 24.3 1.1 1 23 430 453 430 453 0.98
17 26 3.5e-07 3.3e-05 25.4 0.4 1 23 459 481 459 481 0.98
18 26 2.2e-08 2e-06 29.3 0.8 1 23 487 509 487 509 0.98
19 26 3.3e-06 0.00031 22.4 0.2 1 23 515 537 515 537 0.96
20 26 5.1e-08 4.8e-06 28.1 0.8 1 23 543 565 543 565 0.98
21 26 3.5e-06 0.00033 22.3 0.4 3 23 573 593 571 593 0.98
22 26 3.1e-08 2.9e-06 28.8 1.3 1 23 599 621 599 621 0.98
23 26 3.1e-06 0.00029 22.5 0.2 1 23 627 649 627 649 0.96
24 26 3.3e-07 3.1e-05 25.5 0.5 1 23 655 677 655 677 0.98
25 26 0.00024 0.023 16.5 1.7 1 23 683 705 683 705 0.98
26 26 0.016 1.5 10.8 8.1 1 23 711 733 711 733 0.96

Sequence Information

Coding Sequence
ATGAGGATTCACACAGGAGAGAAACCATATTCATGTTCAGATTGTGACAAAGCATTTATTGAAAAAGGTAATTTTGTAACACACATGAGGATTTACACAGGAGAGAAACAATATTCCTGTTCAGAATGTGACAAAGTATTCAGGAAAAAACAACAATTAGTATACCATATGAGGATTCACGCAGGACAGAAACAATATACATGTTCAGAATGTGAGAAAACGTTCAGTCAAAAAGGTAATTTGGTAACACACATGAGGATTCACACAGGAGAGAAACCATATTCATGTTTAGAATGTGACAAAGCATTCAGGAAAAAAGAATATTTAGCAAACCATATGAGGATTCACACAGGAGAGAAACCATATTCATGTTCTGAATGTGACAAAGCATTCAGTGTAAAATCTCATTTGGTAACACACATGAGGATTCACACAGGAGAGAAACCATATTCATGTTCAGAATGTGACATAGCGTTCAGTCGAAAAGAATGTTTGGTAACACACATGAGGATTCACATAAGAGAGAAACCATATTCATCTTCAGATTGTGACAAAGTGTTTAATCAAAAGGGTCATTTGGTATCACACATGAGGATTCACACAGGAGAGAAACCATATTCATGTTCCGAATGTGACAAAGCATTCAGATTAAAAGATATTTTGGTAAACCATATGAGGATTCACACAGGAGAGAAACTATATTCATGTTCCAAATGTGACAATGCGTACATTAAAAAAAGTTATTTAGCAAGACACATGAGGATTCACACAAAAGAGAAACTATATTCATGTTCAGAATGTGACAAAGTGTTTATTAAAAAAGGTTATTTGGTAACACACATGAAGATTCACACAGGAGACAAACCATATTCATGTGCAGAATGCAACAGAGCGTTCAGTCGAAAAGATTGTTTGGTAAGACACATGAGGATTCACACAGGAGAGAAACCATATTCATGTTCCGAATGTGACAAAGCATTCAGATTAAAAGATAGTTTGGTAAACCATATGAGGATTCACACAGAAGAGAAAAAATATTCATGTTTAGAATGTAACAAAGCATTCAGTAGAAAAGATCTATTAATAAAGCACATAAGGATACATACAGGAGAGAAACCGTATTTATGTTCAGAATGTGACAAAGCATTCAGTATTAAAGTTAATTTGGTAAACCATATGAGGATTCACGCAGGAGAGAAACAATATTCATGTTTAGAATGTGAGAAAACATTCAGTCAAAAAGGTAATTTGGTAACACACATGAGGATTCACACAGGAGAGAAACCATATTCATGTTCAGAATGTTACAGAGCGTTCAGTCGAAAGGGTACTTTGGTAAGACACATGAGGAGGATTCACATAAGAGAGAAACCATATTCATGTTCTGACTGTGACAAAGCATTCAGATTAAAAGATAGTTTGGTAAACCATATGAGGATTCACACAGGAGAGAAACAATATTCATGTTCAGAATGTAACAAAGCATTCAGTAGAAAAGATCTATTAATAAAGCACATGAGGATACATACAGGAGAGAAACCGTATTTATGTTCAGAATGTGACAAAGCATTCAGTATTAAAGTTAATTTGGTAAACCATATGAGGATTCACGCAGGACAGAAACAATATTCATGTTCAGAATGTGAGAAAACGTTCAGTCAAAAAGGTAATTTGGTAACACACATGAGGATTCACACAGGAGAGAAACCATATTGGTGTTCAGAATGTTACAGAGCGTTCAGTCGAAAAGGTAGTTTGGTAAGACACATGAGGATTCACACAGGAGAGAAACAATACTCATGTTCAGAATGTAACAAAGCATTCAGTAGAAAATATCTATTAATAAAGCACATGAGGATACATACAGGAGAGAAACCGTATTTATGTTCAGAATGTGACAAAGCATTCAGTATTAAAGTTAATTTGGTAAACCATATGAGGGTTCATGCAGGAGAGAAACAATATTCATGTTTGGAATGTGAGAAAATGTTCAGTCAAAAAGGTAATTTGGTAACACACATGAGGATTCACACAGGAGAAAAACCATATTCATGTCCAAAATGTTACATGCTATTCAGTAACAGAAGTGCTTTTATTAGACATCAAAGTAAACACGAAAGAGAGAGCCAATATCTATGTTGTGAATGTACCAAACATTTCCACAAAAAATCTTACTTAGCAGCTCATTTGAAGACTCATGCAGGCAACAAACTTGCTTGGATATGGCTCAGAATTTGA
Protein Sequence
MRIHTGEKPYSCSDCDKAFIEKGNFVTHMRIYTGEKQYSCSECDKVFRKKQQLVYHMRIHAGQKQYTCSECEKTFSQKGNLVTHMRIHTGEKPYSCLECDKAFRKKEYLANHMRIHTGEKPYSCSECDKAFSVKSHLVTHMRIHTGEKPYSCSECDIAFSRKECLVTHMRIHIREKPYSSSDCDKVFNQKGHLVSHMRIHTGEKPYSCSECDKAFRLKDILVNHMRIHTGEKLYSCSKCDNAYIKKSYLARHMRIHTKEKLYSCSECDKVFIKKGYLVTHMKIHTGDKPYSCAECNRAFSRKDCLVRHMRIHTGEKPYSCSECDKAFRLKDSLVNHMRIHTEEKKYSCLECNKAFSRKDLLIKHIRIHTGEKPYLCSECDKAFSIKVNLVNHMRIHAGEKQYSCLECEKTFSQKGNLVTHMRIHTGEKPYSCSECYRAFSRKGTLVRHMRRIHIREKPYSCSDCDKAFRLKDSLVNHMRIHTGEKQYSCSECNKAFSRKDLLIKHMRIHTGEKPYLCSECDKAFSIKVNLVNHMRIHAGQKQYSCSECEKTFSQKGNLVTHMRIHTGEKPYWCSECYRAFSRKGSLVRHMRIHTGEKQYSCSECNKAFSRKYLLIKHMRIHTGEKPYLCSECDKAFSIKVNLVNHMRVHAGEKQYSCLECEKMFSQKGNLVTHMRIHTGEKPYSCPKCYMLFSNRSAFIRHQSKHERESQYLCCECTKHFHKKSYLAAHLKTHAGNKLAWIWLRI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-