Cfla017297.1
Basic Information
- Insect
- Coleophora flavipennella
- Gene Symbol
- -
- Assembly
- GCA_947284805.1
- Location
- OX369253.1:5635903-5638749[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 32 5e-06 0.00047 21.8 0.6 1 23 22 44 22 44 0.96 2 32 2.1e-07 1.9e-05 26.2 1.0 1 23 50 72 50 72 0.98 3 32 6e-07 5.7e-05 24.7 1.4 1 23 78 100 78 100 0.98 4 32 3.7e-08 3.5e-06 28.5 1.6 1 23 106 128 106 128 0.98 5 32 8.1e-07 7.6e-05 24.3 0.3 1 23 134 156 134 156 0.98 6 32 3e-06 0.00028 22.5 0.9 1 23 162 184 162 184 0.98 7 32 8.6e-07 8.1e-05 24.2 1.2 1 23 190 212 190 212 0.96 8 32 1.2e-05 0.0012 20.6 1.5 1 23 218 240 218 240 0.99 9 32 6.1e-07 5.8e-05 24.7 0.9 1 23 246 268 246 268 0.98 10 32 2.9e-06 0.00027 22.6 0.5 1 23 274 296 274 296 0.98 11 32 0.2 19 7.3 0.1 7 23 308 324 302 324 0.88 12 32 4e-07 3.8e-05 25.3 2.4 1 23 330 352 330 352 0.98 13 32 1.9e-06 0.00018 23.1 2.7 1 23 358 380 358 380 0.98 14 32 8.6e-08 8.1e-06 27.4 1.5 1 23 386 408 386 408 0.98 15 32 4.4e-05 0.0041 18.9 3.2 1 23 414 436 414 436 0.98 16 32 4.3e-07 4e-05 25.2 1.6 1 23 442 464 442 464 0.98 17 32 5.2e-05 0.0049 18.6 0.3 1 23 470 492 470 492 0.98 18 32 4.5e-07 4.2e-05 25.1 2.0 1 23 498 520 498 520 0.98 19 32 2.7e-06 0.00026 22.6 0.3 1 23 526 548 526 548 0.98 20 32 4.1e-08 3.9e-06 28.4 1.7 1 23 554 576 554 576 0.98 21 32 2.8e-06 0.00027 22.6 0.3 1 23 582 604 582 604 0.98 22 32 3.7e-06 0.00035 22.2 3.8 1 23 610 632 610 632 0.98 23 32 2.5e-07 2.4e-05 25.9 0.3 1 23 638 660 638 660 0.98 24 32 0.0034 0.32 12.9 1.0 7 23 672 688 672 688 0.96 25 32 4.7e-05 0.0044 18.8 0.5 5 23 698 716 697 716 0.96 26 32 0.0056 0.53 12.2 0.2 1 19 722 740 722 742 0.96 27 32 4.3e-07 4e-05 25.2 1.1 1 23 750 772 750 772 0.96 28 32 0.00016 0.016 17.0 0.2 5 23 782 800 781 800 0.96 29 32 5e-07 4.7e-05 25.0 0.7 1 23 806 828 806 828 0.98 30 32 0.0028 0.26 13.2 0.3 1 17 834 850 834 851 0.93 31 32 0.00067 0.063 15.1 0.3 1 23 862 884 862 884 0.96 32 32 0.031 3 9.9 0.1 1 14 890 903 890 907 0.89
Sequence Information
- Coding Sequence
- ATGCAAAAAAGCCAGTCTACTATATTATTTGCTGACATAAGGAACCAGATGGGAGGGAAACCATATTTATGTTCAGAATGTGGCAAAGCATTGAGCCAAAAAGTACATTTGGTAAATCACATGAGAGTTCACACAAGAGAAAAACAATATTCATGTTCAGAATGCAACAAAGCATTTAGTAAAAAATATGCTTTGGTTAAACACATGAGGATTCACACAGGAGAGAAACCATACTCATGTTCAGAATGTGACAAACCATTCAGAGAAAAAGTACATTTGGTAAAACACATGAGGATTCACACAGGAGAGAAACCCTATTCATGTTCAGAATGTGACAAAGCATTCTCTCAAAAAGGACATTTGGTAAAACACATGAGGATTCACACTGGAGAGAAACCATACTCATGTTCAGAATGTGACAAAGCATTCACTGTAAAAGAAACTTTAGTAACACATATGAGGATTCACACAGGAGAGAAACCATATTCATGTTTAGAATGTGACAAAACATTCAGAGAAAAAAGACTTTTGGTACAACACATGAGGGTTCACACAGGAGTGAAACCATATTTATGTTCAGAATGTGACAAAGCATTCACTCAAACAGGACATTTGGTTAAACACATGAGGATCCACACAAGAGAGAAACCCTATTCATGTTCAGAATGTGATCAAACATTCGGTCTAAAAGTACATTTGGTAAATCACATGAGAACTCACACAGAAGAAAAACAATATTCATGTTCAGAATGCAACAAAGCATTCAGTCAAAAATATGTTTTGGTTAAACACATGAGGATTCACACAGGAGAAAAACCATATTCATGTTTAGAATGTGACAAAGCATTCACTCAAACAGGATATTTGGTTAAACACATGAAGATCCACACAAGAGAGAAACCCTATCCATGTTCAGAACGTGACAAAACATTGAAAGAAAAAGATAAATTAAGAGTGCACATGAGGATTCACACAGAAGAAAAACCATACTCATGTTCAGAATGTGACAAAACATTCAGAGAAAAAGTACATTTGGTAAAACACATGAGGATTCACACAGGAGAGAAACCATACTCATGTTCAGAATGTGACAAAACATTCAGAGAAAAACTACATTTGGTGAAACACATGAGGATTCACACAGGAGAGAAACCATACTCATGTTCAGAATGTGACAAAGCATTCACTCAAAAAGGACATTTGGTAACACACATGAGGATCCACACAGGAGTAAAACAGTATTCATGTTCAGAATGCAACAAAACATTCAGAGAAAAATGTGTTTTGGTTAAACACATGAGGATTCACACAGAAGAGAAACCATATTCATGTTCAGAATGTGACAAAACATTCAGAGAAAAAGATAAATTGAAATTGCACATGAGGATTCACACAGGAGAAAAACCATATTCATGTTTAGAATGTAACAAAGCTTTCAGTTTAAAAGTAAAATTGGAAGGGCACATGAGGATTCACACAGGAGAGAAACCATACTCATGTTCAGAATGTGACAAAACATTCAGAGAACAAGGACATTTGGTAAAACACATGAAGATTCACACAGGAGAGAAACCATACTCATGTTCAGAATGTGACAAAGCATTCTCTATAAAAGAAACTTTAGTAACACATATGAGGATTCACACAGGAGAGAAACCATACTCATGTTCAGAATGTGACAAAGCATTCACTCAAAAAGGACATTTGGTAAAACACATGAGGATTCACACAGGAGAGAAACCATACTCATGTTCAGAATGTGACAAAGCATTCACTATAAAAGAAACTTTAGTAACACATATGAGGATTCACACAGGAGAGAAACCATATTCATGTTCAGAATGTGACAAAGCATTCAGTCACAAATGTGCTTTGGTAAAACATATGAAAATTCACACAAGAGAAAAACCCTATCCATGTTCAGAATGTGACAAAACATTCAGAGAAAAAGGACTTTTGGTAAAACATATGAGGGTTCACACAGGAGTGAAACCATATTTATGTTTAGAATTTAACAAAGCATTCACTCAAAAAGCACATTTGGTTAAACACATGAGGATCCACACAAGAGAGAAACCTTATTTGCGTTCAGAATGTGACAAAGCATTCACTCAAACAGGACATTTGGTTAAACACATGAGGATCCACACAAGAGAGAAACCCTATTCATGTTCAGAATGTGATCAAACATTCGGTCAAAAAGGAAAATTGTTAGAGCACTCATGGATTCACACAGAAGAGAAACCTTATTTATGTTCAGAATGTGACAAAGCATTTAGCCAAAAAGTACATTTGGTAAATCACATGAGAATTCACACAGAAGAAAAACAATATTCATCTTCAGAATGCAACAAAGCATTCAGTCAAAAATATGTTTTGGTTAAACACATGAGGATTCACACAGGAGAGAAACCCTATCCATGTTCAGAATGTGAGAAAACATTCAGTCATAAAGGACTTTTGGCAGAGCACATGAGGATTCACACAGGAGAGAAATCATATTCATGTTCAGTATGTGAGAAAGCATTCACTCAAAAAGAACATTTGGTAAAACCCATGAGTATTCACACAGGAGAGAAATCATATTTGTGTTCAGAATGTGATAAATTATTCAGTGAAAAAGGAAAATTGGTTGATCACACGAGGATTCATACAGGAGAGAAACCCTATTCATGTTTGGAATGTGACAAAACATTCAGTGACAGAAGGGCTATTGTAAGACGTAATGAAGGCAAAATACCATACCTTTGTACAAAATTTGACAACCAATTTCATAATTTTGCCGCACATATGAAGACATATGCAGGCAGAAAACTTGCATGGATATGGCTCGGATTGAATAAATAA
- Protein Sequence
- MQKSQSTILFADIRNQMGGKPYLCSECGKALSQKVHLVNHMRVHTREKQYSCSECNKAFSKKYALVKHMRIHTGEKPYSCSECDKPFREKVHLVKHMRIHTGEKPYSCSECDKAFSQKGHLVKHMRIHTGEKPYSCSECDKAFTVKETLVTHMRIHTGEKPYSCLECDKTFREKRLLVQHMRVHTGVKPYLCSECDKAFTQTGHLVKHMRIHTREKPYSCSECDQTFGLKVHLVNHMRTHTEEKQYSCSECNKAFSQKYVLVKHMRIHTGEKPYSCLECDKAFTQTGYLVKHMKIHTREKPYPCSERDKTLKEKDKLRVHMRIHTEEKPYSCSECDKTFREKVHLVKHMRIHTGEKPYSCSECDKTFREKLHLVKHMRIHTGEKPYSCSECDKAFTQKGHLVTHMRIHTGVKQYSCSECNKTFREKCVLVKHMRIHTEEKPYSCSECDKTFREKDKLKLHMRIHTGEKPYSCLECNKAFSLKVKLEGHMRIHTGEKPYSCSECDKTFREQGHLVKHMKIHTGEKPYSCSECDKAFSIKETLVTHMRIHTGEKPYSCSECDKAFTQKGHLVKHMRIHTGEKPYSCSECDKAFTIKETLVTHMRIHTGEKPYSCSECDKAFSHKCALVKHMKIHTREKPYPCSECDKTFREKGLLVKHMRVHTGVKPYLCLEFNKAFTQKAHLVKHMRIHTREKPYLRSECDKAFTQTGHLVKHMRIHTREKPYSCSECDQTFGQKGKLLEHSWIHTEEKPYLCSECDKAFSQKVHLVNHMRIHTEEKQYSSSECNKAFSQKYVLVKHMRIHTGEKPYPCSECEKTFSHKGLLAEHMRIHTGEKSYSCSVCEKAFTQKEHLVKPMSIHTGEKSYLCSECDKLFSEKGKLVDHTRIHTGEKPYSCLECDKTFSDRRAIVRRNEGKIPYLCTKFDNQFHNFAAHMKTYAGRKLAWIWLGLNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -