Basic Information

Insect: Coleophora flavipennella
Gene Symbol: -
Assembly: GCA_947284805.1
Location: OX369262.1:14098873-14105104[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 32 0.27 25 6.9 1.0 10 23 2 15 1 15 0.94

2 32 5.2e-06 0.00049 21.8 1.7 1 23 21 43 21 43 0.98

3 32 6.3e-05 0.0059 18.4 0.5 1 23 49 71 49 71 0.98

4 32 1.1e-07 1.1e-05 27.0 0.3 1 23 77 99 77 99 0.98

5 32 3.4e-06 0.00032 22.4 0.2 1 23 105 127 105 127 0.98

6 32 1.4e-06 0.00013 23.5 1.8 1 23 133 155 133 155 0.98

7 32 5.6e-06 0.00053 21.7 1.6 1 23 161 183 161 183 0.98

8 32 4.6e-06 0.00043 21.9 1.5 1 23 189 211 189 211 0.98

9 32 1.6e-07 1.5e-05 26.5 2.1 1 23 217 239 217 239 0.98

10 32 0.00025 0.024 16.5 0.1 5 23 241 259 240 259 0.96

11 32 1.5e-07 1.4e-05 26.6 1.4 1 23 265 287 265 287 0.98

12 32 0.34 32 6.6 0.3 5 23 297 315 296 315 0.96

13 32 8e-06 0.00076 21.2 0.3 1 23 321 343 321 343 0.98

14 32 2.6e-07 2.4e-05 25.9 1.2 1 23 349 371 349 371 0.98

15 32 6.5e-08 6.1e-06 27.8 0.6 1 23 377 399 377 399 0.98

16 32 1.4e-07 1.3e-05 26.7 1.2 1 23 405 427 405 427 0.98

17 32 1.2e-08 1.2e-06 30.0 1.1 1 23 433 455 433 455 0.98

18 32 1.5e-05 0.0014 20.4 1.6 1 23 461 483 461 483 0.98

19 32 2.1e-07 2e-05 26.1 0.5 1 23 489 511 489 511 0.98

20 32 5.9e-07 5.5e-05 24.8 0.3 1 23 517 539 517 539 0.98

21 32 1.5e-07 1.4e-05 26.6 1.4 1 23 545 567 545 567 0.98

22 32 0.34 32 6.6 0.3 5 23 577 595 576 595 0.96

23 32 8e-06 0.00076 21.2 0.3 1 23 601 623 601 623 0.98

24 32 2.6e-07 2.4e-05 25.9 1.2 1 23 629 651 629 651 0.98

25 32 6.5e-08 6.1e-06 27.8 0.6 1 23 657 679 657 679 0.98

26 32 1.4e-07 1.3e-05 26.7 1.2 1 23 685 707 685 707 0.98

27 32 1.2e-08 1.2e-06 30.0 1.1 1 23 713 735 713 735 0.98

28 32 1.5e-05 0.0014 20.4 1.6 1 23 741 763 741 763 0.98

29 32 2.1e-07 2e-05 26.1 0.5 1 23 769 791 769 791 0.98

30 32 2.3e-06 0.00022 22.9 1.1 1 23 797 819 797 819 0.98

31 32 1.4e-05 0.0013 20.4 1.0 3 21 827 845 825 846 0.93

32 32 1.1e-06 0.0001 23.9 0.5 1 23 853 875 853 875 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	32	0.27	25	6.9	1.0	10	23	2	15	1	15	0.94
2	32	5.2e-06	0.00049	21.8	1.7	1	23	21	43	21	43	0.98
3	32	6.3e-05	0.0059	18.4	0.5	1	23	49	71	49	71	0.98
4	32	1.1e-07	1.1e-05	27.0	0.3	1	23	77	99	77	99	0.98
5	32	3.4e-06	0.00032	22.4	0.2	1	23	105	127	105	127	0.98
6	32	1.4e-06	0.00013	23.5	1.8	1	23	133	155	133	155	0.98
7	32	5.6e-06	0.00053	21.7	1.6	1	23	161	183	161	183	0.98
8	32	4.6e-06	0.00043	21.9	1.5	1	23	189	211	189	211	0.98
9	32	1.6e-07	1.5e-05	26.5	2.1	1	23	217	239	217	239	0.98
10	32	0.00025	0.024	16.5	0.1	5	23	241	259	240	259	0.96
11	32	1.5e-07	1.4e-05	26.6	1.4	1	23	265	287	265	287	0.98
12	32	0.34	32	6.6	0.3	5	23	297	315	296	315	0.96
13	32	8e-06	0.00076	21.2	0.3	1	23	321	343	321	343	0.98
14	32	2.6e-07	2.4e-05	25.9	1.2	1	23	349	371	349	371	0.98
15	32	6.5e-08	6.1e-06	27.8	0.6	1	23	377	399	377	399	0.98
16	32	1.4e-07	1.3e-05	26.7	1.2	1	23	405	427	405	427	0.98
17	32	1.2e-08	1.2e-06	30.0	1.1	1	23	433	455	433	455	0.98
18	32	1.5e-05	0.0014	20.4	1.6	1	23	461	483	461	483	0.98
19	32	2.1e-07	2e-05	26.1	0.5	1	23	489	511	489	511	0.98
20	32	5.9e-07	5.5e-05	24.8	0.3	1	23	517	539	517	539	0.98
21	32	1.5e-07	1.4e-05	26.6	1.4	1	23	545	567	545	567	0.98
22	32	0.34	32	6.6	0.3	5	23	577	595	576	595	0.96
23	32	8e-06	0.00076	21.2	0.3	1	23	601	623	601	623	0.98
24	32	2.6e-07	2.4e-05	25.9	1.2	1	23	629	651	629	651	0.98
25	32	6.5e-08	6.1e-06	27.8	0.6	1	23	657	679	657	679	0.98
26	32	1.4e-07	1.3e-05	26.7	1.2	1	23	685	707	685	707	0.98
27	32	1.2e-08	1.2e-06	30.0	1.1	1	23	713	735	713	735	0.98
28	32	1.5e-05	0.0014	20.4	1.6	1	23	741	763	741	763	0.98
29	32	2.1e-07	2e-05	26.1	0.5	1	23	769	791	769	791	0.98
30	32	2.3e-06	0.00022	22.9	1.1	1	23	797	819	797	819	0.98
31	32	1.4e-05	0.0013	20.4	1.0	3	21	827	845	825	846	0.93
32	32	1.1e-06	0.0001	23.9	0.5	1	23	853	875	853	875	0.98

Sequence Information

Coding Sequence: ATGTTCATTCACAAAGGGACTTTGAGAAGCCACATGAGGATTCACACAGGTGAGAAACTATACTCATGTTCAGAATGTGACAAAACATTCAATAAAAAAAAATACTTGGTACTTCACTTGAGGATTCACACAGGAGAGAAACCATATTCATGTTCAAAATGTGATAAAGCGTTCAGATTAAAAGGTATATTGGTACGCCACATGAGGATTCACACAGGTGAGAAACCATATTCATGTTCAGAATGTGATAAAGCATTCAGTGACAAAGGGACTTTGGTAAATCACATGAGGATTCACACAGGTGAGAAACCATATTCATGTACAGAATGTGACAAAGCATTCAGTGCAAAAGGGACTTTGGTAAACCACATGAAGATTCACACAGGTGAGAAACCATACTCATGTTCAGAATGTGACAAAGCATTTAGTGTAAAACATAGTTTGGTAAATCACATGAGGAATCACACAGATGAGAAACCATATTCATGTACAGAATGTGACAAAGCATTTACTGCAAAACATACTTTGGTAAATCACATGAAAATTCACACAGATGAGAAACAATATTCATGTACAGAATGTGACAAAGCGTTCAGAGAGAAATGTAGTTTGGTAATCCACATGAGGATTCACACAGGTGAGAAACCATACTCATGTTCAGAATGTGACAAAGTGTTCAGTCATAAAACGTCTTTGGTAAACCACATGAGGATTCACACAGAATGTGACAAAGCATTCAGTGAAAAAGGGACTTTGGTAAACCACATGAGGATTCACACAGGTGAGAAACCATACTCATGTTCAGAATGTGACAAAGTGTTTACTCATAGAGGGTCTTTGGTAAACCATATGAGGATTCATACAGGAGAGGAACCATACTCAGGTTCAGAATGTGACAAAGTGTTATTTCACAAAGGGACTTTGGGAAGCCACGTGAGGATTCACACAGGTGAAAAACCATATTCATGTTCAGAATGTGACAAAGCATTCAGTAAAGAAGGGAATTTGGTAAACCACAATAGAATTCACACATGTGAGAAACCATTTTCATGTTCAGAATGCGACAAAACATTCAGTCAAAAAGGGAATTTGGTAAACCACAAGAGAATTCACACATGTGAGAAACCATATTCATGTTCAGAATGCGACAAAACATTCAGTCAAAAAGGTAATTTGATAACTCACATGAGCATTCACACAGGAGGGAAATCATATTCATGTTCAGAATGTGACAAAGTGTTCAGGCAAAAAAGGACTTTGGTAAACCATATGAGGATTCACACAGATGAGAAACCATATTCATGTACAGAATGTGACAAAGCGTTCAGTAAAAAAAGTAATTTGGTGAAACACATGAGGATTCACACAGGTGAGAAATCATATTCATGTTCAGAATGTGACAAAGTGTTCTTTCACAAAGGGACTTTGGGAAGACACGTGAGGATTCACACAGGTGAAAAACCATATTCATGTTCAGAATGTGACAAAGCATTCAATAAAAAAGGGAATTTGGTAAGCCACATGAGAATTCACACAGGAGGGAAACCATATTCATGTACAGAATGTGACAAAGCATTCAGTGAAAAAGGGACTTTGGTAAACCACATGAGGATTCACACAGGTGAGAAACCATACTCATGTTCAGAATGTGACAAAGTGTTTACTCATAGAGGGTCTTTGGTAAACCATATGAGGATTCATACAGGAGAGGAACCATACTCAGGTTCAGAATGTGACAAAGTGTTATTTCACAAAGGGACTTTGGGAAGCCACGTGAGGATTCACACAGGTGAAAAACCATATTCATGTTCAGAATGTGACAAAGCATTCAGTAAAGAAGGGAATTTGGTAAACCACAATAGAATTCACACATGTGAGAAACCATTTTCATGTTCAGAATGCGACAAAACATTCAGTCAAAAAGGGAATTTGGTAAACCACAAGAGAATACACACATGTGAGAAACCATATTCATGTTCAGAATGCGACAAAACATTCAGTCAAAAAGGTAATTTGATAACTCACATGAGCATTCACACAGGAGGGAAATCATATTCATGTTCAGAATGTGACAAAGTGTTCAGGCAAAAAAGGACTTTGGTAAACCATATGAGGATTCACACAGATGAGAAACCATATTCATGTACAGAATGTGACAAAGCGTTCAGTAAAAAAAGTAATTTGGTGAAACACATGAGGATTCACACAGGTGAGAAATCATATTCATGTTCAGAATGTGACAAAGTGTTCTTTCACAAAGGGACTTTGGGAAGACACGTGAGGATTCACACAGGTGAAAAACCATATTCATGTTCAGAATGTGACAAAGCATTCAATAAAAAAGGGAATTTGGTAAGCCACATGAGAATTCACACAGGAGAGAAACCATATTCATGTTTAGAATGTGACAAAGTGTTCAGCCACAAAGGGACTTTGGGCAGCCACATGAGGATTCACACAGGAGAGAAACCACATTTATGTTCAGAATGTGACAAAGTGTTTAGTAATAAACATGATTTGGTAAGTCACATGAAGATTTACACAGGAGAGAAACCATATTCATGTTCAGAATGTGATAAAGCTTTCAGTGAAAAAAGAAGTTTGGTAAAACACATGATGATTCACACAGATCGACTAAAGCCCGGCCGGCGGCTGCATCAAAGATGGAATATTCCATCTGGCCGAGACCAGTGCCCTCCGAGTGAGGTCATTAAGGAATTGGTGACGTGGGAATCTTCACAAACACGACTGCAACTCAGTGAGTGA
Protein Sequence: MFIHKGTLRSHMRIHTGEKLYSCSECDKTFNKKKYLVLHLRIHTGEKPYSCSKCDKAFRLKGILVRHMRIHTGEKPYSCSECDKAFSDKGTLVNHMRIHTGEKPYSCTECDKAFSAKGTLVNHMKIHTGEKPYSCSECDKAFSVKHSLVNHMRNHTDEKPYSCTECDKAFTAKHTLVNHMKIHTDEKQYSCTECDKAFREKCSLVIHMRIHTGEKPYSCSECDKVFSHKTSLVNHMRIHTECDKAFSEKGTLVNHMRIHTGEKPYSCSECDKVFTHRGSLVNHMRIHTGEEPYSGSECDKVLFHKGTLGSHVRIHTGEKPYSCSECDKAFSKEGNLVNHNRIHTCEKPFSCSECDKTFSQKGNLVNHKRIHTCEKPYSCSECDKTFSQKGNLITHMSIHTGGKSYSCSECDKVFRQKRTLVNHMRIHTDEKPYSCTECDKAFSKKSNLVKHMRIHTGEKSYSCSECDKVFFHKGTLGRHVRIHTGEKPYSCSECDKAFNKKGNLVSHMRIHTGGKPYSCTECDKAFSEKGTLVNHMRIHTGEKPYSCSECDKVFTHRGSLVNHMRIHTGEEPYSGSECDKVLFHKGTLGSHVRIHTGEKPYSCSECDKAFSKEGNLVNHNRIHTCEKPFSCSECDKTFSQKGNLVNHKRIHTCEKPYSCSECDKTFSQKGNLITHMSIHTGGKSYSCSECDKVFRQKRTLVNHMRIHTDEKPYSCTECDKAFSKKSNLVKHMRIHTGEKSYSCSECDKVFFHKGTLGRHVRIHTGEKPYSCSECDKAFNKKGNLVSHMRIHTGEKPYSCLECDKVFSHKGTLGSHMRIHTGEKPHLCSECDKVFSNKHDLVSHMKIYTGEKPYSCSECDKAFSEKRSLVKHMMIHTDRLKPGRRLHQRWNIPSGRDQCPPSEVIKELVTWESSQTRLQLSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -