Cdea037402.1
Basic Information
- Insect
- Coleophora deauratella
- Gene Symbol
- -
- Assembly
- GCA_958295455.1
- Location
- OY282415.1:6581910-6586782[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.053 6.1 8.7 0.3 1 23 23 46 23 46 0.92 2 16 2 2.3e+02 3.8 0.2 2 23 74 96 73 96 0.93 3 16 0.51 59 5.6 0.3 1 23 118 140 118 140 0.96 4 16 0.00011 0.013 17.1 0.8 1 23 144 166 144 166 0.98 5 16 0.002 0.23 13.2 0.9 1 23 171 194 171 194 0.97 6 16 0.49 57 5.7 3.5 2 23 201 223 200 223 0.94 7 16 0.00033 0.038 15.7 0.8 2 23 230 252 229 252 0.97 8 16 0.0029 0.33 12.7 1.3 1 23 327 350 327 350 0.93 9 16 0.0063 0.73 11.6 0.4 2 23 423 444 422 444 0.97 10 16 0.0013 0.16 13.7 0.2 1 23 448 470 448 470 0.98 11 16 0.0008 0.092 14.5 0.3 1 23 475 498 475 498 0.97 12 16 0.033 3.8 9.4 0.7 2 23 506 528 505 528 0.92 13 16 0.00018 0.021 16.5 4.9 1 23 535 558 535 558 0.98 14 16 0.01 1.2 11.0 2.3 1 23 564 586 564 586 0.95 15 16 4.5e-05 0.0052 18.4 4.1 1 23 592 614 592 614 0.99 16 16 0.00013 0.015 16.9 0.7 1 23 620 643 620 643 0.96
Sequence Information
- Coding Sequence
- ATGCAAAACATAtcagaaataataaaatggTCCAATGCTACGCCCATCAGAAGCGGCATGAATGGATTCTCCTGCGTCGTGTGCCCTAACCAGTTCGAGCTACCCTACGAACTGAAGAAACATTTTCTGGAAACACATCCCGAGTTTGATGTCCGTGAAGCTAACTTTGGATGCAAAAGGGGGAACAGTTTGTATGCTAAACTAGACATCACCGGACTGAACTGTGCCCTTTGCGACCAGGATATAGACACGCATGAGGAGTTATTGTATCATTTGAAAGAAGATCACGGGAAACCGGTACTGACGGACATTATAAACCAAATACTgcccttaaaatttaattacgacACATACACCTGTTTCATTTGTTCAAGTGTCTTCAATGCTTTCAAACCGTTACTAGAACATACTAATGTTCATTACAAGAATTACACTTGCAACCATTGTCCAGCTGGCTATGTGACTAAAGAGCTTTTGAGAAAACACGCACTGAGGCATGATTACGGCAGCTTCCAATGCATGCGTTGCGAGGAGGTTTTCGAAACCCTAGTCAAGTTGAAGACGCACGAGCGATCCAAGCATCCTACTAAGAATTGGAACAAATGCTACCGTTGTAATGAAACGTTTAAATATCATCTCACTAGGCAGAGACACTTGATGGAGGTACACGGAGTAGACACAAGAGTGAAGTGCACGATGTGTGATGCTTATTTCATGCGCGCGTCGACCCTCAGCAAACATGTGAGGAAAAATCATCTTCTAGAGAGGAATTTTCTATGTGATGACTTCGACGTTATCATCAAAAGAGAAATCGAAGACGACGAACCAAGTCAAGTTGAAACGGACGCTATTGAGACGAAGATTCCGCAAAAACAAGTTTCAACAAAAGGAAAAGAGCTTGAAAAGCATCGCACAACGGTCAGGGAAATTTTACTTTGCACAAACGCAACACCTATACGAAGTTATAGTGGAATTGGATACTCGTGTTGCTTTTGCACTAAGCAATTTCCCAACGCACCTGACCTTAAACAGCACACAATAGAAATCCATGatgaaaaagaaaaatcaaTATTCATGAAAGGGAAGGATCTATCGAAATTCTACGTCAAACTCGATATCACGTCTCTAATATGCATCTTGTGTCAGAAACCTATAGACTCAGTAGATTATCTTATGGAACACTTGGAGAATATTCACAAGAAAAACATGTATGCAGCTACGAAAAGTCGATTGGTGCCCTTCAAATTTGAAGGTGGAGAATATCTGAAGTGCTCTATCTGTTCAAATTCATTCAATTCCTTTAGAGTGTTAGTTGAACACATGAATATACATTACAGGAATTATGTTTGTAAAGATTGCGACGCAGGTTTCGTCagtcaaaatatattatttcagcACGTTAAAACACATAGAATTGGAACATTCAAATGTGATTACTGCCCGAAGATATTTGTTACGTTGATAAAAAAGAGAGCCCACGAAAGAGTAGTGCACACTCATACAAATATGATGAATAAATGCGGATACTGCACGGAGACTTTTAAAGACTACTGGACGAGATCGAAGCATTTGTCTGCAGTTCACGGAGTGACCTCCCCAGTGTTCAAATGCAAGGCATGCGACAAAACTTTTCATCAGCAAAAGTCTTTGCGGATACATACAAAGCGCGATCATCTCATGGAGCGACCGCACGCATGCAACCAATGCGAAATGAAATTTTTCACAGCGAAAAAGCTTTCAGAGCATATGGTGAAACACACGGGACTGAGAGAGTTTCAATGTCAGGTCTGCTTGAAGTGTTATGGGAGGAAGAAAACATTGAACCAACATATGAGGGTTCACGACGATTATTGTAgatttaaatgtgaacagtgtGGTCAGGGCTTCGTTCAGAAGAACAGTTGGTCTAGCCACATGCTCAATAAGCATGGGAAACAAGTTTGA
- Protein Sequence
- MQNISEIIKWSNATPIRSGMNGFSCVVCPNQFELPYELKKHFLETHPEFDVREANFGCKRGNSLYAKLDITGLNCALCDQDIDTHEELLYHLKEDHGKPVLTDIINQILPLKFNYDTYTCFICSSVFNAFKPLLEHTNVHYKNYTCNHCPAGYVTKELLRKHALRHDYGSFQCMRCEEVFETLVKLKTHERSKHPTKNWNKCYRCNETFKYHLTRQRHLMEVHGVDTRVKCTMCDAYFMRASTLSKHVRKNHLLERNFLCDDFDVIIKREIEDDEPSQVETDAIETKIPQKQVSTKGKELEKHRTTVREILLCTNATPIRSYSGIGYSCCFCTKQFPNAPDLKQHTIEIHDEKEKSIFMKGKDLSKFYVKLDITSLICILCQKPIDSVDYLMEHLENIHKKNMYAATKSRLVPFKFEGGEYLKCSICSNSFNSFRVLVEHMNIHYRNYVCKDCDAGFVSQNILFQHVKTHRIGTFKCDYCPKIFVTLIKKRAHERVVHTHTNMMNKCGYCTETFKDYWTRSKHLSAVHGVTSPVFKCKACDKTFHQQKSLRIHTKRDHLMERPHACNQCEMKFFTAKKLSEHMVKHTGLREFQCQVCLKCYGRKKTLNQHMRVHDDYCRFKCEQCGQGFVQKNSWSSHMLNKHGKQV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -