Cfla014785.1
Basic Information
- Insect
- Coleophora flavipennella
- Gene Symbol
- -
- Assembly
- GCA_947284805.1
- Location
- OX369260.1:14426543-14427166[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.9e-12 1.4e-09 38.9 0.3 2 44 15 57 14 58 0.94 2 2 7.8 3.8e+03 -0.9 0.0 17 24 128 135 126 136 0.85
Sequence Information
- Coding Sequence
- atggcacgctataaagctaaagggattcgaggtaattggtcagaagcatcaatgaaacaagctttaactgcagtcaaaagcggtaagatgaaagtaaatacggctgcaaagcattataatgtaccaagacgtactctaaggcgttatttacaagagaaaaaggagacaaaatctactttgggccggaaaccacttcttgaccctgaacaagagaagattttagcatcccgtgttattcgcctgtgcaatgtgggatacccattgacacatcgtgtactgcgtagatgcgtaaagacattctgtgatcgaaataacacgtcaggtggagacttgatggtgggacgagattggctaagaggatttttaaaacgtcataggaatatcagcacacgaaaggcccaaaacctaaatcccgcaagggcgcaaaAGTTGAATAAAGCAGTCGTTTCTGATTATTTTGCTAAATTAAAAAAAGTCTTGGAAGATAATGACATTATGAATAAACCAGAACGCATTTTCAATATTGACGAAAAGGGTTGCCAACTTAATTACCAGAACCAGCTAAATCTAAATCTAAATCACCAGAAGTTTTGGCTGAACGTGGATCCAAGAGAGTACATTTAG
- Protein Sequence
- MARYKAKGIRGNWSEASMKQALTAVKSGKMKVNTAAKHYNVPRRTLRRYLQEKKETKSTLGRKPLLDPEQEKILASRVIRLCNVGYPLTHRVLRRCVKTFCDRNNTSGGDLMVGRDWLRGFLKRHRNISTRKAQNLNPARAQKLNKAVVSDYFAKLKKVLEDNDIMNKPERIFNIDEKGCQLNYQNQLNLNLNHQKFWLNVDPREYI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00358460;
- 90% Identity
- iTF_00358460;
- 80% Identity
- -