Cfla028709.1
Basic Information
- Insect
- Coleophora flavipennella
- Gene Symbol
- clz9
- Assembly
- GCA_947284805.1
- Location
- OX369292.1:2547889-2550846[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.3e-08 1.1e-05 26.4 0.1 1 36 24 60 24 67 0.90 2 2 1.4 6.7e+02 1.5 0.1 26 40 894 908 890 911 0.88
Sequence Information
- Coding Sequence
- ATGCGTGTATACGTTCGAAAACTGAGGTCTATACGAAATGGTAAAACGTTCATTCCGTACAAAAGTTACACGGAAGAGGCTTTGCATTATGCAATAGAAGCTGTAAATAGCAAAAGACTGTCACTAAACGATGCTTCAAAATTATATAAAATTCCAAAAGCTACTCTATCTAGAAAACGTCGAAACTTGAATTCAACTCAAGAGAAAGCAGGTCATCCTACCCTGTTTTCAGTTAGTGAAGAAAAAGCTTTTGTAAATTTTATGAAAATTCTAAGCAATTGGGGGTTTCCATTTGATGTTATGGATCTGCGGATTCTCGCTCAAAAATACTTAAACAAAATTGGAAAGAAAGTTTATACCCTAAACGATAATATGCCGGGACCAGACTGGGCGAGAAATTTTTTAGAGAGACACAAAGACAAAATTTCCTTTCGCACAGCATCCAATATTTCGACAGACAGGGCTAAAGTATCCCCTGAAATTATGAACTTATTTTTTGATAATTGGACTCAGACAGTGGCAGGTGTGGACCCGTCTCGTATCATCAACTATGATGAGACAAATTTAACTGACGATCCCGGTAACAGAAAATACATTTACAAGAGGGGCATTAAATACCCGGAACGAGTCATAAATACATCTAAAACTGCTGTCTCGCTCATGTTCAGTGCTACAGCCAGTGGAATGCTATTACCCGTGTATGTGGTTTATAAAGCGGAGCATTTATGGGATACTTGGCTCGAAGGTGGTCCAAAGGATACATATTATAACCGATCTAAAAGTGGTTGGTTTGATAATATCTGTTTTCAAGACTGGTTTAACTCAGTAATTGTGCCTTATGCCAAAAAACAGAATGGGGAAAAGGTGGTTGTGGTAGGAGATAACCTATCGTCCCATTTCTCCGAAAATGTCCTCAAAACTTGTGAAAAGCTCAACATAGAGTTTACCTGCCTTCCAGCGAAATCAACACACATTTTACAGCCTCTAGATGTGGCTTTATATGGCCCCTTGAAGCACTACTGGAGAAAAGTTTTAACAGAATGGAAAGAACTTGAAGGCCGAAAACACAAAACATTAGTAAAGAGTTGTTTTCCTCGATTACTGAATAAACTACTAACCAGACTATCTGAAAATGACGCAGGGAGCAAAAATATCATCGCGGGTTTCAAAAAGTGTGGTCTCTACCCCGTTAATGCTGAAGAACCCTTGTCAAGATTGCCGCAAAGTTCCATTGTGCCCGAAGAAGTGAATTTAATTACAGCTGATGCAATCACCGAAATATTACAAGAGATGAGAGGAGTTTCAGCTCCCCAGTCCGAAACACGGCGAAAAAAACGATGTCAGGTACCACCAGGTAAAGGTATCAGAGCAGATGATATTCCGGCAGTATCCAATACAACAAAAGCGAAGAAGAAGAGTAAAAGCAATGTTAAGCGTAAACAAACCAAGAAAACCCGGTCGACTTCAAAGGATTCAACATCAGAAACCGTAAGCCTGGTTGATGACGACTATGATGTGCCACCCAATACCTTAACTGATATTGACGTTACAGGAATTGATACTCATGATATTTCAGCACCAGGTCCATCAGGTCTTAACAGGAAGAGACAAAGTAAAAATGAAAAATATAGTGCTAAAAATAAAAAGCGCAAAATTTCACCTATTAAAACTAAAAAAGGAAAAGGCGTCGGAAAAAAAAGTCGTACGTGTGAAAACGAGAACCTGGTCCTTAATACACAGAAGAAAACTAAATCATCGATAAAAAAAAAATACAGAAGATTATCTTCATGTTCTACCAGTGTTACTGATAATATCAGCTTATACAATGACTCCGATATTACAGATATACTTGAGGAATTCGATTTTGATCGCGATTTGGGATATGGAAACATAATATTTCCAGAAGAAGAAACAGTTGAAGTAATTGCTTCAAAAGTAAAACTGGGCGTACTTGCCGACAAGGAACTAGAGGACGTAAGTGCTAGATCAAAGGAAAGGGAGAAAAAGTCTGAGGAAAATGAGAAAAGCACGGAGATAAGTGTAAATGATAAACCGAGGGTATTTTCTGACAAGGAACTAGAAGAAGGCGCTAGCTCAGAGGAGAGAGCGAAGAAGCCAGAGGAAGATGGTGGAAATAAGGAAATAAGTTTAAATGATGAACCAGGCTTATTTTCCGACAAGGAACTGGAAGAAGATGCTAGGTTAGGGGAGAGAGCGAAGAAGCCAGAGGAAGATGGTGGAAATAAGGAAATAACTTTAAATGATGAACCAGGCTTATTTTCCGACAAGGAACTGGAAGAAGATGCTATGTTAGGGGAGAGAGCGAAGAAGCCAGAGGAAGACGATAGAAATGACTGTGTATATGTAAATAACGAACCAGATGTAGTTTTCGAAAAGGAATTAGCGAAGATACGTGCTAGATCAGAAGAGAGGGAGAATAAGTCAGGAGAAGATGAGAAAAATAAGGAAACGAGTATAAATGACAAAAATGGCGTATTTTCCGACAAGGAACCAGAAGTATTTGTTATTTCAGAGGAGAAAGCGAAGAAGCCAGAGGAAGATAATAGAAATAAAGAGATGAGTGTAAATGACGAACCGGGCATATTTTCCGACAAGGAACCAAAAGATGGTTGTAGTTCAGAGGAGACGCCAAAGAAGCCAGAGGACGCCGAGGAAAATTATGACATTAACGAGCATGTGTTAGTTAGATATTACAGGAAAAAATGGAAATATTATACTGGATTTATAGAAAGAATACAGTCAGGAAGTGATAAATCTTATCAAATAAGGTTTTACAAGACTTGTAAGAATCCGTTAAGGTTTGTCCTCATGAAAAGGCCAGATCGAGACGTTGTTCCTGTATTGTGTATTGTGAAGAAAATTCATCTGAGTCAAGGCCCCAATAACTCAAAAGAGTTCTTCCTAATGAATGAAGAGGACGAGATATATTTTGATTGA
- Protein Sequence
- MRVYVRKLRSIRNGKTFIPYKSYTEEALHYAIEAVNSKRLSLNDASKLYKIPKATLSRKRRNLNSTQEKAGHPTLFSVSEEKAFVNFMKILSNWGFPFDVMDLRILAQKYLNKIGKKVYTLNDNMPGPDWARNFLERHKDKISFRTASNISTDRAKVSPEIMNLFFDNWTQTVAGVDPSRIINYDETNLTDDPGNRKYIYKRGIKYPERVINTSKTAVSLMFSATASGMLLPVYVVYKAEHLWDTWLEGGPKDTYYNRSKSGWFDNICFQDWFNSVIVPYAKKQNGEKVVVVGDNLSSHFSENVLKTCEKLNIEFTCLPAKSTHILQPLDVALYGPLKHYWRKVLTEWKELEGRKHKTLVKSCFPRLLNKLLTRLSENDAGSKNIIAGFKKCGLYPVNAEEPLSRLPQSSIVPEEVNLITADAITEILQEMRGVSAPQSETRRKKRCQVPPGKGIRADDIPAVSNTTKAKKKSKSNVKRKQTKKTRSTSKDSTSETVSLVDDDYDVPPNTLTDIDVTGIDTHDISAPGPSGLNRKRQSKNEKYSAKNKKRKISPIKTKKGKGVGKKSRTCENENLVLNTQKKTKSSIKKKYRRLSSCSTSVTDNISLYNDSDITDILEEFDFDRDLGYGNIIFPEEETVEVIASKVKLGVLADKELEDVSARSKEREKKSEENEKSTEISVNDKPRVFSDKELEEGASSEERAKKPEEDGGNKEISLNDEPGLFSDKELEEDARLGERAKKPEEDGGNKEITLNDEPGLFSDKELEEDAMLGERAKKPEEDDRNDCVYVNNEPDVVFEKELAKIRARSEERENKSGEDEKNKETSINDKNGVFSDKEPEVFVISEEKAKKPEEDNRNKEMSVNDEPGIFSDKEPKDGCSSEETPKKPEDAEENYDINEHVLVRYYRKKWKYYTGFIERIQSGSDKSYQIRFYKTCKNPLRFVLMKRPDRDVVPVLCIVKKIHLSQGPNNSKEFFLMNEEDEIYFD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00356116;
- 90% Identity
- iTF_00356116;
- 80% Identity
- -