Cfla015618.1
Basic Information
- Insect
- Coleophora flavipennella
- Gene Symbol
- -
- Assembly
- GCA_947284805.1
- Location
- OX369259.1:13426705-13429128[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.6e-12 7.9e-10 39.7 0.1 2 40 18 56 17 61 0.85 2 2 8.1 3.9e+03 -1.0 0.0 12 21 771 780 769 783 0.87
Sequence Information
- Coding Sequence
- ATGACGCCACCTAGTTCTACGAGTAGAAGAAAAAGAGGGGAGTCGTGGGAAGAAGAAGGACTGAGAGCTGCAATTAATGCTGTGCAAAGAGGCCAACTCTCTCAGAGAATTGCATCTACAAGGTATAATATACCGCGACGTACTCTTAGGGATCATTTAAAAAATGGAAGCGTTACAAAACGTTTGGGACGGAAACCAATTTTTACAGAAAGACTGGAATCAGATTTGGCTGCAAGAATAAAAAGATTTGCAAAAATTGGAGTACCTCTTACACCAAAATTTATTAAAAAACAGGCTTTTCTCTTTTGTGAAAGATATGATATAAAAAATAACTTTAATGAAATGAAAAGGACAGCTGGTGCCGACTGGCTAAGACAGTTTTTAAAACGCAATCCATCAATTAGCAAAAGGAAGCCACAGATAATGAATCCAGGTCGGGCGCAAAAGTTAAACAAACCAATCGTTGAGCAACATTTTCAGGATGTGAAAAAATTGTATGATGAGTTGGACATCCTACAACATCCTGAGAGATTATATAATATGGACGAAAAGGGGTGTCGCACAACTATACACAAACAACAAACGGTGCTGGCTGAGAAGGGAAGTAAAAGGGTCCACCTCATCGCACCCGAACACGCAGAAAATGTGACGATTGCGATGTGTGTTAATGCCATCGGTACGGCTATCCCACCTATGATATTATTTAAAGGACAAAGACAAAGACCTGATTTAACAGAAAACCTACCAACTGGATCATTAGTACGAATGGCTCCGAAGGGTTCCATGACATCTGACTTATTTGTCGAATTTATTCAGCACCTAGGGAAATTCAAGGTTGCTGGAAAATGTTTATTGGTTTTCGATGGTGCTAAATGTCACCTCTCAAGCGAGGCACTTGATGAAGCAGACAAAAATGATATAGACTTGTACTGTCTCCCTTCTAACACTACGCATGAACTACAACCATTGGACAAATCAGTAAATAAGTCTTTTGAGCACCACTGGGACGATGCTGTCATGAATTATTTGTACGTTAACGCTGATAAAAAGATGACAAAAGCCACATTTAACCAAATATTTAGTCGTGTCTGGCCCAAATGTATGACACACAGCAATATAGTTAATGGTTTTAAGGCGACAGGTCTCTTTCCTTTTAATCCTGAGGCAATCCCGGAAGAAGCATATGCTCCTTCCATTTTAACCGAAATGATTTGCCCTTCAACCCGTGAGCAGCCCATGCAAGACTCAGGATCAGATGAAGACACTGGTAACCCATCGAAATCTTCACAAATTAACCCTTCAGCACGTGGGCAGCCTATGCAGGACTCAAGATCAGATGAAGACACTGGTAACCCATCGATTTCTGTACAAATTAACCCTTCAACTCGTGGACAACCTATGCAGGACTCAGGATTAGACGACGACACTGGTAGCCCCAGGGAAATTTCACGCTCTCCAACTTGTGAGCAACCCATGAGAAACACTCGATCAGAAGAATATACTGGTAACTTTCAGGATCTTTCAGTAGAATCAGAAGAAACCTTTGCAGACAATAGAAGAGTAAAATCCCGTCTTGTAGAGTATAGCTCATCTACTGAGTGTTCAGAAGGAGAAGAAGAAAAAATAAAGCAAGGAGATACTGTATATTGTGCTTCATCACCTTCTGTTTTACCAGATAATTTTTCAGGAGTACAAGCAGGTTGTTCAGGATTACAAAAATCTAACAGAGAAATAAGCCCCGTTTCTAGTATTGCAAGTTCTTTGTCAGATGTGGATTTTCTCCATCATCAAAATAACTCCAAACTTAAAGTTGCAGATGTATACAATTCATCTGAAGAAGAAAATGATTTTATCTATAAGGGATATACTACACCTAAAAAACAAACTATAAATAATTCATTGCAAGACATTAATAAAACAAATTCCGTAGGATCTACTTCCTCAGATGAAGACAATGTTCCATTAAACACATTAAAAAAACAAAATACTAAAACGCCATTTCATGAATTTCTGCCTACCCCTAATTATGCAACAATTAAAACCAAACAGCGTAAAAAAGCTATAAACTATAAAGGCCAAAGGATCACAAAGGAACTTTTTACAGAAAACAAAAATAAAAAAGAAAAGAAAGTAAAGAAGATGATCAAAACCAATAAAAAACAAAAAAAGGATTTAAAACATAATAAAAAGATAACAAACATTAAGAAAAAAACCAAAACGTGTAAGAAACCAAATATAAAAGAAAACAAAAAGAGGATTAACGATAAGGAAAATGACGATAATATAGAAGAGTGGTATTGCCACGCATGTTGTCAGAATGAAAAATTGTCAATGCGACAATGTGGTAATTGTAAAAAGTGGTACCATGAAGACTGTGTTGGTCTAACTAAAGATGATAAAGAATTTATTTGCTCTGATTGTTAA
- Protein Sequence
- MTPPSSTSRRKRGESWEEEGLRAAINAVQRGQLSQRIASTRYNIPRRTLRDHLKNGSVTKRLGRKPIFTERLESDLAARIKRFAKIGVPLTPKFIKKQAFLFCERYDIKNNFNEMKRTAGADWLRQFLKRNPSISKRKPQIMNPGRAQKLNKPIVEQHFQDVKKLYDELDILQHPERLYNMDEKGCRTTIHKQQTVLAEKGSKRVHLIAPEHAENVTIAMCVNAIGTAIPPMILFKGQRQRPDLTENLPTGSLVRMAPKGSMTSDLFVEFIQHLGKFKVAGKCLLVFDGAKCHLSSEALDEADKNDIDLYCLPSNTTHELQPLDKSVNKSFEHHWDDAVMNYLYVNADKKMTKATFNQIFSRVWPKCMTHSNIVNGFKATGLFPFNPEAIPEEAYAPSILTEMICPSTREQPMQDSGSDEDTGNPSKSSQINPSARGQPMQDSRSDEDTGNPSISVQINPSTRGQPMQDSGLDDDTGSPREISRSPTCEQPMRNTRSEEYTGNFQDLSVESEETFADNRRVKSRLVEYSSSTECSEGEEEKIKQGDTVYCASSPSVLPDNFSGVQAGCSGLQKSNREISPVSSIASSLSDVDFLHHQNNSKLKVADVYNSSEEENDFIYKGYTTPKKQTINNSLQDINKTNSVGSTSSDEDNVPLNTLKKQNTKTPFHEFLPTPNYATIKTKQRKKAINYKGQRITKELFTENKNKKEKKVKKMIKTNKKQKKDLKHNKKITNIKKKTKTCKKPNIKENKKRINDKENDDNIEEWYCHACCQNEKLSMRQCGNCKKWYHEDCVGLTKDDKEFICSDC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00356069; iTF_00356070;
- 90% Identity
- iTF_00356069; iTF_00356070;
- 80% Identity
- -