Cfla003204.1
Basic Information
- Insect
- Coleophora flavipennella
- Gene Symbol
- -
- Assembly
- GCA_947284805.1
- Location
- OX369268.1:2069250-2071193[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1e-11 4.9e-09 37.1 0.0 3 38 17 53 15 56 0.94
Sequence Information
- Coding Sequence
- ATGCCGCGTAAGTATCAAAGGACGTCTAATAGACAAGAATGGAACTCGGAGGATATGAAAAAAGCTATTAAAGCAGTATTTGACGGAAATTTGGGATACAAGAAAGCAGCACAAACTTATAATGTTCCAAAATCTACATTACAAGATAGAGTAAACCAATTTAGACAAAACAACGATCTGTGTGCTTCAACACAAAAAGGCTTAGGAAGATTTAAACCTACATTTTCGTCTGACCAAGAAGACTTATTGgttgaacatgtgttaacgatggaaagacggttgtttggtctcacgtataaagatctacgccgcttggcgtatcaacttgcagaagcgaataatatcgaccatggtttcaataaaacctacaaattagctggagaagattggctagttggatttatgaagcggcatccacaattatcactacgcgcagccgagcccacatctatagcaagagccatgggctttaacatgacaagtgtaaacaatttttttgatttattagaacaggtaatagatcaatataaatttcagtgtactaggatctataatgtggatgaaacgggtctgacaacagtccctaaacagataagcagaattatagctttaaaagggaagaagcaagtcggtcttgctagttctgcagaaagaggtcagcttaccacagctgtcctttgtgtttctgcttctggtaactatgtacctccactgctgatatttccccgcgttcgcatgaaggcagaactgttggacggtgctccaccgggaacagtttcagtttgccatccaagtggctggatacaaagcgaaatttttgttgagtggctgaatcacttcatatctgcagtaaagccaaagaaagaagacccggtcctacttttgcttgatggacactcgactcatacaaaaaatctcccattaattgaaaaagcaagggaaaacggagttgtgatgctaagctttccacctcattgcacccatagattacagcctttagacgttagtatcatgggtccaataagcacatattatacacaagaagtaaacacgtggcttagaaataatcccggtagagtagtcacccaattccaactggcgagactttttggatcagcctattgcaaagcggctacaatacagaatgcagcatctggtttttctaaaacaggcatattcccaacaaaccgaaatgtattcaatgatgctgattttgctGCGGCAGAAACGACGGATATAGAACTCCCTTCCGTATCGACTGCGTCACCTGCTGATACTATACCATCCACATCTGCTACATGTTTTATGGATTCAAGACCGAGACCATCTACCTCTACTGCACCTCTCTTAAACTCGGTTTCACCTACACCTACAGCTTCTGCGACTCTCGTGAATCCGATGCCATCGACTTCTGCTGCCTTCATTGATATGTCGTTATCAGCTTTAGTATCAACATCTGCCGCCCCGCCAACTCCTACCAAGTCGAAGAGTGTCCCTGATATGGTGTCACCAGCTGATATCATGCCAATTCCCAAGATAAACACGAATAAAAAAAGGGCTACTGACCGTCGCAGAGGAAAAACAGCAATCTTAACTTCATCACCCTACAAAAACGAATTGGTTAATAATAAAAACATCAAAACCGTTAATTTAAATATTGACCAACCTACTACAATAAATACTCGAAGCTTGAAACGATCCTCTAGACCAAAAACACAAAATAAACAAAACGTGCCAGTACTGCCAGTAACGAAGAAAAAAAAAAAGACAAACGCTAATGAGAATAATTGTATCTACTGTCTCGAAGAATATGGTGCTAGTCGTGTAAATGAAGGTTGGGTGCAATGCAGGGGCTGTAAACGCTGGGCTCATGATGGCTGCACCGGCTACGACTTGGAGGAGTTGATTGATTTTATGTGCAGGGCATGCATGGTGGCTCAGTGA
- Protein Sequence
- MPRKYQRTSNRQEWNSEDMKKAIKAVFDGNLGYKKAAQTYNVPKSTLQDRVNQFRQNNDLCASTQKGLGRFKPTFSSDQEDLLVEHVLTMERRLFGLTYKDLRRLAYQLAEANNIDHGFNKTYKLAGEDWLVGFMKRHPQLSLRAAEPTSIARAMGFNMTSVNNFFDLLEQVIDQYKFQCTRIYNVDETGLTTVPKQISRIIALKGKKQVGLASSAERGQLTTAVLCVSASGNYVPPLLIFPRVRMKAELLDGAPPGTVSVCHPSGWIQSEIFVEWLNHFISAVKPKKEDPVLLLLDGHSTHTKNLPLIEKARENGVVMLSFPPHCTHRLQPLDVSIMGPISTYYTQEVNTWLRNNPGRVVTQFQLARLFGSAYCKAATIQNAASGFSKTGIFPTNRNVFNDADFAAAETTDIELPSVSTASPADTIPSTSATCFMDSRPRPSTSTAPLLNSVSPTPTASATLVNPMPSTSAAFIDMSLSALVSTSAAPPTPTKSKSVPDMVSPADIMPIPKINTNKKRATDRRRGKTAILTSSPYKNELVNNKNIKTVNLNIDQPTTINTRSLKRSSRPKTQNKQNVPVLPVTKKKKKTNANENNCIYCLEEYGASRVNEGWVQCRGCKRWAHDGCTGYDLEELIDFMCRACMVAQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00356102; iTF_00356103; iTF_00356112; iTF_00008849; iTF_00356081; iTF_00008850; iTF_00008851;
- 90% Identity
- iTF_00356102; iTF_00356103; iTF_00356112; iTF_00008849; iTF_00356081; iTF_00008850; iTF_00008851;
- 80% Identity
- iTF_00356081;