Cfla016457.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Coleophora flavipennella
Gene Symbol
-
Assembly
GCA_947284805.1
Location
OX369265.1:9878198-9880693[+]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 2.5e-11 1.2e-08 35.9 0.0 2 38 11 46 10 51 0.95

Sequence Information

Coding Sequence
ATGCCGAAAAAGACAGTTACCCCTTACAATCCTACTGACTTAGAGAAAGCCCTGGTCGAAGTTCAAAATGGTACACCAATACGAGAAGCTGCAGACATGTATGGCGTTCCGAAGTCAACTTTGCATTACAGAAAGAAATATCCTGAAAAAAAGGTTACCTTGGGACCATTGCCTTACCTAACTGTCGAAGAGGAAACTTGCCTCGAAAACTGGATCAAACAATTATCAAAAAAAGGCTTTCCACTCAAAAAAGAAGACCTCCAATCCAGTGTACAAAGATTTTTAAACGATCATCCACGACCGAACCCATTCATTAATAATTATCCTGGAGAAGGTTGGGTTAGGGGATTTCTAAAACGGCATCCATCCATCGGCACAAGGACGAGTGAAGGTGTTACGTTCTCTAGTGCCTGTGTCACAGAAGTAGATATTCGCAATTGGTTTGCTGAAATTCGTAAGTATTTTGAAGAAAGAAGTTTAGTACAAGTTTTTGACGATCCAAGACGCGTATTTAATGGTGACGAGAGTGGTTTCCAGCTATGTCCCAAAACAGGAAAAGTTTTGGCAGTGAAAGGCCAGAAAAACGTTTATTGCGTTGAAAACAGTTCTTCTAAAGAGAACATCACAGTTATGTTTACGTTTTCAGCGTCAGGCCAAAGTTGTCCTCCAATGGTCGTCTATAAGTACCAGAGGATTCCTCAAAAAGTGATAGAATCTGTGCCTTCGGATTGGGGTGTAGGCAGGAGTGAAAACGGATGGATGACAACAGAATTATTCTTTGAATACATAGGTAACGTCTTCCATCCATACCTAATTAAGGAAGGAATAACTCTGCCCGTAATATATTTCCTTGATGGTCATAAAACACACTTGACTTATGAGGTCAGCAAACTATGTTCCGAGCTACAAATAGAACTGATCGCGTTGTACCCCAATGCCACCCGAATCTTACAGCCAGCAGATGTAGCCGTGTTTCGACCAGTGAAAGCAGCTTGGAAAGCAGCTACTAGAGAATACTTGAACAATAATCCAGGCCAAGCTATTACAAAAGCAAACTTTGCCCAAGTCCTTGATGCAGCCCTTCAAAAGTCGATTAAGCCACAGACACTGCAAAATGGATTTAAGGCATGTGGCTTGGTTCCTTTTGATCCTGATGCGGTTGATTTTACTAAGTGTGTCCCAATAAAAGAGCGAGCTGTTGATGGCATTAATGTCTTATACGACAAGACCATTACATTTTCCAAATTTTTGGAATTGGTTGGGCCCAGCAAAGCTTCAGAATTGCAAGAGTGTGAAAATACTGAACATATCGATGAAAATTTTCGGATACTACACAAAATATATCAGAGTTTTGGTTCACTAAAAACTGCCCTTCCGAAACAAACGGACCGGAAGTGGACTATGAAAAACTCAAACTCTGAAGTGCAAATATCAACATCACCAATTAAGAAAACACATCTTGCTGTCGAAGGCTTGGCTCCCAAATTGCCAGGCATTGCACATGACAGTGATACAGATATAACATTATCTCCAACAATTCTCCAGAACTACAATGAAATTTCGCCCTTTGAAGACTGCAATAGTTTCACAGAATCTGCTCTTCTGCCAATGGAAGAGACTACTCAGCAGGCTTGCCCAACGTCAGGGATACAAATTCTTGAAGACATTACAATACCGAGGCAATCTGACTCTAATTCAAGACTGTGCCCTATTACAGGGCTCTTTAAAAATCCTTCGTTTACTAGTGAACCCGAAAAAAATGAGCATTTGGAAGAATTCAGCCTATGCCCTGTAACAGGAGAGTTAAAAACGATATGGCCCACAAACGAATTTCACCAAATCCTGCAAAAGACGCCAATAAAGGAACCAAGCCAGGTTATATCAGCTGACCGAGATCAACATGCATGGCAGACTCTATCACAATTGTCTGAAATAAGTCCGGCTTTTAAAGTACGCAACTCAGACCTTGGTACCTACCTTACGTTACCTAAAACACCGGAAAGAAAAGGTAAACGGGACGTCAAAAGAATGCCGTTCGCTATTACGTCAGCTAAATACAAGGCTATGTATAAAGAACAAATGAAAAAAAAAGAAACAGAGACACTAAAAAAAGAACAGAGAAAAAAACTGAGACAAGAAACTAAAGAAAACAAAGAAAAAAGCAAAAAAACTAAAAAGAAAATTGCAAGTAGCACTACAAATACATGTAAAATTTGTTTAAAGGCAACAAAAACACACAATCGAGTTGTGTGTGACATGTGTTCAGACATATTTCATGTAAAATGTGTCCCAGCGAAACACAGAGTTCACGTTCCACAAGATATAACCATTGATTTATATGTATGTCATTCTTGCTATAAAGAGGAAATTGAAGAATATGAAGAGAACCAGTATTTTGAACCAAACATAAGTGACGATGACATGGTTGATGAAGGAAACAGTGAAGAGACTGCGAATTTTTTGTTCAATGAGTATTTGGTGTCAAAGAAAAAATAG
Protein Sequence
MPKKTVTPYNPTDLEKALVEVQNGTPIREAADMYGVPKSTLHYRKKYPEKKVTLGPLPYLTVEEETCLENWIKQLSKKGFPLKKEDLQSSVQRFLNDHPRPNPFINNYPGEGWVRGFLKRHPSIGTRTSEGVTFSSACVTEVDIRNWFAEIRKYFEERSLVQVFDDPRRVFNGDESGFQLCPKTGKVLAVKGQKNVYCVENSSSKENITVMFTFSASGQSCPPMVVYKYQRIPQKVIESVPSDWGVGRSENGWMTTELFFEYIGNVFHPYLIKEGITLPVIYFLDGHKTHLTYEVSKLCSELQIELIALYPNATRILQPADVAVFRPVKAAWKAATREYLNNNPGQAITKANFAQVLDAALQKSIKPQTLQNGFKACGLVPFDPDAVDFTKCVPIKERAVDGINVLYDKTITFSKFLELVGPSKASELQECENTEHIDENFRILHKIYQSFGSLKTALPKQTDRKWTMKNSNSEVQISTSPIKKTHLAVEGLAPKLPGIAHDSDTDITLSPTILQNYNEISPFEDCNSFTESALLPMEETTQQACPTSGIQILEDITIPRQSDSNSRLCPITGLFKNPSFTSEPEKNEHLEEFSLCPVTGELKTIWPTNEFHQILQKTPIKEPSQVISADRDQHAWQTLSQLSEISPAFKVRNSDLGTYLTLPKTPERKGKRDVKRMPFAITSAKYKAMYKEQMKKKETETLKKEQRKKLRQETKENKEKSKKTKKKIASSTTNTCKICLKATKTHNRVVCDMCSDIFHVKCVPAKHRVHVPQDITIDLYVCHSCYKEEIEEYEENQYFEPNISDDDMVDEGNSEETANFLFNEYLVSKKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00356090; iTF_00356091;
90% Identity
iTF_00356088;
80% Identity
iTF_00356090;