Cdea037406.1
Basic Information
- Insect
- Coleophora deauratella
- Gene Symbol
- -
- Assembly
- GCA_958295455.1
- Location
- OY282415.1:6596978-6609433[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.31 35 6.3 0.1 2 23 152 174 151 174 0.93 2 19 0.0071 0.82 11.5 0.2 3 23 198 218 196 218 0.96 3 19 0.08 9.3 8.1 0.0 1 23 222 244 222 244 0.97 4 19 4.9e-05 0.0057 18.3 2.3 1 23 249 272 249 272 0.97 5 19 0.16 18 7.2 1.4 3 23 281 302 280 302 0.95 6 19 0.00042 0.048 15.3 2.0 2 23 310 332 309 332 0.96 7 19 0.0082 0.95 11.3 5.9 2 23 339 360 338 360 0.92 8 19 0.78 90 5.0 0.2 1 14 366 379 366 383 0.89 9 19 4.6 5.3e+02 2.6 0.2 1 23 500 523 500 523 0.81 10 19 0.0058 0.67 11.7 0.0 2 23 550 572 549 572 0.97 11 19 0.024 2.8 9.8 2.6 1 23 595 617 595 617 0.98 12 19 0.017 1.9 10.3 0.1 1 23 621 644 621 644 0.96 13 19 6.5 7.5e+02 2.1 0.9 1 23 763 786 763 786 0.91 14 19 2 2.4e+02 3.7 0.2 5 23 815 834 814 834 0.88 15 19 0.0083 0.96 11.2 0.2 2 23 857 878 856 878 0.97 16 19 0.014 1.6 10.6 0.1 1 23 882 904 882 904 0.94 17 19 0.007 0.81 11.5 1.7 1 23 910 933 910 933 0.94 18 19 0.093 11 8.0 1.4 2 23 941 963 940 963 0.89 19 19 0.00098 0.11 14.2 0.4 2 23 971 993 970 993 0.93
Sequence Information
- Coding Sequence
- ATGCTCCGCCTGCGCGTACTGATCCTAGACACCTTATCTTGTTCTGTCTCCCCTCTTAGaagctttttttttgaaatttacgAGAAGCACGAATATATAGAGACATGGGGCTGTGTCGCAAGGGGGACTAGAATAATCAAAATAGAGAAACCGACGGTTACCGTCAAATTTGTCGACAGCTTAAGAAAAACGACGTTTCCCAGAAACTTGGCCGACGCGCTGAAGTTAACGGACCTAGACAAAAACAGAGTAAACCTGATTATGATCCTGACACACTCAAATGCAAACCCTTTCCCCGGCTCCAACCCCAATTGCCAATTTTGCACCAAAAAATTTCTCGAGTTCAAACAATTGAAAGAACACTTTATAGAAGAACATAGAGAACAGAAATTcttgcataaaaatataacgAAAATTTTTCAAGACGTTATCAATGTCGATACAACTGATCTAACTTGCACAGTTTGCGACAGGAACATCGATGATTTGGAAACGTTTTTACAACATCTGCAAGCTGAGCACAAAAAAAACGTTGATACAGATGTCGCGAGTTTTATATTGCCGTTTAAATTCGACTCCAAAAAGATTGCATGCTCAATTTGTACAACAGAGTTTGGTTCATTCAAACTGCTTCGAGAACACATGAATGGACACTTTAGGAATTTCATTTGTGAGATATGCTCAGCTGGATTCGTAGCTGAACGCTACCTTATTCTACACGTGAAAAGGCATGCGTCAGGAGAATTTAAATGTGACACATGCGAGAAAATATTTAGCAGCGAGACCAATCTTCGGGACCATAAAAAGAGAACGCACCTCGGTCTAGGCAAAAGAAATTTGTGCAGTGTCTGCGGCGAACGATTCATGGATTATTGGAAGAAAAAGCACCATATGGTAAAGGAGCATGGCGCGCCACCTGTCGTACTGAAGTGTCAAGCATGTGAGCGCACGTTTGATAACCAAAGATCTCTGACTCGGCACACGAAGAAAGATCACTTGATGGAGCGAAaacataattgtatttattgtgaTATGACGTTCTTCAGTAAGAGTTGCTTGCAGAAGCACATGATCAAGCATACGGGCCAGAGAACGTACAAATGCGAGGTGTGTTTGAAAGCGTATGCGAGAAAGAGGTCTGCATTTCGCGGAGATGATGTGGAAGCGCCCTTTAATACATCTGGAACAGCAACTACAATCAAACTGAAGAAAGGGCTGAACTTTTCCACTTTTATTGCAATCAAACCAGGAGCATATAAAAACAAGCGAAAGGAGCGAAAAAAGCTAGAAAAGTTACTACTGAAGAGTCTCGAAGAAAAGCGGAAATCCCGTGGACAGAAAGTCATTGAGCAAAATCCCAGTGATGAAATTCCTAATCAATCAAAGGAATCCGATAAAATTGACAGAAGTAACACAGAACTGAACTGGCAAATATTCAACGCGAAGACGATTTTACGTTGCTCCAACGCCACCCCTATATCTCGAATCAACGATAAATTTGCCTGTTCTTACTGCAACAGATTATATGATCTCGGTCTATACTTAAAAATGCATATCCTGGACGATCACAGCAAGTTGGAAAAGCCGGATTTTGTGAAAATCAAATCCCTTTCCCGTTACATTGTTTACATGGACGTAACCGATCTAAAGTGTAATCTTTGTGACGAGTCTATTGAAAACATTGAAGATCTTCTAGTTCACTTGAGGACCGGACATGATCAACTGATCCACGAAAATCTTAACAATCACATAATTCCCATGAAATTTGATAGCGAAGAAGATTTCAAATGCGTTGTATGTTTCTTCTCGTTCGGTACTTTCGACAAGCTAGTTGACCATATGAACCATCATTACGGTAATTATAGCTGCGAATTCTGCGGCGCGGGATTCGTCAATAGAGTAACTGTTATAGATCATAAGAAAGTCGTGCATAATTATGTGCAAAAAGTCAAGTATAAGCAAGGTGAAACACGCAGTACGAAAAATTCGAAGAGGAAACTGGATTCTTCGATTCCGGATTCTGAGTCACACGATAATAAGCTCGtGGTACCGAAGGAAGAAACCCCAAGCACAACAGACACTTCTAGTAACTCAGAAAGCGATGAGATAGAAACCAAATTATCTCGCAAAAGAAAACGAGTAATAAAAATCGACGCGTGCTCTCCACAGATTTCTTTGACGAAGCAAAAGAAAAAGTACGGAGAGATCAACAAGCACCTCGACAACATTAGAACTCTACTGCTTAATTCAAACGCAACACCGGTGAGATGTAAACAGGGAATCTGGTACAGTTGTTGTTTTTGCATAAACAGATATGTCGACCCGACGGAGCTCAAAATACACACTATAGAAAGTCACGATGACAAAGCCAAGTCTGATTTCATGATCCACAAGACCTTGGTAAATTTTTATGTCAAATTGGACGTATCCGACCTCCAGTGCAATTGTGGAGTAAGTTTCGGAAAACTGAACGATCTGACTGATCATTTAGTTGAAAAACACGGCAAAACGTTTCACAAAGACATAGCTAGTCAAATCTTACCATTCAGGTTTGAAAATGGCCTCCTTAAATGCGTTATTTGTGAGACTGTCTTCAATAGTTTCAAGCTAATTATTGAACATATGAATATGCATTTCCCTAACTACATTTGTGGGGAGTGCGGCAGTGGGTTTGTCAACAAGGAGAGACTGCAGGTGCACTCTGTAAGACACAGAAACGAGGGAGTGTTCAGCTGCTCATATTGTCAAAAAGTTTTCAACTCGAAGGTCAGGCAGAGGGAGCATGAGAGGCAAGTCCACATAACACTGAATAAGAGGAACAAATGTGGACTTTGCGGGGAGAAATTCACAGATTACACCCATAAATATAAACACGAAGAAGAGGTCCACGGTGTTAAGAAAACGTTGCTGCAGTGTCAGGCTTGCGACAGGGCGTTTAATAACCAGAGGGCGTTGACCGCGCACAAAAAGGCATTCCATTTAATGCAATATCCGAGGAAGATGCCAGTGCGTAATAATCCTAAAGAGAAATGTGATTAG
- Protein Sequence
- MLRLRVLILDTLSCSVSPLRSFFFEIYEKHEYIETWGCVARGTRIIKIEKPTVTVKFVDSLRKTTFPRNLADALKLTDLDKNRVNLIMILTHSNANPFPGSNPNCQFCTKKFLEFKQLKEHFIEEHREQKFLHKNITKIFQDVINVDTTDLTCTVCDRNIDDLETFLQHLQAEHKKNVDTDVASFILPFKFDSKKIACSICTTEFGSFKLLREHMNGHFRNFICEICSAGFVAERYLILHVKRHASGEFKCDTCEKIFSSETNLRDHKKRTHLGLGKRNLCSVCGERFMDYWKKKHHMVKEHGAPPVVLKCQACERTFDNQRSLTRHTKKDHLMERKHNCIYCDMTFFSKSCLQKHMIKHTGQRTYKCEVCLKAYARKRSAFRGDDVEAPFNTSGTATTIKLKKGLNFSTFIAIKPGAYKNKRKERKKLEKLLLKSLEEKRKSRGQKVIEQNPSDEIPNQSKESDKIDRSNTELNWQIFNAKTILRCSNATPISRINDKFACSYCNRLYDLGLYLKMHILDDHSKLEKPDFVKIKSLSRYIVYMDVTDLKCNLCDESIENIEDLLVHLRTGHDQLIHENLNNHIIPMKFDSEEDFKCVVCFFSFGTFDKLVDHMNHHYGNYSCEFCGAGFVNRVTVIDHKKVVHNYVQKVKYKQGETRSTKNSKRKLDSSIPDSESHDNKLVVPKEETPSTTDTSSNSESDEIETKLSRKRKRVIKIDACSPQISLTKQKKKYGEINKHLDNIRTLLLNSNATPVRCKQGIWYSCCFCINRYVDPTELKIHTIESHDDKAKSDFMIHKTLVNFYVKLDVSDLQCNCGVSFGKLNDLTDHLVEKHGKTFHKDIASQILPFRFENGLLKCVICETVFNSFKLIIEHMNMHFPNYICGECGSGFVNKERLQVHSVRHRNEGVFSCSYCQKVFNSKVRQREHERQVHITLNKRNKCGLCGEKFTDYTHKYKHEEEVHGVKKTLLQCQACDRAFNNQRALTAHKKAFHLMQYPRKMPVRNNPKEKCD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -