Basic Information

Insect: Coleophora deauratella
Gene Symbol: -
Assembly: GCA_958295455.1
Location: OY282404.1:582447-587502[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 9.4 1.1e+03 1.6 4.0 1 23 291 313 291 313 0.92

2 8 1.4 1.6e+02 4.2 0.1 6 23 325 343 325 343 0.93

3 8 0.025 2.9 9.7 0.1 1 23 353 376 353 376 0.94

4 8 1.2e-05 0.0014 20.2 5.5 3 23 404 424 402 424 0.97

5 8 0.0002 0.023 16.3 4.4 1 23 430 453 430 453 0.96

6 8 0.00048 0.056 15.1 0.8 1 23 459 481 459 481 0.98

7 8 7.9e-05 0.0091 17.6 0.8 3 23 489 509 487 509 0.97

8 8 1.9e-05 0.0022 19.6 5.3 1 23 515 537 515 537 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	9.4	1.1e+03	1.6	4.0	1	23	291	313	291	313	0.92
2	8	1.4	1.6e+02	4.2	0.1	6	23	325	343	325	343	0.93
3	8	0.025	2.9	9.7	0.1	1	23	353	376	353	376	0.94
4	8	1.2e-05	0.0014	20.2	5.5	3	23	404	424	402	424	0.97
5	8	0.0002	0.023	16.3	4.4	1	23	430	453	430	453	0.96
6	8	0.00048	0.056	15.1	0.8	1	23	459	481	459	481	0.98
7	8	7.9e-05	0.0091	17.6	0.8	3	23	489	509	487	509	0.97
8	8	1.9e-05	0.0022	19.6	5.3	1	23	515	537	515	537	0.98

Sequence Information

Coding Sequence: atggaTAATGCGACGGAGCAGATATTTATAGTGGCTCCCGCCTCGAATGCTACGTGTGTTGCGTCGCAGAAGATCATGGAGGTGCCTCCGAATGCACCAGTTAACCTCGATAATGTAGAGGACCTGTCCAATGTGTGCCGGGTGTGTGCTACCGTCACAGAGTTCCTGATCCCCATCTTCCACGGGGAGGGTCTGCAGAACAACCTAGCCGACAAGATTCACCAACACCTACCTATACAAGTGACAGAGCAGGATGAGCTGCCGCGGGCGGTGTGCTACCAGTGCGCGCACACGCTGCTGGCGTGGCACGAGCTGGCCGCGTGCTGCGCGCACGCCGACCGCGCGCTGCGGGCCCGCCTGCCCCGCCCGCAGCCCCGCCCGCCGCCACGCACGCACTGCCCGGTAACTACTGTGACAGGTGACAGAGCGCAGGCCGACCGCGCGCTGCGGGCGCGGCTGCCCCGCCCGCAGCCCCGCCCGCCCCGCCCGCCGCCACGCACGCACTGCCCGGAACAAAAACCAGCTGCAAATGAAGAATGCCAAAATTTAGAGAATAAGGAAGATGAGTCTGGCAAGTCAAATATTGATGGAatcattaaaaatgcattagCAGTATACTTTAGTGCGCAAAATATTGACACTGAAAACTCGAATCTAGATATTATTTGTGAGAAATGTCCAGAGAGTACCATTTCTCCGTCTATTACAAGTTTAGCCAAGCATTTGAAACATCACTCAATTGAAGAAGACTGCATGAAACTGATCGAAAACTTCGTAACTGATAACATCACCTTCGAAGAGAGGTTGCACTATTCAGATGATGATGAAAGTTCAAATGATATTCAACTAAAAGAAGTTTCTCTCCCAAAATTCAGCTGTCCATTCTGTAGCAGTATGTTTACGTCAGTGACTCGTCTTTATTGCCATCTTAACAAACATTTGGAGATAAATTTTGATAAAGGAGTCTCTTGCTGTGATGTTCTTTTCAAAGACCAGAAAACTCTAGGTGCGCATTTGAAAGAAATGCATGTTGTGAAAGATCTTGACGATGCTCCGTTTACATGTCGGGCTTGTGGCCTCCGAACTGACACTGAGGACGACTTGAAAGAACACATAAGTGCTAATCATACAGAAGACTAcgctaaaaataaaactgctgACACTAAAAAGAAACGCAGCAAAAACGATCAGAAATACATAAAAGTGAACTGTCCAGAGTGCCACAAAACTTTCTCGAACAAATACCATATGCGCCTACATCTGAAGAGACATATCAACAGCGAGAGACATCACTGCGATAAATGCGATAAAAGTTACACAACCAAAACTAGTCTTGACGTTCACAAAAGAGTGGTCCACGACGGAGTGCTTAAGTTCGTCTGTCAGTTTTGTGGAGAAGCGTTTGGCACCAAACACGAGCGCGAAGCGCATGCGCGGAAGCACACGGGACAGGCGCCCTTCGGCTGTGACACCTGCGCCAAAACCTTTCGCGACAGAGCCACGCTTCAACGCCACAGAGAAATGCATTTAAACATAAGAAAATACCAATGTGAGACCTGCTCGAAACGGTTCCGGAAAACCTCCCATTTGAAAGCCCATCTCAAACAACACACGAACGAAAGATCAGTGGAGTAA
Protein Sequence: MDNATEQIFIVAPASNATCVASQKIMEVPPNAPVNLDNVEDLSNVCRVCATVTEFLIPIFHGEGLQNNLADKIHQHLPIQVTEQDELPRAVCYQCAHTLLAWHELAACCAHADRALRARLPRPQPRPPPRTHCPVTTVTGDRAQADRALRARLPRPQPRPPRPPPRTHCPEQKPAANEECQNLENKEDESGKSNIDGIIKNALAVYFSAQNIDTENSNLDIICEKCPESTISPSITSLAKHLKHHSIEEDCMKLIENFVTDNITFEERLHYSDDDESSNDIQLKEVSLPKFSCPFCSSMFTSVTRLYCHLNKHLEINFDKGVSCCDVLFKDQKTLGAHLKEMHVVKDLDDAPFTCRACGLRTDTEDDLKEHISANHTEDYAKNKTADTKKKRSKNDQKYIKVNCPECHKTFSNKYHMRLHLKRHINSERHHCDKCDKSYTTKTSLDVHKRVVHDGVLKFVCQFCGEAFGTKHEREAHARKHTGQAPFGCDTCAKTFRDRATLQRHREMHLNIRKYQCETCSKRFRKTSHLKAHLKQHTNERSVE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -