Cdea035207.1
Basic Information
- Insect
- Coleophora deauratella
- Gene Symbol
- -
- Assembly
- GCA_958295455.1
- Location
- OY282412.1:10486349-10491395[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.42 48 5.9 1.6 1 23 249 272 249 272 0.95 2 17 0.028 3.2 9.6 2.6 2 23 281 302 280 302 0.97 3 17 5.1 5.9e+02 2.5 0.9 2 19 306 322 305 327 0.69 4 17 0.033 3.8 9.4 2.7 2 21 349 368 348 369 0.93 5 17 0.00066 0.076 14.7 0.2 1 23 400 423 400 423 0.96 6 17 0.0083 0.96 11.3 0.2 1 23 428 451 428 451 0.97 7 17 0.00048 0.055 15.1 0.4 1 20 455 474 455 476 0.95 8 17 0.0091 1 11.1 0.2 2 23 485 507 484 507 0.90 9 17 0.013 1.5 10.6 3.8 1 23 510 533 510 533 0.94 10 17 0.00012 0.014 17.0 0.3 2 23 547 568 546 568 0.97 11 17 0.068 7.9 8.4 1.2 1 23 572 595 572 595 0.96 12 17 5.6e-05 0.0064 18.1 0.3 2 23 618 639 617 639 0.96 13 17 0.056 6.5 8.6 0.2 1 23 682 705 682 705 0.97 14 17 4e-06 0.00047 21.7 1.5 1 23 711 734 711 734 0.97 15 17 0.00017 0.019 16.6 1.2 2 23 741 762 741 762 0.98 16 17 0.0061 0.7 11.7 1.5 1 23 768 790 768 790 0.97 17 17 0.0034 0.4 12.5 0.8 2 23 797 819 796 819 0.96
Sequence Information
- Coding Sequence
- ATGAAGGAAGAAGAATTTGTACACTATACAATCACAAACACCAACAATGAGGTTGATTTTAAccaactgctctataactttgaTGCAGAGTGTACAGATAAGAAGAAaacatataattataatattgtagATGTAGATACTATCCGTCGCAGACTGAACAATATCATGTATTCAGTTTCTTACTGCGGTCTTTGCACTGAAAAGAATGATGACTTGTCATCAATATACACTGTGTTACATATTGGCAATGTAGGAAATGTGACAGTACAGCATATGCTGAAAGAGGTGCTCCATGATACTGCAGATCTGCTGACCAGCTGCTTCATTTGCAATCAGTGCTTAGACAAAACTATACACTCGTACATTTTCATACGAAATACAAAACAATCTGCACTGGTCATGAGTGAATACATAAATAGTTTTGATTCTAAAGTTCTCACTTTAGAAGAACAAATAGATGAAAGTGTAGATTACAGCGAGACAAAATTCGTTATTTTGATTGAACCAAATGAGGAATTTTCTTTGAATTACGCAAACATTAATGAGGCTGATCTGCTTGACTTTGAAGGAAGTTATGATGAAAACACAAATTTAATTAGTGCAGAAATAGATGAAGTTTTACAAGCCCTTCAGAAATCTGCAAGAAGTGACGAGCCTCTGGGGTTTCTGCCTGATCCCATTCCAGATACAGTTATTTACTTAGAAGATGGTAAAGTAACACCAATAAAAACCAAAAACAATGCTTTCAAATGCAGCATTTGTGATGTTGTTATGATCTCATTCAAGGAGTGGAAGAAACATGAACATACTTATCACAAAGTAGATGGGAATGCGCCTATGACTTGTCagatttgttttaaaatcatAGCAAACAAACGATGCTTAATACAACACTACAGAAGACATAACAGGAGTAAATGTAAACATTGTAATATTGTTATACCAAATTCAAGTACGATATTGCATATGATGCATGAACATGGCATTGAACCTAAAGAACAAAAGATTAGGACTTATGAAGATACAGAAGATTTTGACGAAAATCAGTGTGTGTTGTGCTTCAAGCAATTCAGTGATCAAGAAGAGCTGAACATGCATCACTGCAGATTTAAATGCACAGAATGCTCAGAACTTATATGTATTCATCAAAAGTACTTGATCTCATTCCGTCAACAGGCATTGAAAAAGAGCACGAAATTCGTTTGTCCAGATTGTGATTATGTGTGCACTAAAAGAGAACTTTTAATTGGGCATGCGAATAAAGCACATTTGAACCATCATTATGAGTGCGATCTGTGTGGTGCCGAATACTATTCTAAAACTACATTAAAATTCCACATGGCAACAGCACACGCCGAGCagtatatttgtaattattgTGATTATGACTTCAAAGATGAATCTAAATACAAAATTCATATAGAGCAATGCCAAAATGAGAAAAGGGATGTTGAGTGTCCAATTTGCATAGCGTCCTTCAATACCAAAAAGGAACTGAATAGACACGAAACACTACGTCACAAAATGTTTCCTTGTGGAATGTGTAATAAAACGTTCACGACAGAACATAAACAAAGAGAACATACTACGAAAACTCACAGCGGGTTGGAACGTTTGAAGAAAAGGGCTGATAATCTACAATGTCCGATTTGTGATAGGAAATTTGATCTCCGAGGAGAGTACACGAGACATGTAACGACGCATGGGCCAATATACAACTGCAGAGATTGCGATCAACAATTTGATGATCGTAGAATCTTTCTGCGACATTACATGCGTGCGCACAAGCTGAAGAATTTAAGAAGAGCGGAACGGCAGAAGAAGATTACTAAAAAAGAAAACCTTAATTTAATATGTGACACTTGTGGAAAAGTTTTTAACTCCAGAGAAATGTTCTCAGCGCATCGCAGAGCGCACATGGAACCAGTGTGTTGTGTTATTTGTAGTAAAATGGTGAAACAAATATCAATTTACTCTCACATGAGATGTCACAAACAACAGATGGGTTTAATGAAGAAACGTGTTACGAAACTAGTGAAAAAGTTCGAGTGTGACAATTGCGATTTTAAAGCGGTTAACCGTCAGCAAATCGAAACGCATATCAACCGTGTGCATCTGAAAATTAAGCCATATAAGTGCGAGATCTGCGGTATTGCTTACTGTTCAAAATACCAATTGACAGAACACATGAATAATAATCACAGAGAAGAAAAGTGGCGGAAATGCCAATTATGTGACAAAGTTATTCGTAGCAAAATAGGTTTGAAGAAACACATGATGAAGCATACCGGGGAAAGGCCTCATGTTTGCGAGGTGTGCGGACACGGTTTTATCACAATAACTCAATTGTCGGAACATTCAAAAAGGCATACGGAGGGGAAACATGTTGAGTGTCCAATATGCGAGTCTCAGTTCTTCTCGCTGAGGCATTTAAGGCTCCATATTAAGAGGGTGCATTGGAAGGATGAGAGAAAGGCCTTCAACCCTAAGTTGATCCAGGGTCTGGAAGGCCATGAATACATTTTCCAAGATAAGAGAATTGCAGTTGCTGAATAA
- Protein Sequence
- MKEEEFVHYTITNTNNEVDFNQLLYNFDAECTDKKKTYNYNIVDVDTIRRRLNNIMYSVSYCGLCTEKNDDLSSIYTVLHIGNVGNVTVQHMLKEVLHDTADLLTSCFICNQCLDKTIHSYIFIRNTKQSALVMSEYINSFDSKVLTLEEQIDESVDYSETKFVILIEPNEEFSLNYANINEADLLDFEGSYDENTNLISAEIDEVLQALQKSARSDEPLGFLPDPIPDTVIYLEDGKVTPIKTKNNAFKCSICDVVMISFKEWKKHEHTYHKVDGNAPMTCQICFKIIANKRCLIQHYRRHNRSKCKHCNIVIPNSSTILHMMHEHGIEPKEQKIRTYEDTEDFDENQCVLCFKQFSDQEELNMHHCRFKCTECSELICIHQKYLISFRQQALKKSTKFVCPDCDYVCTKRELLIGHANKAHLNHHYECDLCGAEYYSKTTLKFHMATAHAEQYICNYCDYDFKDESKYKIHIEQCQNEKRDVECPICIASFNTKKELNRHETLRHKMFPCGMCNKTFTTEHKQREHTTKTHSGLERLKKRADNLQCPICDRKFDLRGEYTRHVTTHGPIYNCRDCDQQFDDRRIFLRHYMRAHKLKNLRRAERQKKITKKENLNLICDTCGKVFNSREMFSAHRRAHMEPVCCVICSKMVKQISIYSHMRCHKQQMGLMKKRVTKLVKKFECDNCDFKAVNRQQIETHINRVHLKIKPYKCEICGIAYCSKYQLTEHMNNNHREEKWRKCQLCDKVIRSKIGLKKHMMKHTGERPHVCEVCGHGFITITQLSEHSKRHTEGKHVECPICESQFFSLRHLRLHIKRVHWKDERKAFNPKLIQGLEGHEYIFQDKRIAVAE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -