Cfla029776.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Coleophora flavipennella
Gene Symbol
-
Assembly
GCA_947284805.1
Location
OX369276.1:14441732-14444230[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1.2e-07 5.9e-05 24.1 0.0 3 39 17 53 15 57 0.92

Sequence Information

Coding Sequence
ATGCCAAGAAAAAGAGAACGCACCACCACGAAAGCATCTTGGACTGTCGAAACCTTGGAAAATGCTATCAGAACACTACGCAATGGCAGTACATCTGTCTACAAGGTATCAAAAGAGACTGGAATACCTTACAGCACATTGAAAAAGAGGTACAAATTAGCTAAATCGAGCAATGATAGCTACAAATGTCCTCCAAAGCTAGGAAGGCCCTCTGTTTTCACTAAGAATCAAGAAGCCATTTTGGCTGATCATATTCGTAGAATGACAAAAAAGTTTTACGGTCTGTCGAGGACTAAGTTCTGTAAAGTATGTTATGAAATGGCTGAAAAATTTGGTGTCGCAGATCAATTTAACGAAGCAATGAAGTCAGCGGGAAAAGACTTTCTAGCTGGATTTTTACAACGACATCCTGATCTAAGTATAAGAAAAGCAGAAGCGACAAGCATAAATAGAATACTTGGATTTAATAAAGAAGAAGTGGATCTATTCTTTAAAAATCTGGAGAATGTCATGACTAAATACTCCTTTTCGCCGTCACAAATTTATAATATGGATGAGACTGGCGTCACGACGGTTCAGGAATCAGAAAAAAATATAGCGCCTAAGGGACAAAAACGAGTTGGAACAGTCACATCGTGGGAAAGAGGTAAAAACGTCACGGTTGTATGTGCTATGAGTGCTTCCGGGTCCTTCATTCCGCCTCTTTTTATTTTCCCTAGACAACGTCACTCTCCGCAGCTAGAAAAGGATGGTCCACCAGGAGCTGTTTATACATGTTCCCATAACGGTTGGACAAATGAAAGCATATACATTAAATGGCTGAGACATTTCATTGCGCACTCAAAACCTACCGCTGAAGAACCTGTTCTCCTGATTTTAGACAACCACAACAGTCACTGTACTTTAGAAGCGTTTGAACTGGCTAAAGCAAATAATGTACATGTGCTTTCTATTCCACCACATTCATCACACCGCTTACAGCCTTTGGATGTGACTTTTTTCGGCCCGCTCAAAAAGGCCTACAACAAGGAATGCGACATGTTTATAAAATCGAGAAATATGGTAAAAATTACACCATACGATATTGCAGGATTCTTCAACAAAGCTTATGTCCGAGTAGCATGCTTAGATAAGGGGATTTCTGGCTTCAAAGCCACAGGAATTTTTCCAATGAACCCTGATATATTTTCAGAAGATGATTTTGTTGTTATGGAGGGAGATCAGAATCGAGTTAATGATCAAACAAGTTCGACTTCTGTTGCTCAGTCTCAACAGTTAGCTACTGGCAACTCCGACGCACTTCCGTCTACATCTCGTCATACTGGTGACCTTCAAACACTACCGTCTACGTCTCGCGATGCTGATAACTCTGATCATACATCGTGTGATACTGATGGCTCTGAAACACTTCCGTCTACATCACGTGGTATTCATCAGGATCAAGACATGTATAGCTCTGTCCTAGTCCGATCTACGCCAGATAAGGAACAAGAGCATAACCCTGATATACACCAAGAAAGTCCATCAATATTAAGTGATCCACAAGAGAAGGACACAGCACCGAAACTGTTATCTGACATCAACCCTGCCAAAATCCTGTCAGCGGAGCCAGCTTCAGCCAAACCAGCCACAACTTTATCCACAACAAACGAAGTTCAGGAACAGTCACTTTATACAGCTCCAACCTTATCAGAACTATCGTTCAATATTCTGCAGGCAGCTATTGTTAACTTTGATGCCCAAACATCGGCTTGTCCCTCATCGACAGCAAACGACATTCAAGAACAGCCACTTCATACACATCCAGCCATAACAAACGATACAGTACAACAACCAAACATTCTGCTGGCAGCAACTGTCCAATCATCGGCCTGTACCTCAAAAAATGCTGAAAAATTAGATTTCTTGAAAGTTCTATCGGCAGTGAGTCCACTACCTAACATAACACACGTTAATAAGACTTCACGACAAAAACAACATTCTGTCATCTTAACAAGCACGCCAATGAAAACGGTATTTGAAGAGAAAGAAAAGAAACGTTTAGAAAAACAAAAAAACAATCCAAAGAAGAGAGGACAAACTAGCAACAAAAAAAGAAAAACAGTTTCTGAAGAGAAAGAAAAGAAAAGTGTAGGAAAAAAATGTAAAACTACGATCAATTCAAAAAAAAAGGGACAAACTAGCAAAGAGAGTGTATGTACCCCAGAAAAAGGAAAAAAACGAAAGAAGACAGTTATCAAAAAAGAAAAGGTGAAAAGAGTAAAAAAAGTTCTTTTTGAGGATGACACCGACACTTCTGAAGAAGAGGACATTGTGAATCTTTGCGATGATGAGTCTGAATATTCAGAAGAAGAAACATTGTGTGCTGTTTGCTGTGACACCGGAAAAAACAACGAAATGTGGTACCGTTGCAGAAGTTGCGGTAAATGGGCTCATAAAGAATGTTCTGGTTCTGACAGCCCGGTTGATTATATTTGCGTTTTTTGCTTGGATCCTTAA
Protein Sequence
MPRKRERTTTKASWTVETLENAIRTLRNGSTSVYKVSKETGIPYSTLKKRYKLAKSSNDSYKCPPKLGRPSVFTKNQEAILADHIRRMTKKFYGLSRTKFCKVCYEMAEKFGVADQFNEAMKSAGKDFLAGFLQRHPDLSIRKAEATSINRILGFNKEEVDLFFKNLENVMTKYSFSPSQIYNMDETGVTTVQESEKNIAPKGQKRVGTVTSWERGKNVTVVCAMSASGSFIPPLFIFPRQRHSPQLEKDGPPGAVYTCSHNGWTNESIYIKWLRHFIAHSKPTAEEPVLLILDNHNSHCTLEAFELAKANNVHVLSIPPHSSHRLQPLDVTFFGPLKKAYNKECDMFIKSRNMVKITPYDIAGFFNKAYVRVACLDKGISGFKATGIFPMNPDIFSEDDFVVMEGDQNRVNDQTSSTSVAQSQQLATGNSDALPSTSRHTGDLQTLPSTSRDADNSDHTSCDTDGSETLPSTSRGIHQDQDMYSSVLVRSTPDKEQEHNPDIHQESPSILSDPQEKDTAPKLLSDINPAKILSAEPASAKPATTLSTTNEVQEQSLYTAPTLSELSFNILQAAIVNFDAQTSACPSSTANDIQEQPLHTHPAITNDTVQQPNILLAATVQSSACTSKNAEKLDFLKVLSAVSPLPNITHVNKTSRQKQHSVILTSTPMKTVFEEKEKKRLEKQKNNPKKRGQTSNKKRKTVSEEKEKKSVGKKCKTTINSKKKGQTSKESVCTPEKGKKRKKTVIKKEKVKRVKKVLFEDDTDTSEEEDIVNLCDDESEYSEEETLCAVCCDTGKNNEMWYRCRSCGKWAHKECSGSDSPVDYICVFCLDP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00356135; iTF_00356144;
90% Identity
iTF_00356144;
80% Identity
-