Cdea011084.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Coleophora deauratella
Gene Symbol
L
Assembly
GCA_958295455.1
Location
OY282392.1:9172122-9179198[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.62 72 5.4 5.8 1 23 3 25 3 25 0.97
2 16 8.3e-06 0.00096 20.7 4.1 1 23 31 53 31 53 0.99
3 16 1.4e-05 0.0016 20.0 0.1 1 23 59 81 59 81 0.98
4 16 0.00065 0.075 14.7 0.0 2 23 97 119 96 119 0.95
5 16 5.9 6.9e+02 2.3 0.1 9 23 150 165 146 165 0.93
6 16 0.14 16 7.4 0.0 1 23 226 248 226 248 0.94
7 16 0.14 16 7.4 0.0 2 23 262 283 261 283 0.91
8 16 4.6e-05 0.0053 18.4 0.6 1 23 291 314 291 314 0.94
9 16 0.032 3.7 9.4 0.1 1 23 319 342 319 342 0.92
10 16 0.0013 0.15 13.8 0.7 1 23 396 420 396 421 0.96
11 16 0.0002 0.023 16.4 0.1 2 23 480 501 479 501 0.96
12 16 0.054 6.2 8.7 0.0 1 23 509 531 509 531 0.98
13 16 0.93 1.1e+02 4.8 0.7 2 23 539 560 538 561 0.94
14 16 0.22 25 6.8 0.3 1 23 635 657 635 657 0.94
15 16 0.0034 0.4 12.5 0.1 1 20 665 684 665 687 0.95
16 16 0.1 12 7.8 0.3 1 23 694 716 694 716 0.94

Sequence Information

Coding Sequence
ATGCCGTTCCGCTGCGAATTCTGCTCGCGGCTGTTCAAGCACAAGCGCTCGCGCGACCGCCACGTCAAGCTGCACACGGGGGACAGGAAGTACCGCTGTGCGCACTGCGAATCCGCTTTTTCTAGAAGCGACCACCTGAAAATCCATATGAAGACTCACGACAATCAGAAACCGTTCCAATGCACAATATGCAACCGTGGTTACAACACGGCGGCTGCATTGACGTCGCATATGCAGGGCCATAAACGGGACAGGGATGGTCGAGAAACCGACAGGCGCAGGGCGTTACGTTGCTTGCGATGTGGAGATGCCTTTCGGAGACCTGACTTGTTGCAGGCTCATATGGCGAGCGCTCATGGAGTAGATGCAGCAGCCTTAACCCCGCCCAGACGAATAGCCTCTCAACCTCCACCCACGCTCCTCGCTTGCATATATTGCACCCGAGACACCTTTACCAGCATGGAGCAACTTCAGTTACACGTCCGTGCTGCGCATTCTGCTCTGCTGAACGGAGAAACGCCACTTCAAGTAGATCAGCCAGCACCAACAGATCTCAGTCGAAGATCATCGAACGATTCGTCACTAAAGCGACCGGGATCAGCTTTAGAGAACCCAAATACGAAGCGACGACGCTCTGATTCGACTACACCTCAAACGGCACTATCTCCGAGCACATTCCTATGTAACCAATGTGATGCGGCCTTACCAGATTTTGAGGCTTTTAGAGCTCATTTGAAAGGGCACCTCGAAGAAGGCGGCGAGCTTGGAAATTCAAGTCCCGTTCCATGCTTACACTGCGGAGCTACGTTTGCGGATGCTGCAGCTTCCGAACGTCATCTGACTGCTCACTATTTGGCCGTCTCCTGTGAATACACATGCCATAGTTGTGCGCGAAGCTTTCCCACTCCAGATGACTTACAAAAACACCTTCTCGACTTACACGCGCATCACTTGTACCGGTGTTCCTTGTGTAAAGAAATTTTTGACTCCAAAGTTGCTATTCAGGTCCATTTTGCAGTAGCTCACAGCGGTGAGAACAAAGTGTGGATGTGTCGCggctgcggcgcgggcgcaggcgcGCTGCGCACGGAGGCGGAGGGCGCGGCGCACGTGCTGGCCCGCCACGCGGCGCGCTGCGCGTGCGGCGCCGTGCTGTCGGGCGCGCGCGCCAGGAGCCACCGCGCCTACCGGTGCCCGGTGCCCACCTGTACTGATACTTTCACCGTCCAGTACCTGTTGGAAAGGCACTTGCAAGTCCATCACACTATGGCGCATCAGGGTCTAAACGGTGACATTAATAGACCAAAGCAAGTGGAAAACAACAACGGGACAGACACCGACGGGGCTTGCTCCCCTCGCCCAGTGAGCGGGGACAGCAGCGCGACTGCGGCGCCTCCAGCCGAAGAGAGGCGGCGCAAGAACGGCGCAGTAGCGCTGCAGTGCGCCTACTGCGGGGAGCGCACCAGGAGCCGCGCGGAGCTGGAGGCCCACACTAGGGCGCACTCCGGAGCGGCTGCGGCTAGACACAAGTGCCTCATATGCGATGAAGTGTTGCCGTCCGCTGGCGTTCTTGCCGAACATAAATTAACGCACTGCAAGGTTATAGCTGGAGACACTTGTTCTCGATGCCGCGCACGGCTGCCTTCTGAAGAGGCATTCTTAACACACATGGCGCGCCACCACCCTGCTCTGCCCGCACCCTGCGTCGTCTGTCGCCAGACACTGGCCTCCGAACCTGAAGCCCGTCTCCATGCTCGGTTTCACCTCAGAGTTAGTGAAGATGAGCAGAGATGTGCAATATGCCTGAGGACGTTATCGGAAGCCGAGTCGGGCGAAGGAGCGAGGGCTTGCTCGTCTTGTTATGCTCGTCACGTGGCTCCTCGGCCACCACCAGCCACCGACCACGATTGTCGGTTGTGTCGACGCGCCTTGGGGTCACCTTCTCGACTTCAGGCGCATTTGATCGAGCACAACTTCGCTGGAATCGGAGCCTTCACGTGCTACTTATGTTCAGCGGTGTTTACAAGCGCCGCGGGTTTGCAGCGACACCTGCCGGAGCACGCCGCAGCCCCGCGCCCTTACGACTGCGGCCGATGTGGCCTCAAGTTCTTCTTCCGAGCAGAACTCGACAACCACGCCTTCGTCCATCTGGAGGAAGCCGAGATTGCTCAACGAGCGTTTTATGAGGCGTATGCTAGGGGAGCAGCGTCGGCATGGGCCGCGCTAGCTCCGCCCGAGCCGCCGCCGGTGTCTGCGCCCGCCACCATCGAGGTGCCGGTGAAAAAGGAACCGGAGGTGAAGGAAGAACGGGCTGATGAGTATATTGAGGTGTCATCCCCGCCGCCGTCCGCCCCTCCCGCCCCTGCGTCCGCCTCACCCCCGCCGCCGCAAGTGAAACAAGAGAAACCCGATGAAGAATAG
Protein Sequence
MPFRCEFCSRLFKHKRSRDRHVKLHTGDRKYRCAHCESAFSRSDHLKIHMKTHDNQKPFQCTICNRGYNTAAALTSHMQGHKRDRDGRETDRRRALRCLRCGDAFRRPDLLQAHMASAHGVDAAALTPPRRIASQPPPTLLACIYCTRDTFTSMEQLQLHVRAAHSALLNGETPLQVDQPAPTDLSRRSSNDSSLKRPGSALENPNTKRRRSDSTTPQTALSPSTFLCNQCDAALPDFEAFRAHLKGHLEEGGELGNSSPVPCLHCGATFADAAASERHLTAHYLAVSCEYTCHSCARSFPTPDDLQKHLLDLHAHHLYRCSLCKEIFDSKVAIQVHFAVAHSGENKVWMCRGCGAGAGALRTEAEGAAHVLARHAARCACGAVLSGARARSHRAYRCPVPTCTDTFTVQYLLERHLQVHHTMAHQGLNGDINRPKQVENNNGTDTDGACSPRPVSGDSSATAAPPAEERRRKNGAVALQCAYCGERTRSRAELEAHTRAHSGAAAARHKCLICDEVLPSAGVLAEHKLTHCKVIAGDTCSRCRARLPSEEAFLTHMARHHPALPAPCVVCRQTLASEPEARLHARFHLRVSEDEQRCAICLRTLSEAESGEGARACSSCYARHVAPRPPPATDHDCRLCRRALGSPSRLQAHLIEHNFAGIGAFTCYLCSAVFTSAAGLQRHLPEHAAAPRPYDCGRCGLKFFFRAELDNHAFVHLEEAEIAQRAFYEAYARGAASAWAALAPPEPPPVSAPATIEVPVKKEPEVKEERADEYIEVSSPPPSAPPAPASASPPPPQVKQEKPDEE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01437318;
90% Identity
iTF_00356705;
80% Identity
-