Cfla027160.1
Basic Information
- Insect
- Coleophora flavipennella
- Gene Symbol
- -
- Assembly
- GCA_947284805.1
- Location
- OX369282.1:11117060-11118007[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4e-10 1.9e-07 32.0 0.0 2 39 16 53 15 55 0.94
Sequence Information
- Coding Sequence
- ATGGTGCGGACTTACAAAAAGAAGACAAAAAGAGGGGAGTGGTCTAAAGAATCCATGAAAAGGGCAGCAGAAGATGTGATAGGGAAAAAGTCAGGATTTAGAAAAGCTGCTGCAAATCACGGTGTGCCACAAACTACGTTGGAGCGATATGTACAAAAAATAAGACGAGGGGACGAAATATTATTTGGAGTACCTTTGGGGCCCATCAAAAAAGTATTTAGTAATGAAGAAGAGTTGGAGATAGTTTCTTATTTGAAACATATGGaagaacggctttttggtttgacgacactcgaccttagacgcatggcgtacgaattggctgtgaaaaataataaaaaacacaattttaatgttgaaaaaaaaatggctggtgtcacctggctcaatggtttcctgggtcgtcatcctgatttggctattcgtaaaccagaggctacttctgcagctcgtgcaatgggctttaacagagtcgcagttagcaagttttatgagttacttggcgagatatacgacaagcataacttaattccggacaaaatatacaattgcgatgaaacaggcgtgtccgttgtttctaaaacaaaaagtaaaataatagcaatgaaaggaaggcgacaagttggctctctatcttccgcggaaaggggacagaccgtgactgttgaaatttgtttcaatgcggctggaaactacatgccacctctgataatctttcccagacaacggatgaagcctgaactattagaccatgcaccgccagggactacagcagcctgtaatccaaaaggatggataaatacggacatctttaccgtatggtttagacagttcatacaattttcaggagctactgccgataataaagtgttgctgcttcttgatggtcatgtgagtcatactcaaaatttagaagttatagacacctggctcgagcaaatggagtaa
- Protein Sequence
- MVRTYKKKTKRGEWSKESMKRAAEDVIGKKSGFRKAAANHGVPQTTLERYVQKIRRGDEILFGVPLGPIKKVFSNEEELEIVSYLKHMEERLFGLTTLDLRRMAYELAVKNNKKHNFNVEKKMAGVTWLNGFLGRHPDLAIRKPEATSAARAMGFNRVAVSKFYELLGEIYDKHNLIPDKIYNCDETGVSVVSKTKSKIIAMKGRRQVGSLSSAERGQTVTVEICFNAAGNYMPPLIIFPRQRMKPELLDHAPPGTTAACNPKGWINTDIFTVWFRQFIQFSGATADNKVLLLLDGHVSHTQNLEVIDTWLEQME
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00038626; iTF_01534747; iTF_01533863; iTF_01534748; iTF_01534749;
- 90% Identity
- -
- 80% Identity
- -