Cfla036442.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Coleophora flavipennella
Gene Symbol
-
Assembly
GCA_947284805.1
Location
OX369283.1:11238796-11241111[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 26 1.4e-07 1.3e-05 26.7 0.2 1 23 10 32 10 32 0.98
2 26 1.2e-07 1.2e-05 26.9 0.9 1 23 38 60 38 60 0.98
3 26 4e-08 3.7e-06 28.4 2.1 1 23 66 88 66 88 0.98
4 26 1.4e-07 1.3e-05 26.7 0.2 1 23 94 116 94 116 0.98
5 26 1.2e-07 1.2e-05 26.9 0.9 1 23 122 144 122 144 0.98
6 26 4e-08 3.7e-06 28.4 2.1 1 23 150 172 150 172 0.98
7 26 1.4e-07 1.3e-05 26.7 0.2 1 23 178 200 178 200 0.98
8 26 2.3e-07 2.2e-05 26.0 0.2 1 23 206 228 206 228 0.98
9 26 2.8e-08 2.6e-06 28.9 1.9 1 23 234 256 234 256 0.98
10 26 7e-08 6.6e-06 27.7 0.4 1 23 262 284 262 284 0.98
11 26 4.6e-07 4.3e-05 25.1 0.9 1 23 290 312 290 312 0.98
12 26 9.8e-07 9.3e-05 24.0 0.1 1 23 318 340 318 340 0.98
13 26 3.3e-05 0.0031 19.3 0.8 1 23 346 369 346 369 0.96
14 26 2.3e-08 2.1e-06 29.2 2.6 1 23 375 397 375 397 0.98
15 26 1.4e-07 1.4e-05 26.7 0.6 1 23 403 425 403 425 0.98
16 26 0.00031 0.029 16.2 3.7 1 23 431 453 431 453 0.97
17 26 1e-06 9.5e-05 24.0 0.2 1 23 459 481 459 481 0.98
18 26 8.7e-07 8.2e-05 24.2 0.6 1 23 487 509 487 509 0.98
19 26 2.9e-07 2.8e-05 25.7 3.4 1 23 515 537 515 537 0.98
20 26 3.1e-07 2.9e-05 25.6 0.3 1 22 543 564 543 564 0.96
21 26 0.0038 0.36 12.8 0.7 1 20 571 590 571 592 0.95
22 26 8.4e-07 7.9e-05 24.3 0.2 1 23 598 620 598 620 0.98
23 26 9.8e-08 9.3e-06 27.2 0.3 1 23 626 648 626 648 0.98
24 26 7.1e-06 0.00067 21.3 3.6 1 23 654 676 654 676 0.98
25 26 7.9e-05 0.0074 18.1 0.4 1 23 682 703 682 703 0.96
26 26 0.45 43 6.2 0.9 8 23 744 759 743 759 0.95

Sequence Information

Coding Sequence
ATGAGGATTCACACAGGAGAAAAACCATATTCATGTTCAGAATGTGACAAAGCATTCAGTGTAAAAGGTAATTTAGTACAACACATGAGGATTCACACAGGAGAAAAACCATATTCATGTTCAGAATGTGACAAAGCATTCAGTGTAAAAGGTCATTTGGAACAACACATGAGGATTCACGCAGGAGAAAAACCATATTCATGTACAGAATGTGACAAAGTGTTCAATCGAAAAGATCATTTGGTACAACACATGAGGATTCACACAGGATACAAATCATATTCATGTTCAGAATGTGACAAAGCATTCAGTGTAAAAGGTAATTTGGTACAACACATGAGGATTCACACAGGAGAAAAACCATATTCATGTTCAGAATGTGACAAAGCATTCAGTGTAAAAGGTCATTTGGAACAACACATGAGGATTCACACAGGAGAAAAACCATATTCATGTACAGAATGTGACAAAGTGTTCAATCGAAAAGATCATTTGGTACAACACATGAGGATTCACACAGGATACAAATCATATTCATGTTCAGAATGTGACAAAGCATTCAGTGTAAAAGGTAATTTGGTACAACACATGAGGATTCACACAGGAGAAAAACCATATTCATGTTTAGAATGTGACAAAGCATTCAGTGTAAAAGGTAATTTGGAACAACACATGAGGATTCACACAGGAGAAAAACCATATTCATGTACAGAATGTGACAAAGTGTTCACTCGAAAAGGTCATTTGGTACAACACATGAGGATTCACACAGGATACAAACCATATTCATGTTCAGAATGTGACAAAGTGTTCACTCGAAAAGGTAGTTTGGTACAACACATTAGGATTCACACAGGAGAAAAACCATATTCATGTTCAGAATGTGACAAAGCATTCAGTGTAAAAGTTCATTTGGTACAACACATGAGGATTCACACAGGAGAAAAATTATATTCATGTTCAGAATGTGACAAAGCATTCAGTGTAAAAGGTAGTTTGGTACAACACATTAGGATTCACACAGGAGAAAAACCATATTCATGTTCAGAATGTGACAAAGCATTCAGTGTAAAAGGTCATTTGGTACAACACAATATGAGGATTCACACAGGAGAAAAACCATATTCATGTACAGAATGTGACAAAGTGTTCACTCGAAAAGATCATTTGTTACAACACATGAGGATTCACACAGGATACAAACCATATTCATGTTCAGAATGTGACAAAGTGTTCAGTCAAAAAAGTAGTTTGGGAAGACATGTGAGGATCCACAAAGGAGAAAAACCACATTCATGTTCAAAATGTCACAACGCATTCAGTGAAAAAGCTACTTTGGTGAAACACATGAGGATTCACACAGGAGAGAAACCATATTCTTGTTCAGAATGTGACAAAGCATTCAGAGTAAAAGGTACATTGGTAATCCACATGAGAATTCACACAGGTGAGAAACCATATTCATGTTCAGAATGTGAGAAAGCGTTCAGTGAAAAAAGTAAATTGGTAAACCACATGAGGATTCACGCAGGAGAAAAACCATATTCATGTTCAGAATGTGACAAAGTGTTCACTCATAAAGGTCATCTGGTAAATCACATGAAGATTCACACAGGAGAGAAACCATATTCATGTTCAGAATGTGACAAAGTGTTCCGTCAAAAAAGTAATTTGGGAACACACATGAGGATTAACAAAGGAGAGAAACCATATTCATGTTCAGAATGTGACAGTGCATTCAGTGTAAAAGGTCATTTGTTACAACACAGGATTCACACAGGAGAGGAACCATATTCATGTACAGAATGTGACAAAGCATTCAGTGTAAAAGGTAGTTTGGTACAACACATTAGGATTCACACAGGAGAGAAACCATATTCATGTACAGAATGTGACAAAGCATTCAGTGTAAAAGTTAATTTGGTAAAACACATGAGGATTCACACAGGACAAAAACCATATTCATGTTCAAAATGTCACAAAGCATTCAGTAAAAAAGGTAGTTTGGTGAAACACACGAGGGTTCACACAGACGATAAACCATATTCATGTTCAGAATGTGACAAAGCATTCAGTGTAAAAGGTTTGTTGAAACACATGAGGATTCACACAGTAGAGAAACTATTATCATGTTCAGAATATAATATGCTCTTCAGTGTCAGAAGTGCTTCTGTGAGACATCAGAGGAAACATAAAAAGGAGAACCCTTATTTATGTCTTGAAAGTGAAAAACAATTCGACCACAAATCTTTCTTGGCAGCACACTTGAAGACACATGCAAGCAATGAGCTTGCATGGATATGGCTCGGATTTTAA
Protein Sequence
MRIHTGEKPYSCSECDKAFSVKGNLVQHMRIHTGEKPYSCSECDKAFSVKGHLEQHMRIHAGEKPYSCTECDKVFNRKDHLVQHMRIHTGYKSYSCSECDKAFSVKGNLVQHMRIHTGEKPYSCSECDKAFSVKGHLEQHMRIHTGEKPYSCTECDKVFNRKDHLVQHMRIHTGYKSYSCSECDKAFSVKGNLVQHMRIHTGEKPYSCLECDKAFSVKGNLEQHMRIHTGEKPYSCTECDKVFTRKGHLVQHMRIHTGYKPYSCSECDKVFTRKGSLVQHIRIHTGEKPYSCSECDKAFSVKVHLVQHMRIHTGEKLYSCSECDKAFSVKGSLVQHIRIHTGEKPYSCSECDKAFSVKGHLVQHNMRIHTGEKPYSCTECDKVFTRKDHLLQHMRIHTGYKPYSCSECDKVFSQKSSLGRHVRIHKGEKPHSCSKCHNAFSEKATLVKHMRIHTGEKPYSCSECDKAFRVKGTLVIHMRIHTGEKPYSCSECEKAFSEKSKLVNHMRIHAGEKPYSCSECDKVFTHKGHLVNHMKIHTGEKPYSCSECDKVFRQKSNLGTHMRINKGEKPYSCSECDSAFSVKGHLLQHRIHTGEEPYSCTECDKAFSVKGSLVQHIRIHTGEKPYSCTECDKAFSVKVNLVKHMRIHTGQKPYSCSKCHKAFSKKGSLVKHTRVHTDDKPYSCSECDKAFSVKGLLKHMRIHTVEKLLSCSEYNMLFSVRSASVRHQRKHKKENPYLCLESEKQFDHKSFLAAHLKTHASNELAWIWLGF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-