Cdea038630.3
Basic Information
- Insect
- Coleophora deauratella
- Gene Symbol
- ZFX
- Assembly
- GCA_958295455.1
- Location
- OY282417.1:1870617-1887163[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.35 40 6.1 1.0 1 23 227 249 227 249 0.96 2 15 0.053 6.2 8.7 1.1 1 23 283 305 283 305 0.95 3 15 0.0023 0.27 13.0 0.7 1 23 310 333 310 333 0.98 4 15 0.018 2.1 10.2 0.3 1 23 337 360 337 360 0.96 5 15 5.5 6.3e+02 2.4 0.6 3 21 374 392 373 397 0.87 6 15 0.75 87 5.1 1.5 1 23 433 456 433 456 0.96 7 15 3.9e-05 0.0045 18.6 1.0 1 23 471 493 471 493 0.96 8 15 0.0066 0.77 11.6 0.5 1 16 499 514 499 516 0.90 9 15 0.0047 0.55 12.0 0.4 1 16 680 695 680 697 0.90 10 15 9.9 1.1e+03 1.6 0.5 2 15 702 717 702 720 0.82 11 15 0.0047 0.55 12.0 0.4 1 16 746 761 746 763 0.90 12 15 9.9 1.1e+03 1.6 0.5 2 15 768 783 768 786 0.82 13 15 4.9e-06 0.00057 21.4 3.6 1 23 812 834 812 834 0.99 14 15 6.4e-07 7.3e-05 24.2 1.1 1 23 841 863 841 863 0.99 15 15 0.00047 0.055 15.2 4.4 1 23 869 892 869 892 0.92
Sequence Information
- Coding Sequence
- atgCTCTCCATTAGAAAtgtaaaatcaataaaaacatcaaATCTCGATTTAAATTCTTGTCTCAAAACGAAACACATCAAGCCCAATAGTTAcgataaacaaataaatgaCAGCAAACTTATTGTCAaagttaaaattgaaaaatgcaaTGAGATCAACAGAAATAGTGATGAAGATGACGATGACGATTTTGATGACACGATACCTCTAGCGCAAGTTTCTAATCACGATACAAAAGAGATGAAAGTTAAAAAAGATTCTGATGACATTGATGatcaaactgatgaagaaaTGCCACATGTACCTATAGTTGAAGTTGAAATCAAGGGTGAGAAGACTGATGATTTCTTCCTCGAAGAGAACGGTAGCgatattgattttgatgattccaATAATGATGTTAAGGTGAAGAGAAAAACTGTAACGAAGAAGAAAAAAGAGAGGAAGCCACGTGCGAAGAAGAAGGAGAAAAAAACTAGTGCTAAAGCTAAGAAAGCTAAAGTTGAAAAGGAAACAAAGCCTGCTTCTACAGTGGCtccaagAAAGAGCGAAAGAGAAAAACGGACACCAGAGGAGCCCCTAGACGAAAGCATGTTCACAATTACTAAATTGTCGTTCGATGATCAAATAGCCGAAGTGGAAAAGAGAAAGGAAACCAGCGCTTATATAGACGCTCCGTTCAAATGTACCATCTGTTATCGCGGGTACTACGCCAAGGATAGATATGACATTCATATGGTCAAACATAGCGAGGTAATCGGCGCGCTGCAGTGCTTCATCTGCAAGTTCCGCATGAAATGTGCCCGCGCACTGCGCAAGCATATCTACGCGCAACACACGTATCACTTCAAATGCAACAAGTGCCCCTACGTCACTAAGACCAGGTCAATAGCGAGGGAGCACCAGAAATGGCACACCGGAGCAAGGTACCAATGTCCCCGATGTCCGAGGAACTTCGGCAAATACACATCATACATGGGCCACATCCGCATAAAGCACGCGTCTGACTTCGTCTGCGAGCTTTGCGGGTTTACCTTCGTCAGCGAGAAAGGGATAGATGTACACAAGAAGACGAAACACCGGCTGCATGATAAGAATACGCCGCTGGAAGGCCCGTTCTGTGACGTGTGCAACGTTCGGTTCATATCTGAGGAAGCGCACCTGAGACATCTGAAGGTTTCCTCCAAACACATCAGCGACGACGATCCTAACCGCTTGCACAATGACTCTGTGAGCATGAAGATAGAGAGGACGCGGCGGCGGCCGGGCGAAGCGGCCGCCTCTGAGGGCATCACTCACACTTGCGAGGAGTGCGGAGTCCCACTACACGGGCTGCGAGCGTACAACCAGCATCTGAAGAAATACCACCCCGACAAGCACAAAGCGAGCTACCCGCCAAGCAGCAAGCCCTTCATGTGCGAGCAGTGCGGCAAGATATTCAGCCACATCAACTACCTGACGGCGCACATGTACGCACACACCGGCGAGAAGGCGTTCAAGTGCGACCAGTGCGACAAGAGCTTCGCGCACAAGATCACGCTGGATACACCGCGAGAAGGCGTTCAAGTGCGACCAGTGCGACAAGAGCTTCGCGCACAAGATCACGCTGGTGAGTGCGCCAGTGCGACAGTGCGCACTGTGGTGCTTGTTATAGTAGCTATACAGGATACACCGCGAGAAGGCGTTCAAGTGCGACCAGTGCGACAAGAGCTTCGCGCACAAGATCACGCTGGTGAGTGCGCCAGTGCGACAGTGCGCACTGTGGTGCTTGTTATAGTAGCTATACAGGATACACCGCGAGAAGGCGTTCAAGTGCGACCAGTGCGACAAGAGCTTCGCGCACAAGATCACGCTGGTGAGTGCGCCAGTGCGACAGTGCGCACTGTGGTGCTTGTTATAGTAGCTATACAGGATACACCGCGAGAAGGCGTTCAAGTGCGACCAGTGCGACAAGAGCTTCGCACACAAGATCACGCTGGTGAGTGCGCCAGTGCGCCAGTGCGACAGTGCGCACTGTGGATACACCGCGAGAAGGCGTTCAAGTGCGACCAGTGCGACAAGAGCTTCGCGCACAAGATCACGCTGGTGAGTGCGCCAGTGCGCCAGTGCGACAGTGCGCACTGTGGTGCTTGTTATAGTAGCTATACAGGATACACCGCGAGAAGGCGTTCAAGTGCGACCAGTGCGACAAGAGCTTCGCGCACAAGATCACGCTGGATACACCGCGAGAAGGCGTTCAAGTGCGACCAGTGCGACAAGAGCTTCGCGCACAAGATCACGCTGGTGAGTGAGCCAGTGCGCCAGTGCGACAGTGCGCACTGTGGTGCTTGTTATAGTAGCTATACAGGATACACCGCGAGAAGGCGTTCAAGTGCGACCAGTGCGACAAGAGCTTCGCGCACAAGATCACGCTGGATACACCGCGAGAAGGCGTTCAAGTGCGACCAGTGCGACAAGAGCTTCGCGCACAAGATCACGCTGACGATCCACAAGCGGACACACAGCGACACTCCCCCATCGTACGAGTGTCCGATATGCGGACGACATTTCTCCGAGCCCAACAACCGGCGACGACATATGCGGatcCACACAGGCGAGAAACCATACAAATGCGAGTACTGCGAGAAATGCTTCACTTCTTCATCAGAGAAGCGAGCCCACGTGGACCACGTGCACCTGAAGAAGCCGTGGCCCAAGCGGGCGCGGGCCGCGCGCCCCGCCGCCGCGTGGCGGCCGCCAGGCCCCGTAGATGGGGACGACCTCCGTTGA
- Protein Sequence
- MLSIRNVKSIKTSNLDLNSCLKTKHIKPNSYDKQINDSKLIVKVKIEKCNEINRNSDEDDDDDFDDTIPLAQVSNHDTKEMKVKKDSDDIDDQTDEEMPHVPIVEVEIKGEKTDDFFLEENGSDIDFDDSNNDVKVKRKTVTKKKKERKPRAKKKEKKTSAKAKKAKVEKETKPASTVAPRKSEREKRTPEEPLDESMFTITKLSFDDQIAEVEKRKETSAYIDAPFKCTICYRGYYAKDRYDIHMVKHSEVIGALQCFICKFRMKCARALRKHIYAQHTYHFKCNKCPYVTKTRSIAREHQKWHTGARYQCPRCPRNFGKYTSYMGHIRIKHASDFVCELCGFTFVSEKGIDVHKKTKHRLHDKNTPLEGPFCDVCNVRFISEEAHLRHLKVSSKHISDDDPNRLHNDSVSMKIERTRRRPGEAAASEGITHTCEECGVPLHGLRAYNQHLKKYHPDKHKASYPPSSKPFMCEQCGKIFSHINYLTAHMYAHTGEKAFKCDQCDKSFAHKITLDTPREGVQVRPVRQELRAQDHAGECASATVRTVVLVIVAIQDTPREGVQVRPVRQELRAQDHAGECASATVRTVVLVIVAIQDTPREGVQVRPVRQELRAQDHAGECASATVRTVVLVIVAIQDTPREGVQVRPVRQELRTQDHAGECASAPVRQCALWIHREKAFKCDQCDKSFAHKITLVSAPVRQCDSAHCGACYSSYTGYTARRRSSATSATRASRTRSRWIHREKAFKCDQCDKSFAHKITLVSEPVRQCDSAHCGACYSSYTGYTARRRSSATSATRASRTRSRWIHREKAFKCDQCDKSFAHKITLTIHKRTHSDTPPSYECPICGRHFSEPNNRRRHMRIHTGEKPYKCEYCEKCFTSSSEKRAHVDHVHLKKPWPKRARAARPAAAWRPPGPVDGDDLR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -