Basic Information

Insect: Coleophora flavipennella
Gene Symbol: -
Assembly: GCA_947284805.1
Location: OX369262.1:15382836-15385325[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 28 0.89 84 5.3 6.7 1 23 10 32 10 32 0.95

2 28 5.6e-06 0.00053 21.7 0.4 1 23 38 60 38 60 0.99

3 28 0.0017 0.16 13.9 0.6 7 23 72 88 66 88 0.91

4 28 8.2e-07 7.7e-05 24.3 1.4 1 23 94 116 94 116 0.97

5 28 5.9e-08 5.6e-06 27.9 0.9 1 23 122 144 122 144 0.98

6 28 1.1e-08 1.1e-06 30.2 1.0 1 23 150 172 150 172 0.98

7 28 7.6e-07 7.1e-05 24.4 0.7 1 23 178 200 178 200 0.98

8 28 3.8e-07 3.6e-05 25.3 1.5 1 23 206 228 206 228 0.98

9 28 4.4e-05 0.0041 18.9 2.2 1 23 234 256 234 256 0.98

10 28 8.8e-08 8.3e-06 27.3 2.3 1 23 262 284 262 284 0.98

11 28 2e-07 1.9e-05 26.2 0.9 1 23 290 312 290 312 0.98

12 28 1.4e-06 0.00013 23.6 1.9 1 23 318 340 318 340 0.98

13 28 5.8e-09 5.5e-07 31.1 0.9 1 23 346 368 346 368 0.98

14 28 9.7e-06 0.00092 20.9 1.1 1 23 374 397 374 397 0.96

15 28 4.4e-05 0.0041 18.9 2.2 1 23 403 425 403 425 0.98

16 28 4.4e-05 0.0041 18.9 2.2 1 23 431 453 431 453 0.98

17 28 1.1e-07 1e-05 27.1 2.0 1 23 459 481 459 481 0.98

18 28 7.8e-07 7.4e-05 24.4 3.2 1 23 487 509 487 509 0.97

19 28 9.2e-07 8.7e-05 24.1 2.6 1 23 515 537 515 537 0.98

20 28 1.2e-07 1.1e-05 26.9 0.9 1 23 543 565 543 565 0.98

21 28 1.8e-07 1.7e-05 26.3 1.2 1 23 571 593 571 593 0.98

22 28 4.4e-05 0.0041 18.9 2.2 1 23 599 621 599 621 0.98

23 28 6.1e-08 5.7e-06 27.9 2.2 1 23 627 649 627 649 0.98

24 28 6.1e-08 5.8e-06 27.8 0.6 1 23 655 677 655 677 0.98

25 28 2.4e-07 2.2e-05 26.0 1.9 1 23 683 705 683 705 0.96

26 28 1.1e-06 0.0001 23.9 2.2 1 23 711 733 711 733 0.98

27 28 1.4e-08 1.3e-06 29.8 2.3 1 23 739 761 739 761 0.98

28 28 3.6e-05 0.0034 19.1 2.3 1 23 795 817 795 817 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	28	0.89	84	5.3	6.7	1	23	10	32	10	32	0.95
2	28	5.6e-06	0.00053	21.7	0.4	1	23	38	60	38	60	0.99
3	28	0.0017	0.16	13.9	0.6	7	23	72	88	66	88	0.91
4	28	8.2e-07	7.7e-05	24.3	1.4	1	23	94	116	94	116	0.97
5	28	5.9e-08	5.6e-06	27.9	0.9	1	23	122	144	122	144	0.98
6	28	1.1e-08	1.1e-06	30.2	1.0	1	23	150	172	150	172	0.98
7	28	7.6e-07	7.1e-05	24.4	0.7	1	23	178	200	178	200	0.98
8	28	3.8e-07	3.6e-05	25.3	1.5	1	23	206	228	206	228	0.98
9	28	4.4e-05	0.0041	18.9	2.2	1	23	234	256	234	256	0.98
10	28	8.8e-08	8.3e-06	27.3	2.3	1	23	262	284	262	284	0.98
11	28	2e-07	1.9e-05	26.2	0.9	1	23	290	312	290	312	0.98
12	28	1.4e-06	0.00013	23.6	1.9	1	23	318	340	318	340	0.98
13	28	5.8e-09	5.5e-07	31.1	0.9	1	23	346	368	346	368	0.98
14	28	9.7e-06	0.00092	20.9	1.1	1	23	374	397	374	397	0.96
15	28	4.4e-05	0.0041	18.9	2.2	1	23	403	425	403	425	0.98
16	28	4.4e-05	0.0041	18.9	2.2	1	23	431	453	431	453	0.98
17	28	1.1e-07	1e-05	27.1	2.0	1	23	459	481	459	481	0.98
18	28	7.8e-07	7.4e-05	24.4	3.2	1	23	487	509	487	509	0.97
19	28	9.2e-07	8.7e-05	24.1	2.6	1	23	515	537	515	537	0.98
20	28	1.2e-07	1.1e-05	26.9	0.9	1	23	543	565	543	565	0.98
21	28	1.8e-07	1.7e-05	26.3	1.2	1	23	571	593	571	593	0.98
22	28	4.4e-05	0.0041	18.9	2.2	1	23	599	621	599	621	0.98
23	28	6.1e-08	5.7e-06	27.9	2.2	1	23	627	649	627	649	0.98
24	28	6.1e-08	5.8e-06	27.8	0.6	1	23	655	677	655	677	0.98
25	28	2.4e-07	2.2e-05	26.0	1.9	1	23	683	705	683	705	0.96
26	28	1.1e-06	0.0001	23.9	2.2	1	23	711	733	711	733	0.98
27	28	1.4e-08	1.3e-06	29.8	2.3	1	23	739	761	739	761	0.98
28	28	3.6e-05	0.0034	19.1	2.3	1	23	795	817	795	817	0.96

Sequence Information

Coding Sequence: ATGAGGATTCACATAGGAGAGAAACCATATTCATGTATACAATGTGACAAAGTATGCCATAAGAAAAGTAATTTAGTATGCCACATGAGGATTCACTCTGGAGACAAACCATATTCATGTTCAGAGTGTGACAAAGCATTTAATCAAATAGATCGTTTGGTCAACCACATGAGGATGCACACCAGAGAGAAACCATATTCATGCTCAGAAAGTGACAAAGCATTCAGTGAAAAAAGTCATTTGGTAAGACACATGAGGATTCACACAGGAGAGAAACCACATTCATGTTCAGAATGTGACAAAGCATTCAGTGATAAAAGTGCTTTGGTAAAACACAAGAGGATTCACACCAGAGACAAACCATATTCATGTTCAAAGTGTGACAAAGCGTTTAGTCAAAAAGGTACTTTGGCAAAACACATGAGGATTCACACAGGAGATAAACCATATTCATGTTCAGAATGTGACAAATCATTCAGAGTAAAAAGTAATTTGGTACGCCACATGAGGATTCACACTGGAGACAAACCATATTCATGTTCAAAGTGTGATAAAGCATTCAATCAAAAAGATAGTTTGGTAAACCACATGAGTATTCACACTGGAGACAAACTATATTCATGTTCAAAGTGTGACAAAGAATTTAATCAAAAAGATAGTTTGGTAAAGCACATGAAGATTCACGCAGGAGAGAAACCATATTCATGTTCAGAATGTGACAAAGCATTCAGTGTTAAAAGTAATTTTGTATGCCACATGAGGATTCACACAGGAGATAAACCATATTCATGTTCAGAATGTGACAAATCATTCAGGGAAAAAAGTCATTTGGTACGCCACATAAGGATTCACACAGGAGACAAACCATATTCATGTTCAAAGTGTGACAAAGCATTTAATCAAAAAGAAAGTTTGGTAAACCACATGAGGATTCACACTGGAGACAAACCATATTCATGTTCAAAGTGTGACAAAGCATTTAATCAAAAAAATTTTTTGGTAAAGCACATGAGGATTCACACAGGAGATAAACCATATTCATGTTCAGAATGTGACAAATCATTCAGGGATAAAAGTAATTTGGTACGCCACATGATGATTCACACTGGAGACAAACCATATTCATGTTCAAAGTGTGACAAAGCATTTAATCAAAAAGATAGTTTGGTAAAACACAATATGAGGATTCACACAGGAGAGAAACTATATTCATGTTCAGAATGTGACAAAGCATTCAGTGTTAAAAGTAATTTTGTATGCCACATGAGGATTCACACAGGAGAGAAACTATATTCATGTTCAGAATGTGACAAAGCATTCAGTGTTAAAAGTAATTTTGTATGCCACATGAGGATTCACACAGGAGACAAACCATATTCATGTTCAGAATGTGACAAATCATTCAGGGAAAAAGGTCATTTGGTACGCCACATGAGGATTCACACAGGAGACAAACCACATTCATGTTCAAAGTGTGACAAAGCATTTAATCAAAAATATAGTTTGGTAAAGCACATGAGGATTCACACAGGAGATAAACCATATTCATGTTCAGAATGTCACAAATCATTCAGAGAAAAAAGTAGTTTGGTACTCCACATGAGGATTCACACTGGAGACAAACCATATTCATGTTCAAAGTGTGATAAAGCATTCAATCAAAAAGGTAGTTTGGTAAAACACATGAGGATTCACACTGGAGACAAACCATATTCATGTTCAAAGTGTGACAAAGCATTTAATCAAAAAGATAGTTTGGTAAAGCACATGAAGATTCACACAGGAGAGAAACCATATTCATGTTCAGAATGTGACAAAGCATTCAGTGTTAAAAGTAATTTTGTATGCCACATGAGGATTCACACAGGAGACAAACCATATTCATGTTCAGAATGTGACAAAGCATTCCATAATAAAAGTAATTTGGTACGTCACATGAGGATTCACACTGAAAACAAACCATATTCATGTTTAGAATGTGACAAAGCATTCCGTAATAAAAGTCAGTTGGCAACACACATGAGGATTCACACAGGAGAGAAACTATATTTATGTTCAGAATGTGACAAAGCATTCCATAATAAAAGTAATTTGGTACGTCACATGAGGATTCACACTGGAGACAAACCATATTCATGTTCTGAGTGTGACAAAGCATTTAATCAAAAACATAGTTTGGTATACCACATGAGGATTCACACCAGAGAGAAACAATATTCATGTTCAGAATGTGACAAAGCATTCAGTCAAAAAAGTCATTTAGTAAAACACATGAGGATTCATACAGGAGAGAAGACAACTTCACCTTCAGAATATAACATGCCATTCAGTGACAGAAGTGCTTTTGTGAAATATCAGAGGAAACATAAATGGGGGAACCCGTATCTTTGTTTAGAGTGTGACAAAAGATTCCACCAAAAATCGAACTTGGCAGAACATTTAAAGTCACATGCAAGCAATGTACTTGTGTGGATATGGCTCGGATTTTAA
Protein Sequence: MRIHIGEKPYSCIQCDKVCHKKSNLVCHMRIHSGDKPYSCSECDKAFNQIDRLVNHMRMHTREKPYSCSESDKAFSEKSHLVRHMRIHTGEKPHSCSECDKAFSDKSALVKHKRIHTRDKPYSCSKCDKAFSQKGTLAKHMRIHTGDKPYSCSECDKSFRVKSNLVRHMRIHTGDKPYSCSKCDKAFNQKDSLVNHMSIHTGDKLYSCSKCDKEFNQKDSLVKHMKIHAGEKPYSCSECDKAFSVKSNFVCHMRIHTGDKPYSCSECDKSFREKSHLVRHIRIHTGDKPYSCSKCDKAFNQKESLVNHMRIHTGDKPYSCSKCDKAFNQKNFLVKHMRIHTGDKPYSCSECDKSFRDKSNLVRHMMIHTGDKPYSCSKCDKAFNQKDSLVKHNMRIHTGEKLYSCSECDKAFSVKSNFVCHMRIHTGEKLYSCSECDKAFSVKSNFVCHMRIHTGDKPYSCSECDKSFREKGHLVRHMRIHTGDKPHSCSKCDKAFNQKYSLVKHMRIHTGDKPYSCSECHKSFREKSSLVLHMRIHTGDKPYSCSKCDKAFNQKGSLVKHMRIHTGDKPYSCSKCDKAFNQKDSLVKHMKIHTGEKPYSCSECDKAFSVKSNFVCHMRIHTGDKPYSCSECDKAFHNKSNLVRHMRIHTENKPYSCLECDKAFRNKSQLATHMRIHTGEKLYLCSECDKAFHNKSNLVRHMRIHTGDKPYSCSECDKAFNQKHSLVYHMRIHTREKQYSCSECDKAFSQKSHLVKHMRIHTGEKTTSPSEYNMPFSDRSAFVKYQRKHKWGNPYLCLECDKRFHQKSNLAEHLKSHASNVLVWIWLGF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -