Cfla017325.1
Basic Information
- Insect
- Coleophora flavipennella
- Gene Symbol
- -
- Assembly
- GCA_947284805.1
- Location
- OX369253.1:5963191-5965541[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.4e-08 4.1e-05 24.6 0.2 5 38 17 50 15 56 0.89 2 2 1.4 6.6e+02 1.5 0.0 1 13 546 558 546 561 0.89
Sequence Information
- Coding Sequence
- ATGGAGCCTCCTCCAAAAAAACCTAgaggactttggacactgcaacagttacaaggtgcaatggcagctgtgcaaggcaatttaatgtcgcaacgtgcagcagctgctcggtattctatccctagaagaactttaaaaaatcacctagaatcaggtaaagttgaaaaacaaatagggcgtcgcactatattgaccgcagaacaagaaaatgaattggcgtcaagaatcaaaagacttgcttctgtagggttccctttaactccaaaacgtattcgtcatcaagcatacgtattttgtgaacagaacgaaatttctcataattttaaccaaaaaaataaattggctggcaaagattggttgaaattatttttaaaaagacatcccgatatatcaaagaggaaggttcagattttaaatcctggtagagcacaaaagcttaataaacctattgtcatgcatcactttgaaatgtacaaaaaaaaatacgacgaactagagatcgaagatcatccacaccgcttgtataatatggacgaaaaaggctgtagacttaatatacacaatcaaccaatggtattagctcaaaaaggagcgaaacgagtacatatggttgcaccagaacatgcagaaaatgttacagtggctgcctgcgttaatgcactaggtaatccgataccaccgatgatcatatttaaaggaaagagattgaaagccgaattcaaagataatttgccagcaggatcgctcgtaaaaatggcaccaaaaggtagcatgacaaccgcgttgttcatagatttcatacatcatttggggaaatacaaatcacccggtaagtgcttgctaatttttgatggcgcctcctgtcacttagattatcgtattgtgaatgcagctgatgtggaagatatcgtgttgtattgtttgccttcaaatacaactcacgagctgcaaccattagacaaaagtgtgaataaatcgttcgagcaccactggaacgaagaaactttgttgtttttataccatcacccggaaaaaaaattaaacaaagcgcgattcaacataattttaagcaaagtctggtcaaagtgtatgagtcactcgaatattgttgctgggtttagagctacagggctatatccctacaatccggatgcaatcgcagaagaagcctatgcaccagctgtcttgacggaaatatttccggctcaagaaCATGTTTTCTCGCGAACTGATCCTTGTCTGCCACAAGCTCCATCTCCTGGTTTTTCCCATTTAAACGCAGACCGAAGAACACAAGATCATACTGGTACAAACTCTGACTCTAATGAAACATATTTTGAAGACAACAGTCCAAGTTCACCATCTTTGCTTCGACGCAACGAAGACCGAAGAACACAAGATCATACTATAACAAACTCTGACTCTAATGAAACATATTTTGAAGACAACAGTCCAAGTTTACCATCTTTGCTTCGACGCAACGAGTTATCTTCTCCTGTTTTGGCTAACAGAGAGATACGTTTAGTCGATTACAGTTCGACAAATTCTGAATCCTCTAATTCAAACTTGTCCCCAAAACCTGGCACATCTGGAGCTGCTATAAGACGGCCAATAATTTATAGCTCTGATTCTGAAACAGATGAGTCTTTTACTGAAGCGCTAGCTATGTATCAAAGGCAACTACAATCTACCCTAAACTTATACAGTTCATCAGAAGATGAAAATATAGATCCATTATCCCAACACCGTACTCCCGAAAAACACATGAAAACCTCAATTTTCAACACTGATACAAGAGAAGTAAGTCACAATTCTTCGACAAGCGATGATTCGGAAGATAACGTACCATTGATATACTTTAGGGATAAAAAGAACGTTAAGTCAAAATTTCATCAGCTACTTCCAACACCAAACTTAGCTGTAGTGAAACAAAAGCCAAGACGTAAAGCGATTAATTATAAAGCCCAAATAGTAACCAAAGATTTATTTCAACAAAAAAATATCGAAAAACCAAAACAGAAGAAGCAGCAAAAGCGGCAGAATAAAGAAAAGAAACCTCAACAAAAAAAGGAGATAAAAAAACAAGTCAGCCGAAAAAAAAAGATAATCGAAAAGAAAAGGCCAAACAATTTGAAAATGGCTCTGATAAAAtggtactgccacgcatgtaacacagagagttttgaagacatgcgacaatgcccaatgtgccaaagatggttccatgaacaatgtttgggcttaacaaaagatgatgttgattttgaatgtcctaagtgtgattag
- Protein Sequence
- MEPPPKKPRGLWTLQQLQGAMAAVQGNLMSQRAAAARYSIPRRTLKNHLESGKVEKQIGRRTILTAEQENELASRIKRLASVGFPLTPKRIRHQAYVFCEQNEISHNFNQKNKLAGKDWLKLFLKRHPDISKRKVQILNPGRAQKLNKPIVMHHFEMYKKKYDELEIEDHPHRLYNMDEKGCRLNIHNQPMVLAQKGAKRVHMVAPEHAENVTVAACVNALGNPIPPMIIFKGKRLKAEFKDNLPAGSLVKMAPKGSMTTALFIDFIHHLGKYKSPGKCLLIFDGASCHLDYRIVNAADVEDIVLYCLPSNTTHELQPLDKSVNKSFEHHWNEETLLFLYHHPEKKLNKARFNIILSKVWSKCMSHSNIVAGFRATGLYPYNPDAIAEEAYAPAVLTEIFPAQEHVFSRTDPCLPQAPSPGFSHLNADRRTQDHTGTNSDSNETYFEDNSPSSPSLLRRNEDRRTQDHTITNSDSNETYFEDNSPSLPSLLRRNELSSPVLANREIRLVDYSSTNSESSNSNLSPKPGTSGAAIRRPIIYSSDSETDESFTEALAMYQRQLQSTLNLYSSSEDENIDPLSQHRTPEKHMKTSIFNTDTREVSHNSSTSDDSEDNVPLIYFRDKKNVKSKFHQLLPTPNLAVVKQKPRRKAINYKAQIVTKDLFQQKNIEKPKQKKQQKRQNKEKKPQQKKEIKKQVSRKKKIIEKKRPNNLKMALIKWYCHACNTESFEDMRQCPMCQRWFHEQCLGLTKDDVDFECPKCD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00198056;
- 90% Identity
- -
- 80% Identity
- -