Cfla009867.1
Basic Information
- Insect
- Coleophora flavipennella
- Gene Symbol
- -
- Assembly
- GCA_947284805.1
- Location
- OX369297.1:4540927-4543515[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.1e-13 1e-10 42.5 0.1 1 40 12 51 12 55 0.86
Sequence Information
- Coding Sequence
- ATGGCTCTCTCAAAACCAAAACGCGCCACCTGGTCTGAAGACAACTTAGCAGCGGCTGTTGAGTCTATTCGTAATGGTTTGTCTTCTTATAAAGCAGCGGCTCATTATGGTATTCCAAGGAGAACTCTCAGAACTCATGTAGCAAATGGGATAGTTACCAAACGACTAGGAAGGCATACAATACTCACTACGGACCAAGAAAAAGATTTTGTCAGGCGAATAATAAAATTTTCAGAGCTTGGTATACCATTAACGCCAAAAATGATTAGGATTCAGGCATTTGCTTTTTGTAAAAAATTTCAAATACCCCACAATTTTAGTGAAGAAAAGGGGCTAGCTGGGAAAGGGTGGTTACGGCTATTTTTGAAAAGACATCCGGAGCTGGCGAAACGCAAAGCGCAATTTCTGAACCCGGCTCGAGCCCAAAAACTAAATAAAGCTATTGTCGCTCATCATTTCAAAGAAATTCTGAAACTGTACGATGAGCTCGATTTACATGACCATCCTGAAAGAATATACAACATGGATGAAAAGGGTTGTAGGCTAACATTACATCACCAGCAGGCAGTGGTCGCCCAAAAAGGTACCAAAAGGGTCCACATGCAGGTAGCTGAACATGGCGAAAATGTTACAATTGTTGGATGTGGAAATGCTTTAGGAAATCCAATACCTCCTATGATTCTTTTCAAAGGCAAAAGGAAGAGACCCGAGTATGACGAGAATCTACCCGCAGGATCAGTTGTGCACATGGCTCCAAAAGGTAGCATGACAACAGATATATTTGTTTTGTTTATTCAACACTTGGCCAAATTCAAGGCTTTTGGCAAATGTCTCCTAATTTTCGACGGCGCAAAAAGTCATTTAGACTTTCGCATTGCAGAGGAAGCAGAGAAAAACGATATAGTTTTGTATTGTCTGCCATCTAACACTACGCACGAGCTGCAGCCCATGGACAAATCGTGTTTTAAGCCATTTGAAACTTACTGGGATCAGGAAGTGTTGAAATTCCTGTATGAAAATCGAGCAAAATCTATAACAAAGAAACATTTTAATACAATTTTGAGTAGGGTATGGTCAAAATGTATGACCAATGCAAATATAACAAGCGGGTTCAGAGCCACGGGTCTTTACCCCCTGAATGAAAATGTTATACCGGAGACAGCTTTTGCACCGTCTATCTTAACTCAGCGCCCGACTTGTCCTGAAACTGAAAAATCTAATGAAACGTCTGCAGACTCTAATGACTCCCGAACTTCGTCACCAATTTCTACACTTCAAGAACTCCAAAATTTAATATCGTCAGAAAACCTGCCTACATCACCCAATACACCTGATCTTCAAGTACTACAAGCCTACTCTCCCACAAGCCACAAGTCAGTATTTGCGGATCAAGAAAATTATAAAAACCTTCCTGGGCCCAGTGGTTTGCAGACGAATCGTAGACGTCTTGTGAATTATAGTGACTCTGAAATAGACAGTTATTCTGAAATAGACAGTGATTCTGAAACTGAAATCATGAGCCAATTGATAAGAAGGCCTATTGAAACACGACGTTTAAGAATTTATTCATCTTCCAGTTCAGAAGCAGACCCAATCAGCATGCCTCAGCACTCTAATGCAAACCCACTGGAGCCAAATCTGCTACCACATTCTGAAACATTTCCTCAGAAAACTGTAAAATTAAGCGCACTACCTCAGAAGATGGGGTTGACCATTGCAAGCCCTCAACCCAAGGAAAGAGACCCGTTGAACGTAAGTCCACTTCCTCAGAAGATGGACCTGACGATCGCAAGCCCTCAACCCAAGGAAAGAGACCCGTTGAACTTAAACCCCCCACCTCAGAAGATGGACCTGACGATCGCAAGCCCTCAACCCAAGGAAAGACACCCGTTGAACGTAAACCCCCCACCTCAGAAGATGGACCTGACGATCGCAAGCCTTCAACCCAAGGAAAGAGACTCGTTGAGCTTAAACCCTCCACCTCAGAAGATGGACCTGCCGATCGGAAGTTTGCTACCTCAGATAGAAAAAGTACGGGACACAAGCCCAGTAAACATAATTGAGAGAATAAATGCGGAGAATTTGAAAACTGTGAGAAAAAAAGCCTTTATGTCTCGAAACTCATCAGACGAAGACGACGTCCCTTTATCTCAATTAAGTACAAAAACAGATTTCCAGAAATTTATGCCAACTCCAGACTATGGAGCTGTTAAAACTCAGCCACGTAAGAAGGCTTTAAACTACAAAGGTCAAAGAGTGACAAAAGATCTATTCAACAAGAAAGAGGAAGAAAAGAAAGTGGCAAAACCTATTGCAAAAAAGAAAATAGCAAAAAAAGTGCAACCAGAAAGAAAAGAAACCAAAAAGAAAGGCAATATTAAACTAAACGATAAATCTACAAAGAAGAAAACCATAACAGGAAAGAAATCCAAAAAGAACGAAGAACGTTGGTATTGTCATGCATGTCATGAAGAAAAAGTGGAGGATATGAGACCATGCATTAACTGTCATAAATGGTTTCACGAATCTTGCATTGGCTTGACAAAAAATGATTTAGATGCCTTTGTGTGTCCCGATTGTGATGTTTAG
- Protein Sequence
- MALSKPKRATWSEDNLAAAVESIRNGLSSYKAAAHYGIPRRTLRTHVANGIVTKRLGRHTILTTDQEKDFVRRIIKFSELGIPLTPKMIRIQAFAFCKKFQIPHNFSEEKGLAGKGWLRLFLKRHPELAKRKAQFLNPARAQKLNKAIVAHHFKEILKLYDELDLHDHPERIYNMDEKGCRLTLHHQQAVVAQKGTKRVHMQVAEHGENVTIVGCGNALGNPIPPMILFKGKRKRPEYDENLPAGSVVHMAPKGSMTTDIFVLFIQHLAKFKAFGKCLLIFDGAKSHLDFRIAEEAEKNDIVLYCLPSNTTHELQPMDKSCFKPFETYWDQEVLKFLYENRAKSITKKHFNTILSRVWSKCMTNANITSGFRATGLYPLNENVIPETAFAPSILTQRPTCPETEKSNETSADSNDSRTSSPISTLQELQNLISSENLPTSPNTPDLQVLQAYSPTSHKSVFADQENYKNLPGPSGLQTNRRRLVNYSDSEIDSYSEIDSDSETEIMSQLIRRPIETRRLRIYSSSSSEADPISMPQHSNANPLEPNLLPHSETFPQKTVKLSALPQKMGLTIASPQPKERDPLNVSPLPQKMDLTIASPQPKERDPLNLNPPPQKMDLTIASPQPKERHPLNVNPPPQKMDLTIASLQPKERDSLSLNPPPQKMDLPIGSLLPQIEKVRDTSPVNIIERINAENLKTVRKKAFMSRNSSDEDDVPLSQLSTKTDFQKFMPTPDYGAVKTQPRKKALNYKGQRVTKDLFNKKEEEKKVAKPIAKKKIAKKVQPERKETKKKGNIKLNDKSTKKKTITGKKSKKNEERWYCHACHEEKVEDMRPCINCHKWFHESCIGLTKNDLDAFVCPDCDV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00161466;
- 90% Identity
- iTF_00356065; iTF_00161467; iTF_00162434; iTF_00161466; iTF_00161468; iTF_00161469; iTF_00162435; iTF_00162436; iTF_00162437; iTF_00162438; iTF_00162439; iTF_01531890; iTF_01531891; iTF_01531892;
- 80% Identity
- -