Cfla047448.1
Basic Information
- Insect
- Coleophora flavipennella
- Gene Symbol
- -
- Assembly
- GCA_947284805.1
- Location
- OX369262.1:13534846-13537989[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 37 4.1e-07 3.8e-05 25.3 0.3 1 23 10 32 10 32 0.98 2 37 5.5e-06 0.00052 21.7 0.2 1 23 38 60 38 60 0.95 3 37 8.5e-06 0.0008 21.1 0.8 1 23 67 89 67 89 0.96 4 37 7.1e-06 0.00067 21.3 1.3 1 23 95 117 95 117 0.98 5 37 1.9e-06 0.00018 23.1 1.1 1 23 123 145 123 145 0.98 6 37 3.1e-07 2.9e-05 25.6 0.3 1 23 151 173 151 173 0.98 7 37 2.6e-08 2.4e-06 29.0 2.0 1 23 179 201 179 201 0.98 8 37 3.3e-06 0.00031 22.4 0.2 1 23 207 229 207 229 0.95 9 37 6.8e-06 0.00064 21.4 0.6 1 23 236 258 236 258 0.96 10 37 1.9e-06 0.00018 23.1 1.1 1 23 264 286 264 286 0.98 11 37 1.4e-07 1.3e-05 26.7 0.3 1 23 292 314 292 314 0.98 12 37 2.6e-08 2.4e-06 29.0 2.0 1 23 320 342 320 342 0.98 13 37 5.5e-06 0.00052 21.7 0.2 1 23 348 370 348 370 0.95 14 37 6.8e-06 0.00064 21.4 0.6 1 23 377 399 377 399 0.96 15 37 6.8e-06 0.00064 21.4 0.6 1 23 406 428 406 428 0.96 16 37 1.6e-06 0.00015 23.4 1.3 1 23 434 456 434 456 0.98 17 37 3.6e-05 0.0034 19.1 1.0 1 23 462 484 462 484 0.98 18 37 0.00011 0.01 17.6 5.3 1 23 490 512 490 512 0.98 19 37 1.7e-06 0.00016 23.3 0.7 1 23 518 540 518 540 0.98 20 37 2.8e-06 0.00026 22.6 2.8 1 23 546 568 546 568 0.98 21 37 1.1e-06 0.00011 23.8 0.4 1 23 574 596 574 596 0.98 22 37 1.8e-07 1.7e-05 26.4 1.5 1 23 602 624 602 624 0.98 23 37 1.1e-05 0.0011 20.7 0.2 1 23 630 652 630 652 0.95 24 37 2.7e-05 0.0026 19.5 0.5 1 23 658 680 658 680 0.98 25 37 2.5e-07 2.4e-05 25.9 0.8 1 23 686 708 686 708 0.98 26 37 5.3e-06 0.0005 21.7 1.0 1 23 714 736 714 736 0.98 27 37 1.6e-06 0.00015 23.4 0.7 1 23 742 764 742 764 0.96 28 37 2.5e-08 2.4e-06 29.0 0.8 1 23 770 792 770 792 0.98 29 37 2.4e-05 0.0023 19.7 1.2 1 23 798 820 798 820 0.96 30 37 2.5e-05 0.0024 19.6 0.3 1 23 826 848 826 848 0.98 31 37 9.9e-07 9.3e-05 24.0 1.9 1 23 854 876 854 876 0.96 32 37 1.9e-05 0.0018 20.0 1.2 1 23 882 904 882 904 0.98 33 37 3.6e-07 3.4e-05 25.4 0.8 1 23 910 932 910 932 0.98 34 37 6.9e-07 6.5e-05 24.5 1.2 1 23 938 960 938 960 0.98 35 37 0.017 1.7 10.7 0.1 5 20 968 983 967 985 0.93 36 37 1.2 1.1e+02 4.9 0.8 10 23 997 1010 994 1010 0.94 37 37 0.00058 0.055 15.3 0.3 5 23 1017 1035 1015 1035 0.96
Sequence Information
- Coding Sequence
- ATGAGCATTCACACAGGAAAGAAACCATATTCGTGTTCAGAATGTGACAAAGTTTTCAGTAAAAAAGGTGGTTTAGTAACACACATGAGAATACACACAGAAGAGAAACCATTTTTGTGTTCAGAATGTGACAAAGCATACAGTGAAAAAGGTAATTTGGTACAACACATGAGGATTCACACAGGAGAGAAACCACCATATTTGTGTTCAGAATGTGACAAAGCATACAGAGTAAAAGGTCATTTGGTACAACACATGAGGATTCACACAGGAGAGAAACCATATTCATGTTCAGATTGTGACAAAGAATTCAGTGTAAAAGGTCGTTTGGTACACCACATGAGGATTCACACAGGAGAGAAAACATATTCATGTTCAGAATGTGACAAAGTGTTCAGTGTAAAAGGTCATTTGGTACAACACACGAGGATTCACACAGGAGAGAAAACATATTCATGTTCAGAATGTGACAAAGTTTTCAATGAAAAAGGTAGTTTGGTAAGACACATGAGGATTCACACAGAAGAAAAAACATATTCATGTTCAGAATGCGATAAAACGTTCAGTCAAAAAGGTCATTTGATAAGGCACATTAGAATTCACACAGGAGAGAAACCATTTTTGTGTTCAGAATGTGACAAAGTATACAGTGAAAAAGGTAATTTGGTACAACACATGAGGATTCACACAGGAGAGAAACCACCATATTTGTGTTCAGAATGTGACAAAGCATACAGTGTAAAAGGTCATTTGGTACAACACATGAGGATTCACACAGGAGAGAAAACATATTCATGTTCAGAATGTGACAAAGTGTTCAGTGTAAAAGGTCATTTGGTACAACACACGAGGATTCACACAAGAGAGAAAACATATTCATGTTCAGAATGTGACAAAGTTTTCAGTGAAAAAGGTAGTTTGGTAAGACACATGAGGATTCACACAGAAGAAAAAACATATTCATGTTCAGAATGCGATAAAACGTTCAGTCAAAAAGGTCATTTGATAAGGCACATTAGAATTCACACAGGAGAGAAACCATTTTTGTGTTCAGAATGTGACAAAGCATACAGTGAAAAAGGTAATTTGGTACAACACATGAGGATTCACACAGGAGAGAAACCACCATATTTGTGTTCAGAATGTGACAAAGCATACAGTGTAAAAGGTCATTTGGTACAACACATGAGGATTCACACAGGAGAGAAACCACCATATTTGTGTTCAGAATGTGACAAAGCATACAGTGTAAAAGGTCATTTGGTACAACACATGAGGATTCACACAGGAGAGAAACCATATTCATGTTCAGAATGTGACAAAGAATTCAGTGTAACAGGTCATTTGCTACGACACATGAGGATTCACACAGGAGAAAAACCATATTCATGTACGAAATGTGACAAAAAGTTCAGCGAAAAGGGTATTTTGGTAAGACACATGAGAATTCACACAGGAGAGAAACCATTTATGTGTTCAGAATGTGACAAAGCATTCCATCAAAAAAGTTGTTTGGTAAGACACAAGAGGATTCACACAGGAGAGAAACCATATTCATGTACAAAATGTGACAAAGCGTTCAGTGAAAAAGGTAATTTGGTGTATCACATGAAGATTCACACAGGAGAGAAACCATATTCATGTTCAAAATGCGAAAAAGCATTCAGTGTAAAACGTCATTTGGTAAAACACATGAGGATTCACACTGGAGAGAAACCATATTCATGTTCAGAATGTGACAAAGACTTCAGTGAAAAAGTTAGTTTGGTAAGACACATGAGGATTCACACAGAAGAAAAACCATATTCATGTTCAGAATGCGACAAAACATTCATTCAAAAAGGTCATTTGGTAAGTCACATGAGAATTCACACAGGAGAGAAACCATTTTTGTGTTCAGAATGTGACAAAGCATACAGTGTAAAAGGTAATTTGGTACAACACATGAAGATTCACTCAGGAAAAAAACTATATTCATGTTCAGAATGTGACAAAAAGTTCAGTGAAAAAGGTATTTTGGTAAGACACATGAGGATTCACACAGGAGAGAAACCATATTCATGTTCAGAATGTAACAAAGCATTCAGTGTAAAATATAATTTAGAACAACACATGAAGATTCACACAGGAGAGAAACCATATTCATGTTTAGAATGTGACAAAGCATTCAGTGTAAGACATAATTTAGTACAACACCTGAGGATTCACACAGGCGAGAAACCATATTTGTGTTCAGAATGTGACAAAGCATTCAGTGTAAAAGGTCATTTGGTACAACATATGAGGATTCACACAGGAGAAAAACCATATTCATGTTCAGAATGTAACAAAGTGTTCAGTGAAAAAAGTAATTTGGTAAGACACATGAGGATTCACACAGGAGAAAAACCATATTTGTGTTCAAAATGTGACAAAGCATACAGTGTAAAAGGTCATTTGGTACAACACATGAAGATTCACTCAGGAGAAAAACCATATTCATGTTCAGAATGTGACAAAATGTTCAGTGAAAAAGGTATTTTGGTAAGACACATGAGAATTCACACAGGAGATAAACCATATTTATGTTCAGAATGCGACAAAGCATTTCATCAAAAAAGTAGTTTGGTAAGACACATGAGGATTCACACGGGAGAGAAACCATATTCATGTACAAAATGTAACAAAGCATTCAGTGAAAAAGGTAAATTGGTGTATCACATGAAGATTCACACAGGGGAGAAACCATATTCATGTTCAGAATGTGACAAAGCATTCAGTGTAAAAGGTCATTTGGTACAACACATGAGGATTCACACAGGAGAGAAACCATATTCATGTTCAGAATGTGACAGAGCATTCAGTGTAAAAAGTCATTTGGTACGACACATGAGCATTCACACAGGAGAGAAATCATATTCAGAATGTGGTAAAGCATTCTGTAAAAAAGGTAGTTTGGTGAATCACATAGGGAAGAAACTGTTATCATGTTCGGAATATAATATGCTCTTTAGTGTTAGAAGTGCTTTTATGAGACATCAGAGGAAACATAAAAGGGAAAACCCTTATCTATGTGACAAACAATTTGACCATAAATCTTACTTGGCAGCACACTTAAAGACACATGCAAGCGATGAACTTGCATGGATATGGCTCGGATTTTAA
- Protein Sequence
- MSIHTGKKPYSCSECDKVFSKKGGLVTHMRIHTEEKPFLCSECDKAYSEKGNLVQHMRIHTGEKPPYLCSECDKAYRVKGHLVQHMRIHTGEKPYSCSDCDKEFSVKGRLVHHMRIHTGEKTYSCSECDKVFSVKGHLVQHTRIHTGEKTYSCSECDKVFNEKGSLVRHMRIHTEEKTYSCSECDKTFSQKGHLIRHIRIHTGEKPFLCSECDKVYSEKGNLVQHMRIHTGEKPPYLCSECDKAYSVKGHLVQHMRIHTGEKTYSCSECDKVFSVKGHLVQHTRIHTREKTYSCSECDKVFSEKGSLVRHMRIHTEEKTYSCSECDKTFSQKGHLIRHIRIHTGEKPFLCSECDKAYSEKGNLVQHMRIHTGEKPPYLCSECDKAYSVKGHLVQHMRIHTGEKPPYLCSECDKAYSVKGHLVQHMRIHTGEKPYSCSECDKEFSVTGHLLRHMRIHTGEKPYSCTKCDKKFSEKGILVRHMRIHTGEKPFMCSECDKAFHQKSCLVRHKRIHTGEKPYSCTKCDKAFSEKGNLVYHMKIHTGEKPYSCSKCEKAFSVKRHLVKHMRIHTGEKPYSCSECDKDFSEKVSLVRHMRIHTEEKPYSCSECDKTFIQKGHLVSHMRIHTGEKPFLCSECDKAYSVKGNLVQHMKIHSGKKLYSCSECDKKFSEKGILVRHMRIHTGEKPYSCSECNKAFSVKYNLEQHMKIHTGEKPYSCLECDKAFSVRHNLVQHLRIHTGEKPYLCSECDKAFSVKGHLVQHMRIHTGEKPYSCSECNKVFSEKSNLVRHMRIHTGEKPYLCSKCDKAYSVKGHLVQHMKIHSGEKPYSCSECDKMFSEKGILVRHMRIHTGDKPYLCSECDKAFHQKSSLVRHMRIHTGEKPYSCTKCNKAFSEKGKLVYHMKIHTGEKPYSCSECDKAFSVKGHLVQHMRIHTGEKPYSCSECDRAFSVKSHLVRHMSIHTGEKSYSECGKAFCKKGSLVNHIGKKLLSCSEYNMLFSVRSAFMRHQRKHKRENPYLCDKQFDHKSYLAAHLKTHASDELAWIWLGF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -