Cdea036019.1
Basic Information
- Insect
- Coleophora deauratella
- Gene Symbol
- -
- Assembly
- GCA_958295455.1
- Location
- OY282414.1:2233740-2242081[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0022 0.25 13.1 3.8 1 23 382 404 382 404 0.98 2 9 0.00076 0.088 14.5 0.8 1 23 445 468 445 468 0.96 3 9 3.1 3.5e+02 3.2 0.4 2 23 474 495 474 495 0.86 4 9 2e-06 0.00023 22.6 4.7 1 23 503 525 503 525 0.98 5 9 0.00018 0.021 16.5 0.3 3 23 532 552 531 552 0.98 6 9 0.00039 0.045 15.4 2.6 1 23 561 583 561 583 0.98 7 9 1.5e-06 0.00017 23.0 0.4 1 23 589 612 589 612 0.96 8 9 0.16 18 7.2 0.2 1 10 618 627 618 632 0.95 9 9 0.00024 0.028 16.1 0.8 1 23 649 672 649 672 0.96
Sequence Information
- Coding Sequence
- ATGTTACATAACAGTGGGCCTTATGGGCCGAATGAAACACCTATTAACACTGGAACTTCTGTGAATTTTACACCAATATCTACGCCTATGAGCCTCGGTCAAAACTTGGATAATTTGGATAAAAATCTTCAACAATCGCATCAAACAGAAGGCGAGCATTACCACCTACCTGATTACTCCCCGTATAGATCACCTGCTCTAAATGTGCCAACGCAAATGAGTCCTTTTCAAAGTTATCAGTCTGGTACTATTCAACCAAACTATTTGGTACAAAATACTGAATTATCAAACAATCCCAGTTGGCAAAATGGTATGTACCCACAAACGAATCTAAGGTCAAACATGTCGGCCTGCACTGTAAATTATGAGAAAGATACTCGTAAGTCTGTTACACATCAAGAATTTGAGACAGAAATGATATATCCAAAAACTATGCCCATTACCATACCGCAAGTACCCATTAGACCATTCCAAAATGTAAATAACGATGCCAACTATAGTTTGTACAatgtaaataaagataaatttaataattttaataacagtTTGGATTTAAAGTCGAAAGAAAGACCATTACTTGATAGTAATAAGAGAAAAAGTTTAGAAAATACTGTCAGAATAATAGAAAACATTCTTGAGAAGACAACAAGAAATAAACAACTAGAAAAAGAAGCTACTGATGTTGAAAAAAAtgtcaacaaaaatatttttaagctaAAGGACAATTTTAAACAGAATCAAGTTAGTACTAATGCAAATAAAACTCTTGATAATAGTgaaaattttgaacaaaaatcAAATTTGGATACAATAATTCAACCTGAAGATTTGATTAAAGAAACAAATTTGAATGCTGATAAAGATGTTGAACCGATTCAAGTTTCAACGGAATCcaaaaaagaaacagaaaataCTGATTTAATCGACAATTTACAAGTGAAAGTTGAAATTGAGGATGCACCAACCGTTGTTGTTAAAGTTGAGCAAATGGACTGCACGGATTCAGAGTTTGGGAACCCATTTCAAAAAGACACAAATGGAATTGCGAGAGAGGATTTGGGTGACCGAGTCTTTATTGATGGGGATAGCAGTGTTGATGTTGCAATCTCAGAtataaaaaatgCTATCGCTTCCAATGCCTATTACGAATGTCCTCACTGCAACCTCTGTTTCGAACAACCGAAACGGTTTCTCATTCATTACAAATGGCATTCATTTGGTGCAATGAAAAATAAACGCCCAGATATTTTTAAGAAGAAGGAAATCAAACGTGTACAGACAAAACCTAAGGAAGAAGATAAGAGTTTGAAAGAAGATGAAGAACCAAAGAAATTTCCGTGTAAAGATTGCAGTGAAGAATTCTTATCTAAGAGCAGTTTGAAGAACCACAGGCTAAAGGCCCACTCAAATCACGCACGAGAATGCAAGATATGCAATAAGCAGATATTCGGGTATATGGCAATGAAGTCGCATCGGGCCTCACATAACAAGGATAAAGGCCCCAGCTTCCAATGCCCCGATTGCGATAAGATATTCAGGCATAAACACACGCTGGCCAAACATAGGGATACGCATTTGGAGAAAACAGTGGCCTGCGAGCAATGTCCAAAGAAGTTTGGCTCGGTGAACCAGCTCAAGCTGCACATGAAGGTGCACGAGAGAGCGGAGAGGGGTCCGTTGCACCAATGCAGCTTCTGCACTAAGGCATTTTATGAGACTTATAACTTACAGGTCCACGAAAGGGTCCACCGCAACGAGCGCCCGTTCGCCTGCGAGATCTGCAGCACTGGTTTCGTCACCAACTCCAGTCTCAAGCGGCATATGAAAGTTTCCCACAGCTCACAAAAGCCGTACGAGTGCTCGCATTGCCACCGCAGCTTCCTTTCGGCAGCGACGCGCGACGGGCACGAAGCTCGCACTCACGGCGATCCGGCGCTGCTGAAGTTTGTCTGCGAGCTGTGTGACAACAGgtaCCCCAAACAAAAGGATCTTCAGAAGCACATGTACAAAGTGCATGCGAAATGCAAAACCAAAAGAAAGAAATTGAAAAACGAAGCGAACGTAAGCGACactgaatag
- Protein Sequence
- MLHNSGPYGPNETPINTGTSVNFTPISTPMSLGQNLDNLDKNLQQSHQTEGEHYHLPDYSPYRSPALNVPTQMSPFQSYQSGTIQPNYLVQNTELSNNPSWQNGMYPQTNLRSNMSACTVNYEKDTRKSVTHQEFETEMIYPKTMPITIPQVPIRPFQNVNNDANYSLYNVNKDKFNNFNNSLDLKSKERPLLDSNKRKSLENTVRIIENILEKTTRNKQLEKEATDVEKNVNKNIFKLKDNFKQNQVSTNANKTLDNSENFEQKSNLDTIIQPEDLIKETNLNADKDVEPIQVSTESKKETENTDLIDNLQVKVEIEDAPTVVVKVEQMDCTDSEFGNPFQKDTNGIAREDLGDRVFIDGDSSVDVAISDIKNAIASNAYYECPHCNLCFEQPKRFLIHYKWHSFGAMKNKRPDIFKKKEIKRVQTKPKEEDKSLKEDEEPKKFPCKDCSEEFLSKSSLKNHRLKAHSNHARECKICNKQIFGYMAMKSHRASHNKDKGPSFQCPDCDKIFRHKHTLAKHRDTHLEKTVACEQCPKKFGSVNQLKLHMKVHERAERGPLHQCSFCTKAFYETYNLQVHERVHRNERPFACEICSTGFVTNSSLKRHMKVSHSSQKPYECSHCHRSFLSAATRDGHEARTHGDPALLKFVCELCDNRYPKQKDLQKHMYKVHAKCKTKRKKLKNEANVSDTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -