Cfla022649.1
Basic Information
- Insect
- Coleophora flavipennella
- Gene Symbol
- -
- Assembly
- GCA_947284805.1
- Location
- OX369263.1:5053524-5054486[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.9e-14 2.9e-11 44.3 0.1 1 41 12 52 12 55 0.86
Sequence Information
- Coding Sequence
- ATGGCTCTCTCAAAACCAAAACGCGCCACCTGGTCTGAAGACAACTTAGCAGCGGCTGTTGAGTCTATTCGTAATGGTTTGTCTTCTTATAAAGCAGCGGCTCATTATGGTATTCCAAGGAGAACTCTCAGAACTCATGTAGCAAATGGGATAGTTACCAAACGACTAGGAAGGCATACAATACTCACTACGGACCAAGAAAAAGATTTTGTCAGGCGAATAATAAAATTTTCAGAGCTTGGTATACCATTAACGCCAAAAATGATTAGGATTCAGGCATTTGCTTTTTGTAAAAAAATTCAAATACCCCACAATTTTAGTGAAGAAAAGGGGCTAGCTGGGAAAGGGTGGTTACGGCTATTTTTGAAAAGACATCCGGAGCTGGCGAAACGCAAAGCGCAATTTCTGAACCCGGCTCGAGCCCAAAAACTAAATAAAGCTATTGTCGCTCATCATTTCAAAGAAATTCTGAAACTGTACGATGAGCTCGATTTACATGACCATCCTGAAAGAATATACAACATGGATGAAAAGGGTTGTAGGCTAACATTACATCACCAGCAGGCAGTGGTCGCCCAAAAAGGTACCAAAAGGGTCCACATGCAGGTAGCTGAACAAGGCGAAAATGTTACAATTGTTGAATGTGGAAATGCTTTAGGAAATCCAATACCTCCTATGATTCTTTTCAAAGGCAAAAGGAAGAGACCCGAGTATGACGAGAATCTACCCGCAGGATCAGTTGTGCACATGGCTCCAAAAGGTAGCATGACAACAGATATATTTGTTTTGTTTATTCAACACTTGGCCAAATTCAAGGCTTTTGGCAAATGTCTCCTAATTTTCGACGGCGCAAAAAGTCATTTAGACTTTCGCATTGCAGAGGAAGCAGATAAAAACGATATAGTTTTGTATTGTCTGCCATCTAACGCACGAGCTGCAGCCCATGGACAAATCGTGTTTTAA
- Protein Sequence
- MALSKPKRATWSEDNLAAAVESIRNGLSSYKAAAHYGIPRRTLRTHVANGIVTKRLGRHTILTTDQEKDFVRRIIKFSELGIPLTPKMIRIQAFAFCKKIQIPHNFSEEKGLAGKGWLRLFLKRHPELAKRKAQFLNPARAQKLNKAIVAHHFKEILKLYDELDLHDHPERIYNMDEKGCRLTLHHQQAVVAQKGTKRVHMQVAEQGENVTIVECGNALGNPIPPMILFKGKRKRPEYDENLPAGSVVHMAPKGSMTTDIFVLFIQHLAKFKAFGKCLLIFDGAKSHLDFRIAEEADKNDIVLYCLPSNARAAAHGQIVF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00162432; iTF_00356060; iTF_00356071;
- 90% Identity
- iTF_00356071;
- 80% Identity
- -