Cfla038111.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Coleophora flavipennella
Gene Symbol
-
Assembly
GCA_947284805.1
Location
OX369299.1:12541832-12545410[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 40 4.4e-07 4.1e-05 25.1 1.1 1 23 10 32 10 32 0.99
2 40 4.3e-05 0.004 18.9 0.7 1 23 38 60 38 60 0.98
3 40 7e-07 6.6e-05 24.5 3.9 1 23 66 88 66 88 0.98
4 40 2e-08 1.9e-06 29.3 0.4 1 23 94 116 94 116 0.98
5 40 3.4e-07 3.2e-05 25.5 1.1 1 23 122 144 122 144 0.98
6 40 3.5e-07 3.3e-05 25.4 1.8 1 23 150 172 150 172 0.96
7 40 2.3e-06 0.00022 22.9 3.6 1 23 178 200 178 200 0.98
8 40 1.1e-06 0.0001 23.9 1.4 1 23 206 228 206 228 0.99
9 40 1.4e-07 1.3e-05 26.7 0.3 1 23 234 256 234 256 0.98
10 40 3.4e-07 3.2e-05 25.5 1.1 1 23 262 284 262 284 0.98
11 40 3.2e-07 3e-05 25.6 1.7 1 23 290 312 290 312 0.96
12 40 5.8e-05 0.0055 18.5 0.7 1 23 318 340 318 340 0.98
13 40 4.1e-07 3.9e-05 25.2 0.5 1 23 346 368 346 368 0.99
14 40 7e-07 6.6e-05 24.5 3.9 1 23 374 396 374 396 0.98
15 40 4.4e-07 4.1e-05 25.1 1.1 1 23 402 424 402 424 0.99
16 40 4.3e-05 0.004 18.9 0.7 1 23 430 452 430 452 0.98
17 40 4.4e-06 0.00042 22.0 0.5 1 23 458 480 458 480 0.98
18 40 5.6e-07 5.3e-05 24.8 2.8 1 23 486 508 486 508 0.98
19 40 3.1e-07 3e-05 25.6 0.2 1 23 513 535 513 535 0.99
20 40 1.5e-06 0.00014 23.5 0.3 1 23 541 563 541 563 0.99
21 40 6.8e-06 0.00064 21.4 0.4 1 23 569 591 569 591 0.98
22 40 4.1e-06 0.00039 22.1 0.5 1 23 597 619 597 619 0.98
23 40 8e-07 7.6e-05 24.3 0.7 1 23 625 647 625 647 0.98
24 40 8.3e-06 0.00078 21.1 0.5 1 23 653 675 653 675 0.98
25 40 1.8e-07 1.7e-05 26.3 0.9 1 23 681 703 681 703 0.98
26 40 4.5e-07 4.3e-05 25.1 0.2 1 23 709 731 709 731 0.98
27 40 9.6e-08 9e-06 27.2 3.1 1 23 737 759 737 759 0.98
28 40 7.4e-06 0.0007 21.3 1.9 1 23 765 787 765 787 0.96
29 40 1.1e-07 9.9e-06 27.1 0.7 1 23 793 815 793 815 0.98
30 40 3.7e-07 3.5e-05 25.4 0.6 1 23 821 843 821 843 0.98
31 40 3.4e-06 0.00032 22.3 2.3 1 23 849 871 849 871 0.99
32 40 5.5e-07 5.2e-05 24.8 0.3 1 23 877 899 877 899 0.98
33 40 2.3e-05 0.0022 19.7 2.4 1 23 905 927 905 927 0.98
34 40 8.1e-06 0.00076 21.2 0.4 1 23 933 955 933 955 0.96
35 40 7.5e-06 0.00071 21.3 1.7 1 23 961 983 961 983 0.99
36 40 8.7e-08 8.2e-06 27.4 2.5 1 23 989 1011 989 1011 0.99
37 40 2.4e-06 0.00023 22.8 0.9 1 23 1017 1040 1017 1040 0.96
38 40 5.3e-06 0.0005 21.8 0.8 1 23 1046 1068 1046 1068 0.98
39 40 2.2e-06 0.00021 23.0 1.4 1 23 1074 1096 1074 1096 0.98
40 40 0.0054 0.51 12.3 2.4 3 23 1159 1180 1157 1180 0.94

Sequence Information

Coding Sequence
ATGAGGATTCACACAGGAGAGAAACCATATTCATGTTCAGAATGTGACAAAGCATTCAGTGAAAAAAGTCGTTTGGTAAAACACATGAGGACTCACACAGGAGAGAAACCATTTTCATGTTTAGAATGTAACAAAGCATTCAGTGAAGAAAGTCGTTTGGTAAAACACATGAGGAATCACACAGGATTAAAACCATATTCATGTTCAGAATGTGACAAAACATTTAGTCAAAATTCTTGTTTTGTAAGACACATGAGGATTCACACCGGAGAGAAACCATATTCATGTTCAGAATGTGGCAAAGCATTCAGTGATAAATCTTCTTTGGTAACACACATGAGGATTCATACAGGAGAGAAACCATATCCATGTTTAGATTGTGACAAAAAATTCAGAAAAAAAGGTAATTTGAAAATACACATGAGGTTGCACACAGGAGAGAAACCATATTTATGTACAGAATGTGACAAAGCATTCACTACAAAACATTCTTTGGCAATACACATGAGGACTCACACAGGAGAAAAACCATATTCATGTTCAGAATGTGACAAATCATTTAGTGAAAAATCTTGTTTTGTAAGACACATGAGGATTCACACAGGAGAGAAACCATATTCATGTTCAGAATGTGACAAAGCATTCAGTGAAAACAGTTGTTTGGTAATACACATGAGGACTCACACAGGAGAGAAACCATATTCATGTTCAGAATGTGGCAAAGCATTCAGTGGTAAATCTTCTTTGGTAACACACATGAGGATTCACACAGGAGAGAAACCATATCCATGTTTAGATTGTGACAAAAAATTCAGGAAAAAAGGTAATTTGAAAATACACATGAGGTTGCACACAGGAGAGAAACCATATTTATGTACAGAATGTGACAAAGCATTCAGTACAAAACATTCTTTGGCAATACACATGAGGACTCACACAGGAGAAAAACCATATTCATGTTCAGAATGTGACAAATCATTTAGTGAAAAATTTTATTTGGTACCACACATGAGGATTCACACAGGAGAGAAACCATATTCATGTTCAGAATGTGACAAAGCATTCAGTGAAAAAAGTGGTTTGGTAAAACACCTGAGGACTCACACAGGAGATAAACCATATTCATGTTCAGAATGTGACAAAACATTCAGTCAAAATTCTTGTTTTGTAAGACACATGAGGATTCACACAGGAGAGAAACCATATTCATGTTCAGAATGTGACAAAGCATTCAGTGAAAAAAGTCGTTTGGTAAAACACATGAGGACTCACACAGGAGAGAAACCATTTTCATGTTTAGAATGTAACAAAGCATTCAGTGAAGAAAGTCGTTTGGTAAAACACATGAGGAATCACACAGGATTAAAACCATATTCATGTTCAGAATGTGACAAAGCATTCAATTATAAATCTTCTTTGGTAACACACATCACGATTCACACAGGAGAGAAACCATATTCATGTTTAGATTGTGAAAAAACATTCAGAAAAAAAGGCCATTTGATAAGACACATGAGGATTCACACAGGAGAGAAATATTCATGTTCAGAATGTGACAAAGCATTCAGTGAAAAAAGTGGTTTGGTAATACACATGAGGACTCACACAGGAGAGAAACCATATTCATGTTCAGAATGTGACAAGGCATTCAGTGAAAAAAATGGTTTGGTAATACACATGAGGACTCACACAGGAGAGAAACCATATTCATGTACAGAATGTGACAGAGCATTCAGTGAAAAATCTTCTGTGGTAACACACATGAGGATTCATACAGGAGATAGACCATATTCATGTTCAGGATGTGACAAAGCATTCAGTGAAAAAAGTCGTTTGGTAAATCACATAAGGAGTCACACAGGAGATAAACCATATTCATGTTCAGAATGTGACAAAGCTTTTAGTGTAAAACGTTATTTGTTTGCACACATGAGGATTCACACTGGAGAGAAACCATTTTCATGTTCAGAATGTGACAAAGCATTCATTGAAAAAAGTCGTTTGGTAAAACACATGAAGATTCACACAGGAGAGAAACCATTTTCATGTTCAGAATGTGACAAATCATTCAGTGAAAAATCTTCTTTGGTAACACACATGAGGATTCACACAGGAGAGAAACCATATGCATGTTCAGAATGTGACAAAGCATTTAGTGAAAAAAGTGGTTTGGTAACACACATGAGGACTCACACAGGAGAGAAACCATATTCATGTTTAGATTGTGACAAAACATTCAGAAGAAAAGGTCATTTGATAAGACACATGAGGTTGCACACAGGAGAGAAACCATATTTATGTTCAGAATGTGTCAAAGCATTCAGTACAAAACATTCTTTGTTAATACACATGAGGACTCACACAGGAGAGAAACCATATTCATGTTCAACGTGTGACAAAGCATTCAGTGATAAATCTTCTTTGGTAACACACATGAGGATTCACACAGGTGAGAAACCATATTCATGTTCAGAATGTGACAAAGCATTTAGTGAAAAATCTTATTTGGTAACGCACATGAGGATTCACACAGGAGAGAAACCATATTCATGTTCAAAATGTGACAAAGCATTCAGTGAAAAAAAACGTTTGGTAAAACACATGAGGACTCACACAGGAGATAAACCATATTCATGTTCAGAATGTGACAAAGCTTTCAGTGTAAAAGGTTATCTGTTTGCACACATGAGGATTCACACAGGAGAGAAACCATATTCATGTTCAGAATGTGACAAAGCATTCAGTGAAAAATGTCGTTTGGTCAAACACATGAGGATTCACACAGGAGAGCAACCATATTTATGTTCAGAATGTGACAAAGCATTCAGTGGAAAATCTTCTTTGGTAACACACAGGAGGATTCACACAGGAGAGAAACCATATTCATGTTCAGAATGTGACAAAGCATTCATTGAAAAAAGTTGTTTGGTAAAACACGTGAGAACTCACACAGGAGTTAAACCATATTCATGCTCAGAATGTGACAAAGCATTCAGTAACAAATCTTGTTTGGCAAGACACATAAGGACTCACACAGGAGAGAAACCATATTCATGTTCAGAATGTGACAAAGCATTTACTGATAAACGTAATTTGATAAAACACAATATGAAGATTCACACAGGAGAGAAATTGTATTCATGTTCAAAATGTAACAAAGCATTCAGTGTTAAAAATAAGTTGGTAGTACACATGAGAATACACACAAAAGAGAAATTGTATTCATGTTCAAAATGTAACAAAACATTCAGTGTTAAAAATAAGTTGGTAGCACACATGAGAATACACGCAAAAGAGAAATCATATTCATGTTCAGAACGTGAAAAATCATTCAATGAGAAAGGTTGTGTGGAAAATTACAAGAGGTTTTGTACAGGGGAGAAACCGTATTCAAAATGTAATAAGCTGTGCATTGATACAAGTGTTTTTGTAAGACATAAGAGTACACATCAAAGCGAGAACTCTTATCATCTATGTTTAGAATGTGATAAACAGTTCCATCAAAAAATTAACTTGGCAGCACACGTCATGAAGACACACACAGGCAACGAACTTGCATGGATGTGGCTTGCAGTATAG
Protein Sequence
MRIHTGEKPYSCSECDKAFSEKSRLVKHMRTHTGEKPFSCLECNKAFSEESRLVKHMRNHTGLKPYSCSECDKTFSQNSCFVRHMRIHTGEKPYSCSECGKAFSDKSSLVTHMRIHTGEKPYPCLDCDKKFRKKGNLKIHMRLHTGEKPYLCTECDKAFTTKHSLAIHMRTHTGEKPYSCSECDKSFSEKSCFVRHMRIHTGEKPYSCSECDKAFSENSCLVIHMRTHTGEKPYSCSECGKAFSGKSSLVTHMRIHTGEKPYPCLDCDKKFRKKGNLKIHMRLHTGEKPYLCTECDKAFSTKHSLAIHMRTHTGEKPYSCSECDKSFSEKFYLVPHMRIHTGEKPYSCSECDKAFSEKSGLVKHLRTHTGDKPYSCSECDKTFSQNSCFVRHMRIHTGEKPYSCSECDKAFSEKSRLVKHMRTHTGEKPFSCLECNKAFSEESRLVKHMRNHTGLKPYSCSECDKAFNYKSSLVTHITIHTGEKPYSCLDCEKTFRKKGHLIRHMRIHTGEKYSCSECDKAFSEKSGLVIHMRTHTGEKPYSCSECDKAFSEKNGLVIHMRTHTGEKPYSCTECDRAFSEKSSVVTHMRIHTGDRPYSCSGCDKAFSEKSRLVNHIRSHTGDKPYSCSECDKAFSVKRYLFAHMRIHTGEKPFSCSECDKAFIEKSRLVKHMKIHTGEKPFSCSECDKSFSEKSSLVTHMRIHTGEKPYACSECDKAFSEKSGLVTHMRTHTGEKPYSCLDCDKTFRRKGHLIRHMRLHTGEKPYLCSECVKAFSTKHSLLIHMRTHTGEKPYSCSTCDKAFSDKSSLVTHMRIHTGEKPYSCSECDKAFSEKSYLVTHMRIHTGEKPYSCSKCDKAFSEKKRLVKHMRTHTGDKPYSCSECDKAFSVKGYLFAHMRIHTGEKPYSCSECDKAFSEKCRLVKHMRIHTGEQPYLCSECDKAFSGKSSLVTHRRIHTGEKPYSCSECDKAFIEKSCLVKHVRTHTGVKPYSCSECDKAFSNKSCLARHIRTHTGEKPYSCSECDKAFTDKRNLIKHNMKIHTGEKLYSCSKCNKAFSVKNKLVVHMRIHTKEKLYSCSKCNKTFSVKNKLVAHMRIHAKEKSYSCSEREKSFNEKGCVENYKRFCTGEKPYSKCNKLCIDTSVFVRHKSTHQSENSYHLCLECDKQFHQKINLAAHVMKTHTGNELAWMWLAV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-