Cdea003845.1
Basic Information
- Insect
- Coleophora deauratella
- Gene Symbol
- -
- Assembly
- GCA_958295455.1
- Location
- OY282388.1:21256954-21269472[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.059 6.8 8.6 0.0 2 23 265 286 265 286 0.95 2 12 6.4 7.4e+02 2.2 0.0 1 22 291 314 291 317 0.85 3 12 0.0062 0.71 11.7 2.7 2 23 447 469 446 469 0.94 4 12 0.0044 0.51 12.1 0.5 1 23 475 497 475 497 0.94 5 12 0.081 9.3 8.1 0.1 1 23 505 528 505 528 0.89 6 12 2.7e-07 3.1e-05 25.4 3.8 1 23 533 555 533 555 0.98 7 12 6.1e-05 0.007 18.0 1.9 1 23 561 583 561 583 0.97 8 12 1.3e-05 0.0015 20.1 3.3 1 23 589 611 589 611 0.98 9 12 5e-07 5.7e-05 24.5 0.2 1 23 617 639 617 639 0.98 10 12 7.9e-06 0.00092 20.8 1.3 1 23 645 667 645 667 0.97 11 12 1.4 1.7e+02 4.2 0.1 3 13 683 693 681 694 0.86 12 12 0.0002 0.024 16.3 4.9 1 23 731 754 731 754 0.95
Sequence Information
- Coding Sequence
- ATGGAAGTTCTTCTCTATAATTCTACAGTTTGCAGATTATGTGGAGAGGAAAATGATAGCGGAACATTGTTATATTCATGTGAAGAAAATAGCCAAAACTTGAGTGAAGTTATAAATACGTATCTTCCAATCAAGGTGTCGGACGATGGTGTGTTGCCGCGCACTATCTGCCCCGGCTGCACCATTCAGCTGGAGGCCACCGTAGAATTCTTCAACCTTATCATCAGTGGACAGAAAGTCATCCGAGAACTTCACCAACGAGAAAAGGAATACAAGAAAATTTTGCAAAAGGAAGCAACAGAAGATGTTATCACTGAAAAGATTGTTTATGAAATCAACACCTCCAGCGGTGTATATCAGCTCGAACACCCTATTGCGCTGCAAGTGGCCGGACTAGAGCGTCCTAAGCGCAAGCGCGGCCGCCCGCCCAAGAAGCCCAAGACTCCTGAGGAATTAGCAGAGGAAGCTGCTGCAAGAGAGAAGGAGCTAAAGCAAAAAGAAGAGAGTAAGAAGGAGGATACCGGCGGGAAAAGAAGAAGGAAAACTCCCACCAGGTTTAGAGGGGCTGTGCAGGGCAAGGAGCTGGAGCGCATATTCAAAGAGGAGGGGGTGACGGAGGGGTCGGAGAGCGAGGCGGAGATCCGCGCGGAGTCGCcgcggggggcgggggcgggggcggcgcCGCGCGAGCCCGAGGTCATCGGCCACCTGGCGCAATCAGGCGAGCTCGTGGTGTTGGTGCGGGGCAAGGGCCGCGGCCGCCCCAAGGGCCGCATGCGTCAAACAAAGAACGAGTGCGCCATCTGCGGCATGGAGTTCTCCTCGGTGGGCCGCTACATGTCGCACATAGCGCAGCACGGGCCGGTGCTGTTCCAGTGCGCGGCCGCCGCTTGCGAGCAGACGTTCGCGGCGCGGCTGGCGTTCGAGGCGCACCAGCGGGACACGGGCCACGTGGGCCGCACCGTGGTGCCGTGCGCCACCGAGCCCAATAGCGAAGTAAAACTGGAAAGCGTCACTCCGAGCCACCAAAAAAATAACGCCACTAATCAAAGCGAAGAACTGGAAGAAGTATCCGTGCCCGAAATTGTCATCAAGCCAGAGGGCAACCTAACTCCCCGGCCCAAGCTGGAAGGCAACTTGACCCCTCGGCCCAAAGTAGAGGGCAGTACGACCCCCCGGAACCCTGACTCTGAATTTACTGTTCTAGTTAAAAAGGATGAAATTCAAACTGATGTTGAAGACAATGACGTAGTTGCTGTCGATACAACGGACCCGTTGGAAGAAACCACAGAGCAGCCGGAGACGTCGGGAACAAATACAAAGGAGAAAGTGAAACTCAAGTGCAACCACTGTGACAAGTTATTCAGCACGAAACAGAGCAAGTCTATGCATATTAAGGCAGTGCACCAGGGCGAGAAGCCGTACCTGTGCGGCGAGTGCGGCTGCCGGTTCGCCTACCCGCGCTCGCTGGCGCTGCACCGCGtgtcgcaccgccgccgccgcccgcgccgctacGCCTGCGACCTGTGCCCCAAGGTCCTAAACCACCCATCTTCGGTAGTGTACCACAAAGAAGCGGAGCACGCGGGCCAGTGCTACGTGTGCAACAAGTGCGGCAAGTCCTTCAAGCACAAGCAGCTGCTGCGGCGGCACCAGCTGGTGCACACGCAGGCGCGCCCCTTCCACTGCACGGAGTGCAGCGCCACGTTCAAGACGAAGGCCAACCTGGTGAACCACCAGCTGCTGCACTCGGGCGTCAAGAAGTTCACCTGCGACATCTGCAAATACAAGTTTGCGCACAAAACCAGTCTCACGCTGCACATGAGATGGCATACAGGTTCAAAGCCCTTCGTGTGCAAAGTGTGCGGCAAGGGTTTCAGTCAGAAAGGCAACCTATCAGAACACGAGCGCATTCACACGGGCGAGAAGCCGTTCGCGTGCGGGCAGTGCGGCCGCCGGTTCACCACGTCCTCCCAGTATCGGTTACATGCGCGTCGCCACCAGACGGACCGGCTGGACCGGATGGACCGGGTTGACCGGCTCGCCTGCCTACACTGCCCTAAGAGATTCCCGTCGCGGCGGCGCGAAGCGGGCGCGGCGGGGGCCGGGGCCCCGGGAGCCGGCGCGGGGGCTGGCCGCGGGGGGGCGCGCTGGGCGGCGGGGGGGCGGCGGCCCCCGGGCGAGCGGCCGCACCGCTGCCCGCACTGCCCGCGCGTCTTCGCCGACTGCTCCAGCCTCAGCAACCACAAGAAGCAAGTGCACAAACAGATCAGCCTGCTAGTCAGCGACAAGGAGCAAGTGATGCAACAGCCGTTACTGCTGCAGTCGCAACAGCTGTTGCACCCACAGCCGCCAGAAGCGCAGTCCGACATAGAAGAGAGCATCATCGTGATGGACTCTATGGAGACTATGCACGGTGTGCAGGTGCAGGTGCAGGAGGAAGAACCAGAAGACGAGAGGGTCATATACGTGGCGTATGATGTCGACGAGCCAGAGTCGACCTTCCATATCATGGACCCGGAACAAGTGAGTgctatgaaaaataatatttaa
- Protein Sequence
- MEVLLYNSTVCRLCGEENDSGTLLYSCEENSQNLSEVINTYLPIKVSDDGVLPRTICPGCTIQLEATVEFFNLIISGQKVIRELHQREKEYKKILQKEATEDVITEKIVYEINTSSGVYQLEHPIALQVAGLERPKRKRGRPPKKPKTPEELAEEAAAREKELKQKEESKKEDTGGKRRRKTPTRFRGAVQGKELERIFKEEGVTEGSESEAEIRAESPRGAGAGAAPREPEVIGHLAQSGELVVLVRGKGRGRPKGRMRQTKNECAICGMEFSSVGRYMSHIAQHGPVLFQCAAAACEQTFAARLAFEAHQRDTGHVGRTVVPCATEPNSEVKLESVTPSHQKNNATNQSEELEEVSVPEIVIKPEGNLTPRPKLEGNLTPRPKVEGSTTPRNPDSEFTVLVKKDEIQTDVEDNDVVAVDTTDPLEETTEQPETSGTNTKEKVKLKCNHCDKLFSTKQSKSMHIKAVHQGEKPYLCGECGCRFAYPRSLALHRVSHRRRRPRRYACDLCPKVLNHPSSVVYHKEAEHAGQCYVCNKCGKSFKHKQLLRRHQLVHTQARPFHCTECSATFKTKANLVNHQLLHSGVKKFTCDICKYKFAHKTSLTLHMRWHTGSKPFVCKVCGKGFSQKGNLSEHERIHTGEKPFACGQCGRRFTTSSQYRLHARRHQTDRLDRMDRVDRLACLHCPKRFPSRRREAGAAGAGAPGAGAGAGRGGARWAAGGRRPPGERPHRCPHCPRVFADCSSLSNHKKQVHKQISLLVSDKEQVMQQPLLLQSQQLLHPQPPEAQSDIEESIIVMDSMETMHGVQVQVQEEEPEDERVIYVAYDVDEPESTFHIMDPEQVSAMKNNI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -