Cdea034994.1
Basic Information
- Insect
- Coleophora deauratella
- Gene Symbol
- -
- Assembly
- GCA_958295455.1
- Location
- OY282412.1:8446697-8449661[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0021 0.24 13.1 4.9 1 23 147 170 147 170 0.95 2 17 0.0001 0.012 17.3 1.2 1 23 179 202 179 202 0.96 3 17 0.014 1.6 10.5 0.4 2 23 215 237 215 237 0.96 4 17 0.00014 0.016 16.9 2.4 1 23 246 269 246 269 0.97 5 17 3.2e-05 0.0037 18.8 1.2 1 23 281 304 281 304 0.97 6 17 0.00025 0.029 16.0 0.4 3 23 331 352 329 352 0.96 7 17 0.0001 0.012 17.3 1.2 2 23 362 384 361 384 0.96 8 17 0.01 1.2 11.0 1.0 2 19 389 406 388 409 0.92 9 17 0.084 9.7 8.1 0.8 2 21 414 433 413 436 0.94 10 17 0.2 23 6.9 1.6 3 23 446 467 445 467 0.96 11 17 1.1e-05 0.0013 20.3 3.6 1 23 472 495 472 495 0.98 12 17 0.00024 0.028 16.1 1.4 2 23 507 529 506 529 0.95 13 17 0.033 3.8 9.4 2.3 1 23 555 578 555 578 0.91 14 17 0.034 4 9.3 0.3 2 23 585 606 584 606 0.96 15 17 0.11 13 7.7 1.0 2 23 613 634 612 634 0.97 16 17 0.0092 1.1 11.1 0.2 1 23 700 722 700 722 0.96 17 17 0.14 16 7.4 1.6 1 23 728 751 728 751 0.97
Sequence Information
- Coding Sequence
- ATGGACATTAAACAGGAGACAATtgatttgaaaattaaaattgaaggTGAAAACAACACAAGATGCGATCCAACATCACTTTTACCGGAAGAGCCAATGTCgtacgaaataaaaaagaaaaagaagaagaagaaaaagaaacaagaagaTCCATTCAAAGATATAGCAGAGAAAGTTATGGTTACAGAGAGAATAATGATGGCCGAAGATGAAACGGACACTATTTTTGACCCTGAGGTTACTATTAAAGCAGAAAATATTGAAGTAGATCTGGATTTTAATGAAtTCATAGACAACACTGATCTGGTTAAAAGCGACGTAGATGAAACTCAGGAACCTGAAATCAAGATTGAGCCTCAAAACCATGATGCTGTCATATTAACCTTTGAAAATGTTGTCAAGGCCAAAACAGATGTAAACGTAAATTCAGAAGCAAGTTACTTGTGTAAAGTGtgccatttattttttaaatcatcgaAGACACTAGAGATGCATCAGAAACGCAAACACAAAGTCTTCAGGCGTAACTTTAAACACATTTGTGATTACTGTGGCATGTCATATGAATTCAAGAACAGTTTAGTCGCACATATAAGGAGGAAACACGGTCCTGGTGCTTCACCAAATGATACAGAGAATCGTTCCTGTGATATCTGTGCCATGGTATTTAAAGGAATGGGGCGTCTCCGAATGCACATGAGGAGAAAACATAACTACTATGAAGAATCATTCCAACACGTTTGTCCAGATTGTGGATTGACTtacgaaaaatattgtagtcTAATTGTTCATATGCGTAGAAAACATTCTAAAGTTAAGAAACCGGTTGTAACACAGTTGTATAATTGCCCGTTCTGTCCAAAAATGTACACGAATAGAGAGACATACGCGAGACACATACAAAGAAAGCATAAATGTAATGAAGATGGTAGCATTGAGAATAAAGATCAGTATTGGGAAAGTTGTAGAAATGAACAGGGTGAAATTGCCTGTAAAGAGTGTCCTCTAGTCTTTTCATCTATAAACTTCTTGAAATTACACATGAGGAGAAAGCATAATGCTTTGAGAGACGATTTTGGGCTTAAATGTAGGATTTGCAATTTATCATATGAGAGAGTTGAAAGTTTGAAAAGGCATATAAGAAGGAAACATGGGACAAAAACCCATTGTAATATTTGtgataaaaaatttgaagatcGAGAGGCATATTTGAATCATTCACATGTAAAAGTTGCAAAAGAATGTTCATTATGTGGGCTGTTGTTTGCTTCTCAAGGAGGATTGGGCAAACATTTGAGATGTACTCACAAAATTGAAAGTCCTAAAGTTGTTTTTTGCAGTATCTGCAATGAAGGATTTCATGATAAGCGTTTCTTGAAGCCGCATTTGATGAAGGTGCATTTAAAAGTATCTTACACCTGTGCTTATTGTAGGAAAGTCTTTAAAACTAGGGAAAGTTACAGACGCCATATCCAAAAGTTTCATCCCGTAAAAAGCTCTTCGAACTATGAATTGCAGCAATGCGAACAGTGTTCAGAAACCTTTACAGATGAGTTTGAATTATGTAAACATATAAACTTGGTTCATCTTGATCCGTCTTCGGAATTTGCGAAGCATGCATTGGTTGAGGTGAAAAAGGAAGACGAACCAAATCTAGAACCGTTTCACTGCACAAAGTGTACGGACACCTTTGCAAATTGGGAGCAACTAAGATTGCATTTTGAACAGTCACATTACACCGTTAATTACACTCAGTGCCAAGTCTGTGGACAAATGATTCAGGAGAACGAAttacaaaaacatataaaaGTTAATCATACAACTATGGAGGAAGTTAAATGTAGATACTGTGAATTCAAGACTGACGTTCGAGCTAGTATGACACAGCATATGCTGAGACACAAGAACGCTACAACGATTAACTGTGACTACCCCAATTGTAGATATAAGACATACTACGAAGGTGCTATGAGCAAACATAAGCAAAAACACCAGGAACAAGGTGTGAAATTGCAATGTTCCAAATGTACGTTCCAAACTATGAACAAATATATCATGAAATATCATGAAGAAGCTCATTTAACTGGTAAAAAGAAGTATGCTTGCAATCAGTGTGATTATTCTACTATACTGCCAGCTAATTTGGTTCAGcacaaatacaaacattcaaCTGAGAAACGTTTCAAGTGTGAAGTTTGTCCATTTGCATCAAAATATAATACCTCTCTTCGGTTCCATGTTAAAACGAAACACTGTGATCTACCTACTTTTGGTTAA
- Protein Sequence
- MDIKQETIDLKIKIEGENNTRCDPTSLLPEEPMSYEIKKKKKKKKKKQEDPFKDIAEKVMVTERIMMAEDETDTIFDPEVTIKAENIEVDLDFNEFIDNTDLVKSDVDETQEPEIKIEPQNHDAVILTFENVVKAKTDVNVNSEASYLCKVCHLFFKSSKTLEMHQKRKHKVFRRNFKHICDYCGMSYEFKNSLVAHIRRKHGPGASPNDTENRSCDICAMVFKGMGRLRMHMRRKHNYYEESFQHVCPDCGLTYEKYCSLIVHMRRKHSKVKKPVVTQLYNCPFCPKMYTNRETYARHIQRKHKCNEDGSIENKDQYWESCRNEQGEIACKECPLVFSSINFLKLHMRRKHNALRDDFGLKCRICNLSYERVESLKRHIRRKHGTKTHCNICDKKFEDREAYLNHSHVKVAKECSLCGLLFASQGGLGKHLRCTHKIESPKVVFCSICNEGFHDKRFLKPHLMKVHLKVSYTCAYCRKVFKTRESYRRHIQKFHPVKSSSNYELQQCEQCSETFTDEFELCKHINLVHLDPSSEFAKHALVEVKKEDEPNLEPFHCTKCTDTFANWEQLRLHFEQSHYTVNYTQCQVCGQMIQENELQKHIKVNHTTMEEVKCRYCEFKTDVRASMTQHMLRHKNATTINCDYPNCRYKTYYEGAMSKHKQKHQEQGVKLQCSKCTFQTMNKYIMKYHEEAHLTGKKKYACNQCDYSTILPANLVQHKYKHSTEKRFKCEVCPFASKYNTSLRFHVKTKHCDLPTFG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00356708;
- 90% Identity
- -
- 80% Identity
- -