Cfla020365.1
Basic Information
- Insect
- Coleophora flavipennella
- Gene Symbol
- -
- Assembly
- GCA_947284805.1
- Location
- OX369257.1:18550677-18552344[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.2e-13 6e-11 43.3 0.1 1 40 12 51 12 55 0.86
Sequence Information
- Coding Sequence
- ATGGCTCTCTCAAAACCAAAACGCGCCACCTGGTCTGAAGACAACTTAGCAGCGGCTGTTGAGTCTATTCGTAATGGTTTGTCTTCTTATAAAGCAGCGGCTCATTATGGTATTCCAAGGAGAACTCTCAGAACTCATGTAGCAAATGGGATAGTTACCAAACGACTAGGAAGGCATACAATACTCACTACGGACCAAGAAAAAGATTTTGTCAGGCGAATAATAAAATTTTCAGAGCTTGGTATACCATTAACGCCAAAAATGATTAGGATTCAGGCATTTGCTTTTTGTAAAAAATTTCAAATACCCCACAATTTTAGTGAAGAAAAGGGGCTAGCTGGGAAAGGGTGGTTACGGCTATTTTTGAAAAGACATCCGGAGCTGGCGAAACGCAAAGCGCAATTTCTGAACCCGGCTCGAGCCCAAAAACTAAATAAAGCTATTGTCGCTCATCATTTCAAAGAAATTCTGAAACTGTACGATGAGCTCGATTTACATGACCATCCTGAAAGAATATACAACATGGATGAAAAGGGTTGTAGGCTAACATTACATCACCAGCAGGCAGTGGTCGCCCAAAAAGGTACCAAAAGGGTCCACATGCAGGTAGCTGAACATGGCGAAAATGTTACAATTGTTGGATGTGGAAATGCTTTAGGAAATCCAATACCTCCTATGATTCTTTTCAAAGGCAAAAGGAAGAGACCCGAGTATGACGAGAATCTACCCGCAGGATCAGTTGTGCACATGGCTCCAAAAGGTAGCATGACAACAGATATATTTGTTTTGTTTATTCAACACTTGGCCAAATTCAAGGCTTTTGGCAAATGTCTCCTAATTTTCGACGGCGCAAAAAGTCATTTAGACTTTCGCATTGCAGAGGAAACAGAGAAAAACGATATAGTTTTGTATTGTCTGCCATCTAACACTACGCACGAGCTGCAGCCCATGGACAAATCGTGTTTTAAGCCATTTGAAACTTACTGGGATCAGGAAGTGTTGAAATTCCTGTATGAAAATCGAGCAAAATCTATAACAAAGAAACATTTTAATACAATTTTGAGTAGGGTATGGTCAAAATGTATGACCAATGCAAATATAACAAGCGGGTTCAGAACCACGGGTCTTTACCCCCTGAATGAAAATGTTATACCGGAGACAGCTTTTGCACCGTCTATCTTAACTCAGCGCCCGACTTGTCCTGAAACTGAAAAATCTAATGAAACGTCTAATGACTCCCGAACTTCGTCACCAATTTCTACACTTCAAGAACTCCAAAATTTAATATCGTCAGAAAACCTGCCTACATCACCCAATACACCTGATCTTCAAGTACTACAAGCCTACTCTCCCACAAGCCACAAGTCAGTATTTGCGGATCAAGAAAATTATAAAAACCTTCCTGGGCCCAGTGGTTTGCAGACGAATCGTAGACGTCTTGTGAATTATAGTGACTCTGAAATAGACAGTTATTCTGAAATAGACAGTGATTCTGAAACTGAAATCATGAGCCAATTGATAAGAAGGCCTATTGAAACACGACGTTTAAGAATTTATTCATCTTCCAGTTCAGAAGCAGACCCAATCAGCATGCCTCAGCACTCTAATCAAACCCACTGGAGCCAAATCTGCTACCACATTCTGAAACATTTCCTCAGAAAACTGTAA
- Protein Sequence
- MALSKPKRATWSEDNLAAAVESIRNGLSSYKAAAHYGIPRRTLRTHVANGIVTKRLGRHTILTTDQEKDFVRRIIKFSELGIPLTPKMIRIQAFAFCKKFQIPHNFSEEKGLAGKGWLRLFLKRHPELAKRKAQFLNPARAQKLNKAIVAHHFKEILKLYDELDLHDHPERIYNMDEKGCRLTLHHQQAVVAQKGTKRVHMQVAEHGENVTIVGCGNALGNPIPPMILFKGKRKRPEYDENLPAGSVVHMAPKGSMTTDIFVLFIQHLAKFKAFGKCLLIFDGAKSHLDFRIAEETEKNDIVLYCLPSNTTHELQPMDKSCFKPFETYWDQEVLKFLYENRAKSITKKHFNTILSRVWSKCMTNANITSGFRTTGLYPLNENVIPETAFAPSILTQRPTCPETEKSNETSNDSRTSSPISTLQELQNLISSENLPTSPNTPDLQVLQAYSPTSHKSVFADQENYKNLPGPSGLQTNRRRLVNYSDSEIDSYSEIDSDSETEIMSQLIRRPIETRRLRIYSSSSSEADPISMPQHSNQTHWSQICYHILKHFLRKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00208778;
- 90% Identity
- iTF_00035572;
- 80% Identity
- -